CSPI02G09320.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI02G09320.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Protein MNN4-like
Location	Chr2: 9015462 .. 9015845 (-)
Sequence length	384
RNA-Seq Expression	CSPI02G09320.1
Synteny	CSPI02G09320.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCGGATTTTGAAAATAAAAGTGAAAGCACATGGCATTAAGGCCTTGGCGCAAGAGAAGCAAGAAACGAACTTGAGGGAGTGGGAAGAGCTCCACAGCAAAGCTGATGAGGTGGCCCTTTCAGTAGAGAAGGACAAAGAAAAAGAAAAAGAAAAGGGAGATCAGGAAATCGCTGAGGAGCTTGAGAAAGAAATTGGTCAGATGAGTTCTTTGGAGGAAGAAGCGCCAAGACGACAGAAGAGAATAAGCAAAGTGTCAAAGAAGTTTTTACACGCACAAGTAGAGATGAGGCGAAAAGCGAAGGACAAGGAAGCGCTTCAAAAGGATGATGAAGAAGAAGACGGAGAGAGTGCATCAGAAGAATCACTCTCGGCCTCGTAG

mRNA sequence

ATGTCTCGGATTTTGAAAATAAAAGTGAAAGCACATGGCATTAAGGCCTTGGCGCAAGAGAAGCAAGAAACGAACTTGAGGGAGTGGGAAGAGCTCCACAGCAAAGCTGATGAGGTGGCCCTTTCAGTAGAGAAGGACAAAGAAAAAGAAAAAGAAAAGGGAGATCAGGAAATCGCTGAGGAGCTTGAGAAAGAAATTGGTCAGATGAGTTCTTTGGAGGAAGAAGCGCCAAGACGACAGAAGAGAATAAGCAAAGTGTCAAAGAAGTTTTTACACGCACAAGTAGAGATGAGGCGAAAAGCGAAGGACAAGGAAGCGCTTCAAAAGGATGATGAAGAAGAAGACGGAGAGAGTGCATCAGAAGAATCACTCTCGGCCTCGTAG

Coding sequence (CDS)

ATGTCTCGGATTTTGAAAATAAAAGTGAAAGCACATGGCATTAAGGCCTTGGCGCAAGAGAAGCAAGAAACGAACTTGAGGGAGTGGGAAGAGCTCCACAGCAAAGCTGATGAGGTGGCCCTTTCAGTAGAGAAGGACAAAGAAAAAGAAAAAGAAAAGGGAGATCAGGAAATCGCTGAGGAGCTTGAGAAAGAAATTGGTCAGATGAGTTCTTTGGAGGAAGAAGCGCCAAGACGACAGAAGAGAATAAGCAAAGTGTCAAAGAAGTTTTTACACGCACAAGTAGAGATGAGGCGAAAAGCGAAGGACAAGGAAGCGCTTCAAAAGGATGATGAAGAAGAAGACGGAGAGAGTGCATCAGAAGAATCACTCTCGGCCTCGTAG

Protein sequence

MSRILKIKVKAHGIKALAQEKQETNLREWEELHSKADEVALSVEKDKEKEKEKGDQEIAEELEKEIGQMSSLEEEAPRRQKRISKVSKKFLHAQVEMRRKAKDKEALQKDDEEEDGESASEESLSAS*

Homology

[Close]

BLAST of CSPI02G09320.1 vs. ExPASy TrEMBL
Match: A0A0A0LNF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G145900 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 8.9e-50
Identity = 122/127 (96.06%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MSRILKIKVKAHGIKALAQEKQETNLREWEELHSKADEVALSVEKDKEKEKEKGDQEIAE 60
           MS ILKIKVKAHGIKALAQEKQETNLREWEELHSK DEVALSVEKDKEKEKEKGDQEIAE
Sbjct: 1   MSGILKIKVKAHGIKALAQEKQETNLREWEELHSKDDEVALSVEKDKEKEKEKGDQEIAE 60

Query: 61  ELEKEIGQMSSLEEEAPRRQKRISKVSKKFLHAQVEMRRKAKDKEALQKDDEEEDGESAS 120
           ELEKEIG MSSLEEEAPRRQKRISKVSK FLHAQVEMRRKAKDKEALQKDDEEED ESAS
Sbjct: 61  ELEKEIGHMSSLEEEAPRRQKRISKVSKNFLHAQVEMRRKAKDKEALQKDDEEEDEESAS 120

Query: 121 EESLSAS 128
           EESLSAS
Sbjct: 121 EESLSAS 127

[Close]

BLAST of CSPI02G09320.1 vs. ExPASy TrEMBL
Match: A0A5A7T8V8 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001560 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.9e-10
Identity = 47/91 (51.65%), Postives = 65/91 (71.43%), Query Frame = 0


Query: 2   SRILKIKVKAHGIKALAQEKQETNLREWEELHSKADEVALSVEKDKEKEKEKGDQEIAEE 61
           SR+LKIK +  G+KAL +EK +  ++ W+EL SK +EVA SVEK KEK KEK  +E  EE
Sbjct: 31  SRVLKIKEQTQGVKALVEEKLKAKMKGWKELRSKVEEVAFSVEKSKEKGKEKTFEEFCEE 90

Query: 62  LEKEIGQMSSLEEEAPR-RQKRISKVSKKFL 92
             KEI ++SSL+++A + R+KR  K+ KK L
Sbjct: 91  ASKEIKELSSLKDDALKLRKKRRVKMKKKTL 121

[Close]

BLAST of CSPI02G09320.1 vs. ExPASy TrEMBL
Match: A0A5A7V3R4 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001710 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.6e-09
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 4   ILKIKVKAHGIKALAQEKQETNLREWEELHSKADEVALSVEKDKEKEKEKGDQEIAEELE 63
           +LKIKVKA GIKAL +EK+E  LRE EEL +K D+VALSVEK KE   EK  +E  EE +
Sbjct: 44  LLKIKVKAQGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKE---EKTFEEHCEEFK 103

Query: 64  KEIGQMSSLEEEAPRRQKRISKVSKKFLHAQVEMRRKAKDKEALQKDDEEE 115
           KEI ++S LE+E   +    S   K+ +  Q + R++ K+K+A Q+++ +E
Sbjct: 104 KEIEELSPLEDEVVEK----SSKKKRIMEGQDDKRKEKKEKKAQQEEESQE 147

[Close]

BLAST of CSPI02G09320.1 vs. ExPASy TrEMBL
Match: A0A5D3BSI2 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00310 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.6e-09
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 4   ILKIKVKAHGIKALAQEKQETNLREWEELHSKADEVALSVEKDKEKEKEKGDQEIAEELE 63
           +LKIKVKA GIKAL +EK+E  LRE EEL +K D+VALSVEK KE   EK  +E  EE +
Sbjct: 44  LLKIKVKAQGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKE---EKTFEEHCEEFK 103

Query: 64  KEIGQMSSLEEEAPRRQKRISKVSKKFLHAQVEMRRKAKDKEALQKDDEEE 115
           KEI ++S LE+E   +    S   K+ +  Q + R++ K+K+A Q+++ +E
Sbjct: 104 KEIEELSPLEDEVVEK----SSKKKRIMEGQDDKRKEKKEKKAQQEEESQE 147

[Close]

BLAST of CSPI02G09320.1 vs. ExPASy TrEMBL
Match: A0A1S3CPC6 (protein MNN4-like OS=Cucumis melo OX=3656 GN=LOC103503068 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.6e-09
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 4   ILKIKVKAHGIKALAQEKQETNLREWEELHSKADEVALSVEKDKEKEKEKGDQEIAEELE 63
           +LKIKVKA GIKAL +EK+E  LRE EEL +K D+VALSVEK KE   EK  +E  EE +
Sbjct: 44  LLKIKVKAQGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKE---EKTFEEHCEEFK 103

Query: 64  KEIGQMSSLEEEAPRRQKRISKVSKKFLHAQVEMRRKAKDKEALQKDDEEE 115
           KEI ++S LE+E   +    S   K+ +  Q + R++ K+K+A Q+++ +E
Sbjct: 104 KEIEELSPLEDEVVEK----SSKKKRIMEGQDDKRKEKKEKKAQQEEESQE 147

[Close]

BLAST of CSPI02G09320.1 vs. NCBI nr
Match: KGN61491.1 (hypothetical protein Csa_006545 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 1.8e-49
Identity = 122/127 (96.06%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MSRILKIKVKAHGIKALAQEKQETNLREWEELHSKADEVALSVEKDKEKEKEKGDQEIAE 60
           MS ILKIKVKAHGIKALAQEKQETNLREWEELHSK DEVALSVEKDKEKEKEKGDQEIAE
Sbjct: 1   MSGILKIKVKAHGIKALAQEKQETNLREWEELHSKDDEVALSVEKDKEKEKEKGDQEIAE 60

Query: 61  ELEKEIGQMSSLEEEAPRRQKRISKVSKKFLHAQVEMRRKAKDKEALQKDDEEEDGESAS 120
           ELEKEIG MSSLEEEAPRRQKRISKVSK FLHAQVEMRRKAKDKEALQKDDEEED ESAS
Sbjct: 61  ELEKEIGHMSSLEEEAPRRQKRISKVSKNFLHAQVEMRRKAKDKEALQKDDEEEDEESAS 120

Query: 121 EESLSAS 128
           EESLSAS
Sbjct: 121 EESLSAS 127

[Close]

BLAST of CSPI02G09320.1 vs. NCBI nr
Match: KAA0038037.1 (protein MNN4-like [Cucumis melo var. makuwa] >TYK20565.1 protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-09
Identity = 47/91 (51.65%), Postives = 65/91 (71.43%), Query Frame = 0


Query: 2   SRILKIKVKAHGIKALAQEKQETNLREWEELHSKADEVALSVEKDKEKEKEKGDQEIAEE 61
           SR+LKIK +  G+KAL +EK +  ++ W+EL SK +EVA SVEK KEK KEK  +E  EE
Sbjct: 31  SRVLKIKEQTQGVKALVEEKLKAKMKGWKELRSKVEEVAFSVEKSKEKGKEKTFEEFCEE 90

Query: 62  LEKEIGQMSSLEEEAPR-RQKRISKVSKKFL 92
             KEI ++SSL+++A + R+KR  K+ KK L
Sbjct: 91  ASKEIKELSSLKDDALKLRKKRRVKMKKKTL 121

[Close]

BLAST of CSPI02G09320.1 vs. NCBI nr
Match: TYK01186.1 (protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 5.4e-09
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 4   ILKIKVKAHGIKALAQEKQETNLREWEELHSKADEVALSVEKDKEKEKEKGDQEIAEELE 63
           +LKIKVKA GIKAL +EK+E  LRE EEL +K D+VALSVEK KE   EK  +E  EE +
Sbjct: 44  LLKIKVKAQGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKE---EKTFEEHCEEFK 103

Query: 64  KEIGQMSSLEEEAPRRQKRISKVSKKFLHAQVEMRRKAKDKEALQKDDEEE 115
           KEI ++S LE+E   +    S   K+ +  Q + R++ K+K+A Q+++ +E
Sbjct: 104 KEIEELSPLEDEVVEK----SSKKKRIMEGQDDKRKEKKEKKAQQEEESQE 147

[Close]

BLAST of CSPI02G09320.1 vs. NCBI nr
Match: XP_008465464.1 (PREDICTED: protein MNN4-like [Cucumis melo] >KAA0062653.1 protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 5.4e-09
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 4   ILKIKVKAHGIKALAQEKQETNLREWEELHSKADEVALSVEKDKEKEKEKGDQEIAEELE 63
           +LKIKVKA GIKAL +EK+E  LRE EEL +K D+VALSVEK KE   EK  +E  EE +
Sbjct: 44  LLKIKVKAQGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKE---EKTFEEHCEEFK 103

Query: 64  KEIGQMSSLEEEAPRRQKRISKVSKKFLHAQVEMRRKAKDKEALQKDDEEE 115
           KEI ++S LE+E   +    S   K+ +  Q + R++ K+K+A Q+++ +E
Sbjct: 104 KEIEELSPLEDEVVEK----SSKKKRIMEGQDDKRKEKKEKKAQQEEESQE 147

[Close]

BLAST of CSPI02G09320.1 vs. NCBI nr
Match: KAA0041276.1 (protein MNN4-like [Cucumis melo var. makuwa] >TYK16072.1 protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 6.0e-08
Identity = 60/126 (47.62%), Postives = 77/126 (61.11%), Query Frame = 0


Query: 2   SRILKIKVKAHGIKALAQEKQETNLREWEELHSKADEVALSVEKDKEKEKEKGDQEIAEE 61
           +R+LKIKVKA    ALA+ K+E  LR+ EEL +K D++ALSVEK KEKEK    +E  +E
Sbjct: 22  ARLLKIKVKAQRAMALAEGKKEIKLRQPEELLNKVDKLALSVEKGKEKEKT--FEEFYKE 81

Query: 62  LEKEIGQMSSLEEEAPRR--QKRISKVSKKFLHAQVEMRRKAKDKEALQKDDEEEDGESA 121
            EKEI + S LE+    R  +KR   + KK L  Q   RRK K +   QK+ E+E   S 
Sbjct: 82  FEKEIDEFSPLEDNVVERPAKKRNVTMKKKVLRDQFAKRRKEKKRRGPQKESEKEVERSE 141

Query: 122 SEESLS 126
            E SLS
Sbjct: 142 KEGSLS 145

The following BLAST results are available for this feature:

BLAST of CSPI02G09320.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G09320.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNF9	8.9e-50	96.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G145900 PE=4 SV=1	[more]
A0A5A7T8V8	6.9e-10	51.65	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00...	[more]
A0A5A7V3R4	2.6e-09	47.75	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001...	[more]
A0A5D3BSI2	2.6e-09	47.75	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G0...	[more]
A0A1S3CPC6	2.6e-09	47.75	protein MNN4-like OS=Cucumis melo OX=3656 GN=LOC103503068 PE=4 SV=1	[more]

BLAST of CSPI02G09320.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61491.1	1.8e-49	96.06	hypothetical protein Csa_006545 [Cucumis sativus]	[more]
KAA0038037.1	1.4e-09	51.65	protein MNN4-like [Cucumis melo var. makuwa] >TYK20565.1 protein MNN4-like [Cucu...	[more]
TYK01186.1	5.4e-09	47.75	protein MNN4-like [Cucumis melo var. makuwa]	[more]
XP_008465464.1	5.4e-09	47.75	PREDICTED: protein MNN4-like [Cucumis melo] >KAA0062653.1 protein MNN4-like [Cuc...	[more]
KAA0041276.1	6.0e-08	47.62	protein MNN4-like [Cucumis melo var. makuwa] >TYK16072.1 protein MNN4-like [Cucu...	[more]

BLAST of CSPI02G09320.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 45..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..81

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G09320	CSPI02G09320	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G09320.1.cds1	CSPI02G09320.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G09320.1	CSPI02G09320.1-protein	polypeptide