CSPI03G21160.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI03G21160.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	THO complex subunit 4D
Location	Chr3: 17274416 .. 17276127 (+)
Sequence length	378
RNA-Seq Expression	CSPI03G21160.1
Synteny	CSPI03G21160.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCAGTTATTAGGGTATCAGTTGCAAGACCATTTTGTAATTATGATATCAAACTATTTCTTTTGGACTGGAGTCCCTTCTATAGTTAATGTTGAGCTCTTGTCTTCTGGGCCGTATGTTTGTTTGCCCTTGTACTCTTTCATTTTTTCAATGGAAATTGGTCTTAAAAGAAAAAGGAAGAAAAAAGGAACAAAGGGAAAAAGTTACATATTGTTTAGATTTGTTAAAATTTTCATGCTGTCCTTTGGAAATTGTACTTCTAACATGTTTGATGAAAAGAAACATAATCTGCTTTGATTAGTAATATTAAGATTTGTTGGGTATATGCAGGTCTGAATCTGGTCGTAATGCTACTTCCAACGTGGTTAACTCTTTTCCTGGGTAAGTTCTAACTAGACATTGCTTTTGGCATGAGATTTTTATATTCAATAGCAGAGTAGCTGGGTTTTATTATTACTATTATTATTTTGTTCTGGGATTGTTTTACTGCCTGATAGTTGGATTGGTTTTGAAGTCATTTGTTCTTGGTTACTCATATCTTTGATTTTCATAGGGGTGTTAGAATTGGGAGTTATATTTTCTCTACCTGTTTGGAAGTGTGGGAAACAAGCTACTGAAATATTACCACCTTTTTGCTTTCCTTTTCTAATTTTTTTTTATGATTGAAAATTATTTGGTATGATAATATTTAATACATTTTTTAGAATAAGAAAATAGAACTGATAACAAATGTTTCGCAATACTTTTGTGTTTGTTTCCTAAATTTTTATGAATCAACTCTTTAAATATGCCCCAATTATTTTTGAAAATTAATATGAGGAAAAGATATGAAAATTAAAAAACAGAACTTTTCTTCTAGTTTTCTGTAAGGTCAAATTTACGTTCAGTCTTAACTTTTTTGTTTTTGTTACTAAATTTTAAAAAGTGTCTCATAAGTCTTTTTTATTATTATTTTTCTATTAATGAGAAACAAGAACGTAACCTATAGGCCTATGGGATGAGAGGTCCCTAAGCCTTAATTGTTCTCTAATGTGTATTTTAAGAAGAATTGTGCAAAGTTCTCCACGTGGAGGCCATAAGTTGTACGTTTTCATCAAGTGTCAGTAAGTCCTTATCTTTCAACTATTGTGTATAATAAGTTGTTGACTTATTCAATATTTTCTTTAAAATTCATGGATCTACTAGAATACAAAATTGAAGGTTTTGGGTTCAAATTCAACTTTATATCTAATTGAACATAAACTTTCTTCAAAAATTGATTATTCTAGGCACTTGTTTGACATAAAATTGTTGGAAGTTCAAAGAAAGCAATCAGTGTGTAGGATATTCGATCTCTTGGAACTGGATGAGTTTGAGGCCATTCTTGATAGTAGTCACTGAAAGTATCCTTTGAAAGGTTTTGAAAAGTGTAGGTTAAGTGGGAAATGAAGTGAGATGAATCAACTTTGGTTGTTCTTATTACTGTATGGGTTTATTGAAACTTTTGTGTTTTGTATAGTCCAAGCCATCGTGGAGGCCTGAGGAATGCTCGTGGCCGTGGGCGAGGTGCTTGGAGCCGTGGTGTAGGTCTAGGAGGAGGAAGTGGAGGAGGCCGTGGCCGAGGGCGTGGTCGTGGCCGTGGGCAAGGAAGGAAAAAACCTGTAGAGAAGTCCTCAGATGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGA

mRNA sequence

ATGTTTCAGTTATTAGGGTATCAGTTGCAAGACCATTTTGTAATTATGATATCAAACTATTTCTTTTGGACTGGAGTCCCTTCTATAGTTAATGTTGAGCTCTTGTCTTCTGGGCCGTCTGAATCTGGTCGTAATGCTACTTCCAACGTGGTTAACTCTTTTCCTGGTCCAAGCCATCGTGGAGGCCTGAGGAATGCTCGTGGCCGTGGGCGAGGTGCTTGGAGCCGTGGTGTAGGTCTAGGAGGAGGAAGTGGAGGAGGCCGTGGCCGAGGGCGTGGTCGTGGCCGTGGGCAAGGAAGGAAAAAACCTGTAGAGAAGTCCTCAGATGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGA

Coding sequence (CDS)

ATGTTTCAGTTATTAGGGTATCAGTTGCAAGACCATTTTGTAATTATGATATCAAACTATTTCTTTTGGACTGGAGTCCCTTCTATAGTTAATGTTGAGCTCTTGTCTTCTGGGCCGTCTGAATCTGGTCGTAATGCTACTTCCAACGTGGTTAACTCTTTTCCTGGTCCAAGCCATCGTGGAGGCCTGAGGAATGCTCGTGGCCGTGGGCGAGGTGCTTGGAGCCGTGGTGTAGGTCTAGGAGGAGGAAGTGGAGGAGGCCGTGGCCGAGGGCGTGGTCGTGGCCGTGGGCAAGGAAGGAAAAAACCTGTAGAGAAGTCCTCAGATGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGA

Protein sequence

MFQLLGYQLQDHFVIMISNYFFWTGVPSIVNVELLSSGPSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT*

Homology

[Close]

BLAST of CSPI03G21160.1 vs. ExPASy Swiss-Prot
Match: Q94EH8 (THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 43/85 (50.59%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 54  FPGPSHRGGLRNARGRGRGAWSRGV--------GLGGGSGGGRGRGRGRGRGQGR----- 113
           F G   RGG R  RGRG G   R +        G+  G GG RGRGRG G G+G      
Sbjct: 209 FIGQGVRGG-RVGRGRGSGPSGRRLPLQQNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGR 268

Query: 114 --KKPVEKSSDELDKELENYHAEAM 124
             KKPVEKS+ +LDK+LE+YHAEAM
Sbjct: 269 GGKKPVEKSAADLDKDLESYHAEAM 292

[Close]

BLAST of CSPI03G21160.1 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.4e-04
Identity = 43/86 (50.00%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 56  GPSHRGGLRNAR-GRGRGAW---------SRGVGLGGGSGGGRGRGR---GRGRGQGR-- 115
           G   RG +R  R GRG              +G G+ GG GG R RGR   GRGRG GR  
Sbjct: 202 GGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGGGMRGGRGGFRARGRGNGGRGRGGGRGN 261

Query: 116 -KKPVEKSSDELDKELENYHAEAMQT 126
            KKPVEKS+ +LDK+LE+YHA+AM T
Sbjct: 262 GKKPVEKSAADLDKDLESYHADAMNT 287

[Close]

BLAST of CSPI03G21160.1 vs. ExPASy TrEMBL
Match: A0A0A0LCJ7 (FoP_duplication domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G302110 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 5.2e-50
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 16  MISNYFFWTGVPSIVNVELLSSGPSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWS 75
           MISNYFFWTGVPSIVNVELLSSGPSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWS
Sbjct: 1   MISNYFFWTGVPSIVNVELLSSGPSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWS 60

Query: 76  RGVGLGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 126
           RGVGLGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT
Sbjct: 61  RGVGLGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 110

[Close]

BLAST of CSPI03G21160.1 vs. ExPASy TrEMBL
Match: A0A1S3C452 (THO complex subunit 4D OS=Cucumis melo OX=3656 GN=LOC103496802 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 8.3e-32
Identity = 81/85 (95.29%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 41  ESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGQGR 100
           ESGRNAT NVVN FPGPSHRGGLRNARGRGRGAW+RGVGL GGSGGGRGRGRGRGRGQGR
Sbjct: 202 ESGRNATFNVVNPFPGPSHRGGLRNARGRGRGAWTRGVGL-GGSGGGRGRGRGRGRGQGR 261

Query: 101 KKPVEKSSDELDKELENYHAEAMQT 126
           KKPVEKSSDELDKELENYHAEAMQT
Sbjct: 262 KKPVEKSSDELDKELENYHAEAMQT 285

[Close]

BLAST of CSPI03G21160.1 vs. ExPASy TrEMBL
Match: A0A6J1J564 (THO complex subunit 4D-like OS=Cucurbita maxima OX=3661 GN=LOC111481464 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 6.4e-24
Identity = 74/105 (70.48%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 40  SESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSG---------GGRGR 99
           SESGR  +SN VN FPGPSHRGGLR+ RGRGRG WSRG+G GGG G         GGRGR
Sbjct: 201 SESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGGWSRGLGGGGGRGLGGGGGRGLGGRGR 260

Query: 100 GR----------GRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 126
           GR          GRGRGQGRKKPVEKSS ELDKELENYHAEAMQT
Sbjct: 261 GRGRGSGSGSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT 305

[Close]

BLAST of CSPI03G21160.1 vs. ExPASy TrEMBL
Match: A0A6J1FAB9 (THO complex subunit 4D-like OS=Cucurbita moschata OX=3662 GN=LOC111442248 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.4e-23
Identity = 73/95 (76.84%), Postives = 77/95 (81.05%), Query Frame = 0


Query: 40  SESGRNATSNVVNSFPGPSHRGGLRN--ARGRGRGAWSRGVGLGGG---SGGGRGRGR-- 99
           SESGR  +S+ VN FPGPSHRGGLR+   RGRGRG WSRG+G GGG    GGGRGRGR  
Sbjct: 201 SESGRTGSSHAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGS 260

Query: 100 --GRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 126
             GRGRGQGRKKPVEKSS ELDKELENYHAEAMQT
Sbjct: 261 GSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT 295

[Close]

BLAST of CSPI03G21160.1 vs. ExPASy TrEMBL
Match: A0A6J1CP51 (THO complex subunit 4D-like OS=Momordica charantia OX=3673 GN=LOC111013262 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.3e-20
Identity = 67/86 (77.91%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 40  SESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGQG 99
           SESGR  +S VVN FPGPS+RG LR  RGRGRG WSRG    G  GGGRGRGRGRGRG G
Sbjct: 200 SESGRTDSSTVVNHFPGPSNRGALR-GRGRGRGGWSRG---QGQVGGGRGRGRGRGRGLG 259

Query: 100 RKKPVEKSSDELDKELENYHAEAMQT 126
           RKK VEKSSDELDK+LENYHAEAMQT
Sbjct: 260 RKKTVEKSSDELDKDLENYHAEAMQT 281

[Close]

BLAST of CSPI03G21160.1 vs. NCBI nr
Match: XP_004145851.1 (THO complex subunit 4D [Cucumis sativus] >KAE8650594.1 hypothetical protein Csa_011773 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 2.5e-35
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 40  SESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGQG 99
           SESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGQG
Sbjct: 201 SESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGQG 260

Query: 100 RKKPVEKSSDELDKELENYHAEAMQT 126
           RKKPVEKSSDELDKELENYHAEAMQT
Sbjct: 261 RKKPVEKSSDELDKELENYHAEAMQT 286

[Close]

BLAST of CSPI03G21160.1 vs. NCBI nr
Match: XP_008457020.1 (PREDICTED: THO complex subunit 4D [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 1.7e-31
Identity = 81/85 (95.29%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 41  ESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGQGR 100
           ESGRNAT NVVN FPGPSHRGGLRNARGRGRGAW+RGVGL GGSGGGRGRGRGRGRGQGR
Sbjct: 202 ESGRNATFNVVNPFPGPSHRGGLRNARGRGRGAWTRGVGL-GGSGGGRGRGRGRGRGQGR 261

Query: 101 KKPVEKSSDELDKELENYHAEAMQT 126
           KKPVEKSSDELDKELENYHAEAMQT
Sbjct: 262 KKPVEKSSDELDKELENYHAEAMQT 285

[Close]

BLAST of CSPI03G21160.1 vs. NCBI nr
Match: XP_038896761.1 (THO complex subunit 4D-like [Benincasa hispida])

HSP 1 Score: 137.9 bits (346), Expect = 6.1e-29
Identity = 76/85 (89.41%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 41  ESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGQGR 100
           ESGR A+SNVVN FPGPSHRGGLRN RGRGRG W+RG G+GGG GGGRGRGRGRGRGQGR
Sbjct: 202 ESGRTASSNVVNPFPGPSHRGGLRNGRGRGRGGWNRGQGVGGG-GGGRGRGRGRGRGQGR 261

Query: 101 KKPVEKSSDELDKELENYHAEAMQT 126
           KKPVEKSSDELDKELENYHAEAMQT
Sbjct: 262 KKPVEKSSDELDKELENYHAEAMQT 285

[Close]

BLAST of CSPI03G21160.1 vs. NCBI nr
Match: XP_023527122.1 (THO complex subunit 4D [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-23
Identity = 74/95 (77.89%), Postives = 77/95 (81.05%), Query Frame = 0


Query: 40  SESGRNATSNVVNSFPGPSHRGGLRN--ARGRGRGAWSRGVGLGGG---SGGGRGRGR-- 99
           SESGR  +SN VN FPGPSHRGGLR+   RGRGRG WSRG+G GGG    GGGRGRGR  
Sbjct: 201 SESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGS 260

Query: 100 --GRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 126
             GRGRGQGRKKPVEKSS ELDKELENYHAEAMQT
Sbjct: 261 GSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT 295

[Close]

BLAST of CSPI03G21160.1 vs. NCBI nr
Match: XP_022982649.1 (THO complex subunit 4D-like [Cucurbita maxima] >XP_022982650.1 THO complex subunit 4D-like [Cucurbita maxima] >XP_022982651.1 THO complex subunit 4D-like [Cucurbita maxima])

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-23
Identity = 74/105 (70.48%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 40  SESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSG---------GGRGR 99
           SESGR  +SN VN FPGPSHRGGLR+ RGRGRG WSRG+G GGG G         GGRGR
Sbjct: 201 SESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGGWSRGLGGGGGRGLGGGGGRGLGGRGR 260

Query: 100 GR----------GRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 126
           GR          GRGRGQGRKKPVEKSS ELDKELENYHAEAMQT
Sbjct: 261 GRGRGSGSGSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT 305

[Close]

BLAST of CSPI03G21160.1 vs. TAIR 10
Match: AT1G66260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 47.8 bits (112), Expect = 7.7e-06
Identity = 43/85 (50.59%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 54  FPGPSHRGGLRNARGRGRGAWSRGV--------GLGGGSGGGRGRGRGRGRGQGR----- 113
           F G   RGG R  RGRG G   R +        G+  G GG RGRGRG G G+G      
Sbjct: 209 FIGQGVRGG-RVGRGRGSGPSGRRLPLQQNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGR 268

Query: 114 --KKPVEKSSDELDKELENYHAEAM 124
             KKPVEKS+ +LDK+LE+YHAEAM
Sbjct: 269 GGKKPVEKSAADLDKDLESYHAEAM 292

[Close]

BLAST of CSPI03G21160.1 vs. TAIR 10
Match: AT1G66260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 47.8 bits (112), Expect = 7.7e-06
Identity = 43/85 (50.59%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 54  FPGPSHRGGLRNARGRGRGAWSRGV--------GLGGGSGGGRGRGRGRGRGQGR----- 113
           F G   RGG R  RGRG G   R +        G+  G GG RGRGRG G G+G      
Sbjct: 209 FIGQGVRGG-RVGRGRGSGPSGRRLPLQQNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGR 268

Query: 114 --KKPVEKSSDELDKELENYHAEAM 124
             KKPVEKS+ +LDK+LE+YHAEAM
Sbjct: 269 GGKKPVEKSAADLDKDLESYHAEAM 292

[Close]

BLAST of CSPI03G21160.1 vs. TAIR 10
Match: AT5G37720.2 (ALWAYS EARLY 4 )

HSP 1 Score: 45.8 bits (107), Expect = 2.9e-05
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 55  PGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKE 114
           P  S R  + N +G G      G    G   GGRGRG GRG G   KKPVEKS+ +LDK+
Sbjct: 212 PTVSRRLPIHNQQGGGMRGGRGGFRARGRGNGGRGRGGGRGNG---KKPVEKSAADLDKD 271

Query: 115 LENYHAEAMQT 126
           LE+YHA+AM T
Sbjct: 272 LESYHADAMNT 279

[Close]

BLAST of CSPI03G21160.1 vs. TAIR 10
Match: AT5G37720.1 (ALWAYS EARLY 4 )

HSP 1 Score: 45.4 bits (106), Expect = 3.8e-05
Identity = 43/86 (50.00%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 56  GPSHRGGLRNAR-GRGRGAW---------SRGVGLGGGSGGGRGRGR---GRGRGQGR-- 115
           G   RG +R  R GRG              +G G+ GG GG R RGR   GRGRG GR  
Sbjct: 202 GGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGGGMRGGRGGFRARGRGNGGRGRGGGRGN 261

Query: 116 -KKPVEKSSDELDKELENYHAEAMQT 126
            KKPVEKS+ +LDK+LE+YHA+AM T
Sbjct: 262 GKKPVEKSAADLDKDLESYHADAMNT 287

The following BLAST results are available for this feature:

BLAST of CSPI03G21160.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94EH8	1.1e-04	50.59	THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1	[more]
Q6NQ72	5.4e-04	50.00	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]

BLAST of CSPI03G21160.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCJ7	5.2e-50	100.00	FoP_duplication domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G30...	[more]
A0A1S3C452	8.3e-32	95.29	THO complex subunit 4D OS=Cucumis melo OX=3656 GN=LOC103496802 PE=4 SV=1	[more]
A0A6J1J564	6.4e-24	70.48	THO complex subunit 4D-like OS=Cucurbita maxima OX=3661 GN=LOC111481464 PE=4 SV=...	[more]
A0A6J1FAB9	2.4e-23	76.84	THO complex subunit 4D-like OS=Cucurbita moschata OX=3662 GN=LOC111442248 PE=4 S...	[more]
A0A6J1CP51	4.3e-20	77.91	THO complex subunit 4D-like OS=Momordica charantia OX=3673 GN=LOC111013262 PE=4 ...	[more]

BLAST of CSPI03G21160.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145851.1	2.5e-35	100.00	THO complex subunit 4D [Cucumis sativus] >KAE8650594.1 hypothetical protein Csa_...	[more]
XP_008457020.1	1.7e-31	95.29	PREDICTED: THO complex subunit 4D [Cucumis melo]	[more]
XP_038896761.1	6.1e-29	89.41	THO complex subunit 4D-like [Benincasa hispida]	[more]
XP_023527122.1	1.3e-23	77.89	THO complex subunit 4D [Cucurbita pepo subsp. pepo]	[more]
XP_022982649.1	1.3e-23	70.48	THO complex subunit 4D-like [Cucurbita maxima] >XP_022982650.1 THO complex subun...	[more]

BLAST of CSPI03G21160.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66260.1	7.7e-06	50.59	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G66260.2	7.7e-06	50.59	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G37720.2	2.9e-05	50.70	ALWAYS EARLY 4	[more]
AT5G37720.1	3.8e-05	50.00	ALWAYS EARLY 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 108..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..125
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 60..125 e-value: 4.2E-11 score: 52.9
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 62..120 e-value: 1.1E-7 score: 32.4

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G21160	CSPI03G21160	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G21160.1.cds1	CSPI03G21160.1.cds1	CDS
CSPI03G21160.1.cds2	CSPI03G21160.1.cds2	CDS
CSPI03G21160.1.cds3	CSPI03G21160.1.cds3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G21160.1	CSPI03G21160.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding