CSPI03G21410.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI03G21410.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionFanconi anemia group M protein isoform X6
LocationChr3: 17647837 .. 17648598 (+)
Sequence length762
RNA-Seq ExpressionCSPI03G21410.1
SyntenyCSPI03G21410.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAAGCTCTTGGTAAACCCAATTCACCAGCCAACTTCTGAACTGCCCACTGCCACTGTAACTCCCTCTTCATTCTGCCTCGGGCCCCACCAAGAATATCCTTTTTGCCCTGATACTCTCCAAGAACCTTGCAACTCCACTATTTTTAATTCTTCCAAAGGAGAAGGAGAAGGAGAAGAGCATAACAAGCGCCAAAATTCAAACTCAAAAAGTCCCCTGTTCAAAGGAAGAAAAGGACCAAACAGAAAGTCCCCTGTTCAAACAGTGGTTAAGGACCTCCAGAAATTCTACATCAAAGGAAGAAGCTCATTTCAAAATGCTTGGACTGCCCTCCTGAATTTTGATTTACTTGAGGAAAGTTGTGTGGAAATTCAAACTTTTGGATTAGAATGCAAAAGGTCAGAAAATAAAGCTCACATCTCTTCAAATTTTAATCTATCTCCTATAAAAATTTCAGACTCGAACATTAATCTTGTGCGAGGTACTCTACATTCAGCGTCAAATATTACAAATTCTGGCGAAGAGAAATTAGATGATGAAGTTTCCATAATCGGTACCAGCACTGAAGAATTAGAACCGTTTAATTTAGAGGAGAGAGATGACGCGTATTTCAAGGCAAATAATCTGGATGATGCATTGGGTCTAGATCTTCCTAAGTTATTTCTCACCCCTGAACCCAAGGTTTGCATTAAAGAATTGGCAGAAAGCTTTCCTGCAGAATTAGTCCCTTTCATTGCTGCTTGTGGAATTGATCTTATC

mRNA sequence

ATGAGGAAGCTCTTGGTAAACCCAATTCACCAGCCAACTTCTGAACTGCCCACTGCCACTGTAACTCCCTCTTCATTCTGCCTCGGGCCCCACCAAGAATATCCTTTTTGCCCTGATACTCTCCAAGAACCTTGCAACTCCACTATTTTTAATTCTTCCAAAGGAGAAGGAGAAGGAGAAGAGCATAACAAGCGCCAAAATTCAAACTCAAAAAGTCCCCTGTTCAAAGGAAGAAAAGGACCAAACAGAAAGTCCCCTGTTCAAACAGTGGTTAAGGACCTCCAGAAATTCTACATCAAAGGAAGAAGCTCATTTCAAAATGCTTGGACTGCCCTCCTGAATTTTGATTTACTTGAGGAAAGTTGTGTGGAAATTCAAACTTTTGGATTAGAATGCAAAAGGTCAGAAAATAAAGCTCACATCTCTTCAAATTTTAATCTATCTCCTATAAAAATTTCAGACTCGAACATTAATCTTGTGCGAGGTACTCTACATTCAGCGTCAAATATTACAAATTCTGGCGAAGAGAAATTAGATGATGAAGTTTCCATAATCGGTACCAGCACTGAAGAATTAGAACCGTTTAATTTAGAGGAGAGAGATGACGCGTATTTCAAGGCAAATAATCTGGATGATGCATTGGGTCTAGATCTTCCTAAGTTATTTCTCACCCCTGAACCCAAGGTTTGCATTAAAGAATTGGCAGAAAGCTTTCCTGCAGAATTAGTCCCTTTCATTGCTGCTTGTGGAATTGATCTTATC

Coding sequence (CDS)

ATGAGGAAGCTCTTGGTAAACCCAATTCACCAGCCAACTTCTGAACTGCCCACTGCCACTGTAACTCCCTCTTCATTCTGCCTCGGGCCCCACCAAGAATATCCTTTTTGCCCTGATACTCTCCAAGAACCTTGCAACTCCACTATTTTTAATTCTTCCAAAGGAGAAGGAGAAGGAGAAGAGCATAACAAGCGCCAAAATTCAAACTCAAAAAGTCCCCTGTTCAAAGGAAGAAAAGGACCAAACAGAAAGTCCCCTGTTCAAACAGTGGTTAAGGACCTCCAGAAATTCTACATCAAAGGAAGAAGCTCATTTCAAAATGCTTGGACTGCCCTCCTGAATTTTGATTTACTTGAGGAAAGTTGTGTGGAAATTCAAACTTTTGGATTAGAATGCAAAAGGTCAGAAAATAAAGCTCACATCTCTTCAAATTTTAATCTATCTCCTATAAAAATTTCAGACTCGAACATTAATCTTGTGCGAGGTACTCTACATTCAGCGTCAAATATTACAAATTCTGGCGAAGAGAAATTAGATGATGAAGTTTCCATAATCGGTACCAGCACTGAAGAATTAGAACCGTTTAATTTAGAGGAGAGAGATGACGCGTATTTCAAGGCAAATAATCTGGATGATGCATTGGGTCTAGATCTTCCTAAGTTATTTCTCACCCCTGAACCCAAGGTTTGCATTAAAGAATTGGCAGAAAGCTTTCCTGCAGAATTAGTCCCTTTCATTGCTGCTTGTGGAATTGATCTTATC

Protein sequence

MRKLLVNPIHQPTSELPTATVTPSSFCLGPHQEYPFCPDTLQEPCNSTIFNSSKGEGEGEEHNKRQNSNSKSPLFKGRKGPNRKSPVQTVVKDLQKFYIKGRSSFQNAWTALLNFDLLEESCVEIQTFGLECKRSENKAHISSNFNLSPIKISDSNINLVRGTLHSASNITNSGEEKLDDEVSIIGTSTEELEPFNLEERDDAYFKANNLDDALGLDLPKLFLTPEPKVCIKELAESFPAELVPFIAACGIDLI
Homology
[Close]
BLAST of CSPI03G21410.1 vs. ExPASy TrEMBL
Match: A0A5A7T298 (Fanconi anemia group M protein isoform X6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G001860 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.4e-22
Identity = 74/124 (59.68%), Postives = 85/124 (68.55%), Query Frame = 0 

Query: 136  ENKAHISSNFNLS---PIKISDSNINLVRGTLHSASNITNSGEEKLDDEVSIIGTSTEEL 195
            E +A +SS+  LS     KI  S  + +   + SAS  +   E    D ++I   S+EEL
Sbjct: 994  EEEAEVSSDATLSGDEDDKIKSSFDSFIDDRV-SASASSTQDETSKPDMMAIY--SSEEL 1053

Query: 196  EPFNLEERDD--AYFKANNLDDALGLDLPKLFLTPEPKVCIKELAESFPAELVPFIAACG 255
            EP +LEERDD  A FK NNLDDALG DLPKLFLTPEPK C KELAESFPAELVPFIAACG
Sbjct: 1054 EPVSLEERDDKLAEFKVNNLDDALGPDLPKLFLTPEPKACYKELAESFPAELVPFIAACG 1113

[Close]
BLAST of CSPI03G21410.1 vs. ExPASy TrEMBL
Match: A0A5A7TTX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00450 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.7e-10
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 0 

Query: 82  NRKSPVQTVVKDLQK------FYIKGRSSFQNAWTALLNFDLLEESCVEIQTFGLECKRS 139
           N+  P   + KDL+K      FYIKGRSSFQNAW AL+N DLLEES V+IQT G+ECKR 
Sbjct: 3   NQNFPCTNIGKDLKKFKSSLRFYIKGRSSFQNAWAALMNSDLLEESGVKIQTLGVECKRG 62

[Close]
BLAST of CSPI03G21410.1 vs. NCBI nr
Match: KAE8652235.1 (hypothetical protein Csa_023977, partial [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 9.0e-40
Identity = 92/115 (80.00%), Postives = 104/115 (90.43%), Query Frame = 0 

Query: 136 ENKAHISSNFNLSPIKISDSNINLVRGTLHSASNITNSGEEKLDDEVSIIGTSTEELEPF 195
           ENK HISS+FNLSPIKIS+S+INLVRGTLHS+SNITNS +EKLDDEVSI+ TS+EELE  
Sbjct: 2   ENKTHISSSFNLSPIKISNSSINLVRGTLHSSSNITNSEKEKLDDEVSIVSTSSEELELV 61

Query: 196 NLEERDD--AYFKANNLDDALGLDLPKLFLTPEPKVCIKELAESFPAELVPFIAA 249
           +L+ERDD  A F+ANNLDD+LGLDLPKLFLTPEPK C KELAESF AELVP+IAA
Sbjct: 62  SLDERDDVLAEFEANNLDDSLGLDLPKLFLTPEPKACCKELAESFHAELVPYIAA 116

[Close]
BLAST of CSPI03G21410.1 vs. NCBI nr
Match: KAA0037083.1 (Fanconi anemia group M protein isoform X6 [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 5.0e-22
Identity = 74/124 (59.68%), Postives = 85/124 (68.55%), Query Frame = 0 

Query: 136  ENKAHISSNFNLS---PIKISDSNINLVRGTLHSASNITNSGEEKLDDEVSIIGTSTEEL 195
            E +A +SS+  LS     KI  S  + +   + SAS  +   E    D ++I   S+EEL
Sbjct: 994  EEEAEVSSDATLSGDEDDKIKSSFDSFIDDRV-SASASSTQDETSKPDMMAIY--SSEEL 1053

Query: 196  EPFNLEERDD--AYFKANNLDDALGLDLPKLFLTPEPKVCIKELAESFPAELVPFIAACG 255
            EP +LEERDD  A FK NNLDDALG DLPKLFLTPEPK C KELAESFPAELVPFIAACG
Sbjct: 1054 EPVSLEERDDKLAEFKVNNLDDALGPDLPKLFLTPEPKACYKELAESFPAELVPFIAACG 1113

[Close]
BLAST of CSPI03G21410.1 vs. NCBI nr
Match: KAA0045287.1 (uncharacterized protein E6C27_scaffold316G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 9.8e-10
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 0 

Query: 82  NRKSPVQTVVKDLQK------FYIKGRSSFQNAWTALLNFDLLEESCVEIQTFGLECKRS 139
           N+  P   + KDL+K      FYIKGRSSFQNAW AL+N DLLEES V+IQT G+ECKR 
Sbjct: 3   NQNFPCTNIGKDLKKFKSSLRFYIKGRSSFQNAWAALMNSDLLEESGVKIQTLGVECKRG 62

The following BLAST results are available for this feature:
BLAST of CSPI03G21410.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G21410.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T2982.4e-2259.68Fanconi anemia group M protein isoform X6 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A5A7TTX54.7e-1060.32Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of CSPI03G21410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652235.19.0e-4080.00hypothetical protein Csa_023977, partial [Cucumis sativus][more]
KAA0037083.15.0e-2259.68Fanconi anemia group M protein isoform X6 [Cucumis melo var. makuwa][more]
KAA0045287.19.8e-1060.32uncharacterized protein E6C27_scaffold316G00450 [Cucumis melo var. makuwa][more]
BLAST of CSPI03G21410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..87

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI03G21410CSPI03G21410gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G21410.mrna.cds.1CSPI03G21410.mrna.cds.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI03G21410.1CSPI03G21410.1-proteinpolypeptide