CSPI03G05090.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI03G05090.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 4132211 .. 4132564 (+)
Sequence length354
RNA-Seq ExpressionCSPI03G05090.1
SyntenyCSPI03G05090.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCAAGAATGGACGCCTATACTAACGCCTCGTCAAGCCAATGTCCTTCTATGTCATGTTGGGTGTTCCCTATTGTCGACATAGAAGTTGACGTCGGCAATACCATATTGCGACATATTGATCGGACATCGAACATGACTTTTTCCCGATTTTTTGTACCAGTCAGCGAAGCTTGCGTTAGGCAAAAGGTATTGCCGACGTTGTCTCGTTTTCGTGTCAGTTTTGTCTCCCCCGACGCAATACTGACACTCTCCCCAACATGGTTTTCTGTGTTGGGAGAGACATTTTCGACACGTTTTGTGATTTTGACCGACATATGTATGCATCAGGATAACCACTACTTCTTGTAG

mRNA sequence

ATGGCGTCAAGAATGGACGCCTATACTAACGCCTCGTCAAGCCAATGTCCTTCTATGTCATGTTGGGTGTTCCCTATTGTCGACATAGAAGTTGACGTCGGCAATACCATATTGCGACATATTGATCGGACATCGAACATGACTTTTTCCCGATTTTTTGTACCAGTCAGCGAAGCTTGCGTTAGGCAAAAGGTATTGCCGACGTTGTCTCGTTTTCGTGTCAGTTTTGTCTCCCCCGACGCAATACTGACACTCTCCCCAACATGGTTTTCTGTGTTGGGAGAGACATTTTCGACACGTTTTGTGATTTTGACCGACATATGTATGCATCAGGATAACCACTACTTCTTGTAG

Coding sequence (CDS)

ATGGCGTCAAGAATGGACGCCTATACTAACGCCTCGTCAAGCCAATGTCCTTCTATGTCATGTTGGGTGTTCCCTATTGTCGACATAGAAGTTGACGTCGGCAATACCATATTGCGACATATTGATCGGACATCGAACATGACTTTTTCCCGATTTTTTGTACCAGTCAGCGAAGCTTGCGTTAGGCAAAAGGTATTGCCGACGTTGTCTCGTTTTCGTGTCAGTTTTGTCTCCCCCGACGCAATACTGACACTCTCCCCAACATGGTTTTCTGTGTTGGGAGAGACATTTTCGACACGTTTTGTGATTTTGACCGACATATGTATGCATCAGGATAACCACTACTTCTTGTAG

Protein sequence

MASRMDAYTNASSSQCPSMSCWVFPIVDIEVDVGNTILRHIDRTSNMTFSRFFVPVSEACVRQKVLPTLSRFRVSFVSPDAILTLSPTWFSVLGETFSTRFVILTDICMHQDNHYFL*
Homology
[Close]
BLAST of CSPI03G05090.1 vs. ExPASy TrEMBL
Match: A0A0A0L520 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077590 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.3e-60
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MASRMDAYTNASSSQCPSMSCWVFPIVDIEVDVGNTILRHIDRTSNMTFSRFFVPVSEAC 60
           MASRMDAYTNASSSQCPSMSCWVFPIVDIEVDVGNTILRHIDRTSNMTFSRFFVPVSEAC
Sbjct: 1   MASRMDAYTNASSSQCPSMSCWVFPIVDIEVDVGNTILRHIDRTSNMTFSRFFVPVSEAC 60

Query: 61  VRQKVLPTLSRFRVSFVSPDAILTLSPTWFSVLGETFSTRFVILTDICMHQDNHYFL 118
           VRQKVLPTLSRFRVSFVSPDAILTLSPTWFSVLGETFSTRFVILTDICMHQDNHYFL
Sbjct: 61  VRQKVLPTLSRFRVSFVSPDAILTLSPTWFSVLGETFSTRFVILTDICMHQDNHYFL 117

[Close]
BLAST of CSPI03G05090.1 vs. NCBI nr
Match: KGN56124.1 (hypothetical protein Csa_011266 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 4.8e-60
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MASRMDAYTNASSSQCPSMSCWVFPIVDIEVDVGNTILRHIDRTSNMTFSRFFVPVSEAC 60
           MASRMDAYTNASSSQCPSMSCWVFPIVDIEVDVGNTILRHIDRTSNMTFSRFFVPVSEAC
Sbjct: 1   MASRMDAYTNASSSQCPSMSCWVFPIVDIEVDVGNTILRHIDRTSNMTFSRFFVPVSEAC 60

Query: 61  VRQKVLPTLSRFRVSFVSPDAILTLSPTWFSVLGETFSTRFVILTDICMHQDNHYFL 118
           VRQKVLPTLSRFRVSFVSPDAILTLSPTWFSVLGETFSTRFVILTDICMHQDNHYFL
Sbjct: 61  VRQKVLPTLSRFRVSFVSPDAILTLSPTWFSVLGETFSTRFVILTDICMHQDNHYFL 117

The following BLAST results are available for this feature:
BLAST of CSPI03G05090.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G05090.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5202.3e-60100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077590 PE=4 SV=1[more]
BLAST of CSPI03G05090.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56124.14.8e-60100.00hypothetical protein Csa_011266 [Cucumis sativus][more]
BLAST of CSPI03G05090.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI03G05090CSPI03G05090gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G05090.1.cds1CSPI03G05090.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI03G05090.1CSPI03G05090.1-proteinpolypeptide