CSPI02G05730.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI02G05730.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr2: 4191792 .. 4192613 (-)
Sequence length753
RNA-Seq ExpressionCSPI02G05730.1
SyntenyCSPI02G05730.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGCAGAGGCTCAATACATCCCTGAAAAAGAAGAAGCAAGCAGAGACTGAAAATTGAAAAGAGAAGTGAAAAATGAAAAAAAATGGGGAATTGAAGATGATAGAAACCTGCGTTGTTGTGAGGATTATGAATTGAATGAGGAATCTAGGGAAAGAAGTGGGGTTGTAAAGAAGAGTCAGAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGGGTGGCGATGTGCTCCAATTGGTATCGCCAATTCAGAGAAATGGAGTTGGAAATTTTGGGTAACAGAAAAGTAAATTGTTAGATGGCGGTGTTGCTCCCGCTACGGTGCGTTCAATCCACGTCACTTCCG

mRNA sequence

ACGCAGAGGCTCAATACATCCCTGAAAAAGAAGAAGCAAGCAGAGACTGAAAATTGAAAAGAGAAGTGAAAAATGAAAAAAAATGGGGAATTGAAGATGATAGAAACCTGCGTTGTTAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGGGTGGCGATGTGCTCCAATTGGTATCGCCAATTCAGAGAAATGGAGTTGGAAATTTTGGGTAACAGAAAAGTAAATTGTTAGATGGCGGTGTTGCTCCCGCTACGGTGCGTTCAATCCACGTCACTTCCG

Coding sequence (CDS)

ATGAAAAAAAATGGGGAATTGAAGATGATAGAAACCTGCGTTGTTAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGGGTGGCGATGTGCTCCAATTGGTATCGCCAATTCAGAGAAATGGAGTTGGAAATTTTGGGTAACAGAAAAGTAAATTGTTAG

Protein sequence

MKKNGELKMIETCVVKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKWVAMCSNWYRQFREMELEILGNRKVNC*
Homology
The following BLAST results are available for this feature:
BLAST of CSPI02G05730.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI02G05730.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI02G05730.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI02G05730.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..186
IPR005819Linker histone H1/H5PRINTSPR00624HISTONEH5coord: 68..87
score: 39.44
coord: 16..30
score: 37.78
coord: 46..63
score: 41.98

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI02G05730CSPI02G05730gene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G05730.1.utr3p1CSPI02G05730.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G05730.1.cds2CSPI02G05730.1.cds2CDS
CSPI02G05730.1.cds1CSPI02G05730.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G05730.1.utr5p1CSPI02G05730.1.utr5p1five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI02G05730.1CSPI02G05730.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006334 nucleosome assembly
cellular_component GO:0000786 nucleosome
molecular_function GO:0003677 DNA binding