CSPI02G22400.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI02G22400.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr2: 19509819 .. 19510259 (-)
Sequence length249
RNA-Seq ExpressionCSPI02G22400.1
SyntenyCSPI02G22400.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCACATATACTGGATCGCACGAACCATCGATGCTTTTCCAAGAAAGAGGCAAGAAACTAAACACATGGACAGGAAGAGAAGAGAAGCACAACCAGCTTGTAGAGTATCGAATTACAACTACTTAGCTGTAGTTTTTGAAGAAATGCCGACAAATTGTGGTTGCTGGACGAGAAAATTGATCTTCGATCTTGGATCCAGGAGTTTACGACGATCTCCGATGAACCCTAGTTGAAATGGCGGTAGAGGGGAAATACTTGTTCCAGAAATTTGTTGGAAATGATTTACAAGAAAGAGAGAGAGAAGTGGTGTAAACTGGCAGCGTAGCTTCCAAGCTGAATCGGCAATTTACAGTAGCCCACCAGTGTCCCACGATCTTCGGGATTTAACGGTTCTCTGTGCTCTGACCGGCGGCTTCCGGCAATCGTATCGTTATTAA

mRNA sequence

ATGCCGCACATATACTGGATCGCACGAACCATCGATGCTTTTCCAAGAAAGAGGCAAGAAACTAAACACATGGACAGGAAGAGAAGAGAAGCACAACCAGCTTGTAGAGTATCGAATTACAACTACTTAGCTCGTAGCTTCCAAGCTGAATCGGCAATTTACAGTAGCCCACCAGTGTCCCACGATCTTCGGGATTTAACGGTTCTCTGTGCTCTGACCGGCGGCTTCCGGCAATCGTATCGTTATTAA

Coding sequence (CDS)

ATGCCGCACATATACTGGATCGCACGAACCATCGATGCTTTTCCAAGAAAGAGGCAAGAAACTAAACACATGGACAGGAAGAGAAGAGAAGCACAACCAGCTTGTAGAGTATCGAATTACAACTACTTAGCTCGTAGCTTCCAAGCTGAATCGGCAATTTACAGTAGCCCACCAGTGTCCCACGATCTTCGGGATTTAACGGTTCTCTGTGCTCTGACCGGCGGCTTCCGGCAATCGTATCGTTATTAA

Protein sequence

MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVSHDLRDLTVLCALTGGFRQSYRY*
Homology
[Close]
BLAST of CSPI02G22400.1 vs. ExPASy TrEMBL
Match: A0A0A0LLL1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G375220 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.2e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVS 60
          MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVS
Sbjct: 1  MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVS 60

Query: 61 HDLRDLTVLCALTGGFRQSYRY 83
          HDLRDLTVLCALTGGFRQSYRY
Sbjct: 61 HDLRDLTVLCALTGGFRQSYRY 82

[Close]
BLAST of CSPI02G22400.1 vs. NCBI nr
Match: KGN62830.1 (hypothetical protein Csa_022018 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 6.6e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVS 60
          MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVS
Sbjct: 1  MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVS 60

Query: 61 HDLRDLTVLCALTGGFRQSYRY 83
          HDLRDLTVLCALTGGFRQSYRY
Sbjct: 61 HDLRDLTVLCALTGGFRQSYRY 82

The following BLAST results are available for this feature:
BLAST of CSPI02G22400.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI02G22400.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLL13.2e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G375220 PE=4 SV=1[more]
BLAST of CSPI02G22400.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62830.16.6e-40100.00hypothetical protein Csa_022018 [Cucumis sativus][more]
BLAST of CSPI02G22400.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI02G22400CSPI02G22400gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G22400.1.cds2CSPI02G22400.1.cds2CDS
CSPI02G22400.1.cds1CSPI02G22400.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI02G22400.1CSPI02G22400.1-proteinpolypeptide