CSPI03G21470.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI03G21470.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 17726104 .. 17726743 (-)
Sequence length640
RNA-Seq ExpressionCSPI03G21470.1
SyntenyCSPI03G21470.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCAAAACTGGCCTAAAGATTTTTGTCCTCTCTCTCTTCTCATCTAATTCATGCCACATTCTTCAAACACCAAAACATCAATGGCAACACCGACAACAACAACAATGGTAGCGGTAGCCATTATTGTGGTGGTTTCAACTATAGGTGCAAGTCATTGCAAGGCTGCTTCTCTAAATTCAAACTTGGGCAATGAAACCACCACGGCAGCTACATCATCCACATGGTGCAACAGTCTCGACAAGGAATGCCTCATTGGAGTCGAAGATGACAACATTGAAACCTCAGCATTTCCAAGCTTATATAATACTGTGCGGACTGCAAATGGGCAAAAGGCAGTATGTGGTCGGGTGGGAAGATACGATAACCAGAGATGTCTCCCCCAGAAGAGGCCCAACCCGATTCAAAAATGTTCTACATTTACTCGCAGCTGTTAATCACCAACACCAAGTAATTAGAAAGTGAACAGAAAATTCAATGTCGACACATGTGGTTTTCACATTTTCTTTTATTTTTATTTTTAAAATTTGGAGTGAAGTTTATATGTTATTTACTACCTACCTTACTTAATTAATGTCGCTTGTATTTATCTAATCACTCTGCTTTCGCTAAGCTTAACTTCTTCTTTCTTCTTTCACCTTCA

mRNA sequence

CTCAAAACTGGCCTAAAGATTTTTGTCCTCTCTCTCTTCTCATCTAATTCATGCCACATTCTTCAAACACCAAAACATCAATGGCAACACCGACAACAACAACAATGGTAGCGGTAGCCATTATTGTGGTGGTTTCAACTATAGGTGCAAGTCATTGCAAGGCTGCTTCTCTAAATTCAAACTTGGGCAATGAAACCACCACGGCAGCTACATCATCCACATGGTGCAACAGTCTCGACAAGGAATGCCTCATTGGAGTCGAAGATGACAACATTGAAACCTCAGCATTTCCAAGCTTATATAATACTGTGCGGACTGCAAATGGGCAAAAGGCAGTATGTGGTCGGGTGGGAAGATACGATAACCAGAGATGTCTCCCCCAGAAGAGGCCCAACCCGATTCAAAAATGTTCTACATTTACTCGCAGCTGTTAATCACCAACACCAAGTAATTAGAAAGTGAACAGAAAATTCAATGTCGACACATGTGGTTTTCACATTTTCTTTTATTTTTATTTTTAAAATTTGGAGTGAAGTTTATATGTTATTTACTACCTACCTTACTTAATTAATGTCGCTTGTATTTATCTAATCACTCTGCTTTCGCTAAGCTTAACTTCTTCTTTCTTCTTTCACCTTCA

Coding sequence (CDS)

ATGCCACATTCTTCAAACACCAAAACATCAATGGCAACACCGACAACAACAACAATGGTAGCGGTAGCCATTATTGTGGTGGTTTCAACTATAGGTGCAAGTCATTGCAAGGCTGCTTCTCTAAATTCAAACTTGGGCAATGAAACCACCACGGCAGCTACATCATCCACATGGTGCAACAGTCTCGACAAGGAATGCCTCATTGGAGTCGAAGATGACAACATTGAAACCTCAGCATTTCCAAGCTTATATAATACTGTGCGGACTGCAAATGGGCAAAAGGCAGTATGTGGTCGGGTGGGAAGATACGATAACCAGAGATGTCTCCCCCAGAAGAGGCCCAACCCGATTCAAAAATGTTCTACATTTACTCGCAGCTGTTAA

Protein sequence

MPHSSNTKTSMATPTTTTMVAVAIIVVVSTIGASHCKAASLNSNLGNETTTAATSSTWCNSLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKCSTFTRSC*
Homology
[Close]
BLAST of CSPI03G21470.1 vs. ExPASy TrEMBL
Match: A0A0A0LA12 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.1e-63
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MPHSSNTKTSMATPTTTTMVAVAIIVVVSTIGASHCKAASLNSNLGNETTTAATSSTWCN 60
           MPHSSNTKTSMATPTTTTMVAVAIIVVVSTIGASHCKAASLNSNLGNETTTAATSSTWCN
Sbjct: 1   MPHSSNTKTSMATPTTTTMVAVAIIVVVSTIGASHCKAASLNSNLGNETTTAATSSTWCN 60

Query: 61  SLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKC 120
           SLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKC
Sbjct: 61  SLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKC 120

Query: 121 STFTRSC 128
           STFTRSC
Sbjct: 121 STFTRSC 127

[Close]
BLAST of CSPI03G21470.1 vs. ExPASy TrEMBL
Match: A0A0A0KY59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G129550 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 44/119 (36.97%), Postives = 64/119 (53.78%), Query Frame = 0 

Query: 11  MATPTTTTMVAVAIIVVVSTIGASHCKAAS-LNSNLGNETTTAATSSTWCNSLDKECLIG 70
           MAT    +  A+ I+++  TI +S+C AAS L SN  NET TA TS+ +CN L ++C   
Sbjct: 1   MATAAAPSTTAMTILILTLTI-SSYCNAASVLPSNFANETITAMTSTIFCNGLLQQC-FN 60

Query: 71  VEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCL-PQKRPNPIQKCSTFTRSC 128
           VE++ I        Y+T RT +   +VCGR       +C+  Q  P P    S + R+C
Sbjct: 61  VEENGIH------YYSTPRTGSRASSVCGRFYNGSYIKCITTQGSPKPKDCRSAYDRTC 111

[Close]
BLAST of CSPI03G21470.1 vs. NCBI nr
Match: KGN57814.1 (hypothetical protein Csa_009509 [Cucumis sativus])

HSP 1 Score: 252.3 bits (643), Expect = 2.2e-63
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MPHSSNTKTSMATPTTTTMVAVAIIVVVSTIGASHCKAASLNSNLGNETTTAATSSTWCN 60
           MPHSSNTKTSMATPTTTTMVAVAIIVVVSTIGASHCKAASLNSNLGNETTTAATSSTWCN
Sbjct: 1   MPHSSNTKTSMATPTTTTMVAVAIIVVVSTIGASHCKAASLNSNLGNETTTAATSSTWCN 60

Query: 61  SLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKC 120
           SLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKC
Sbjct: 61  SLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKC 120

Query: 121 STFTRSC 128
           STFTRSC
Sbjct: 121 STFTRSC 127

[Close]
BLAST of CSPI03G21470.1 vs. NCBI nr
Match: KGN53789.1 (hypothetical protein Csa_015152 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-04
Identity = 44/119 (36.97%), Postives = 64/119 (53.78%), Query Frame = 0 

Query: 11  MATPTTTTMVAVAIIVVVSTIGASHCKAAS-LNSNLGNETTTAATSSTWCNSLDKECLIG 70
           MAT    +  A+ I+++  TI +S+C AAS L SN  NET TA TS+ +CN L ++C   
Sbjct: 1   MATAAAPSTTAMTILILTLTI-SSYCNAASVLPSNFANETITAMTSTIFCNGLLQQC-FN 60

Query: 71  VEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCL-PQKRPNPIQKCSTFTRSC 128
           VE++ I        Y+T RT +   +VCGR       +C+  Q  P P    S + R+C
Sbjct: 61  VEENGIH------YYSTPRTGSRASSVCGRFYNGSYIKCITTQGSPKPKDCRSAYDRTC 111

The following BLAST results are available for this feature:
BLAST of CSPI03G21470.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G21470.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA121.1e-63100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1[more]
A0A0A0KY591.1e-0436.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G129550 PE=4 SV=1[more]
BLAST of CSPI03G21470.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57814.12.2e-63100.00hypothetical protein Csa_009509 [Cucumis sativus][more]
KGN53789.12.4e-0436.97hypothetical protein Csa_015152 [Cucumis sativus][more]
BLAST of CSPI03G21470.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI03G21470CSPI03G21470gene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G21470.1.utr3p1CSPI03G21470.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G21470.1.cds1CSPI03G21470.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G21470.1.utr5p1CSPI03G21470.1.utr5p1five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI03G21470.1CSPI03G21470.1-proteinpolypeptide