CSPI02G05570.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI02G05570.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RING-H2 finger protein ATL56
Location	Chr2: 4062211 .. 4063399 (+)
Sequence length	1189
RNA-Seq Expression	CSPI02G05570.1
Synteny	CSPI02G05570.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAAAAGCATTGTAATTCCTAAGTATCATAAGACCAAAAGAAATGGCCCTACCTCCCCACAAGCCTTCGGAAAAAATCAAAACCCACACGCCCACGGTTTCCATTTCTATACTCTTTTTCCTCGAACTCATACATCATTCAACCATATCCCCAATCCCCCAATTTCCTTCAAAATTCCACTCATCCCTCGCCGCCCAACAACCCCCAAATGCCCTTTCAACCTTCTGCCGCCGTGAGCGGCCACCCACTTCCCCACCCTCCGCCACCGCCTAAGCCAGAGACTCAACTCCTTTCTCTGCTTCTCAAAATCGCCATCATGATTCTCTTAACCACTCTCTTCTTCGTCTTCCTCGGCCTCGCCACTGCCCTTCTCCTTATCCACCTCTGCGTCGCTAGTGCCCTCCATCGCCGTCGCCGATTCCACAGTCGCCGTTCCCAATACTCCGATTCCTCATCTGGGTTCTCCCATCGTGACCTCAAAAAGCTTCTCCAATTCCGATTCTCCAATTGGGTCAATCCCCATTCTCAAATTGACTGCTCTATTTGTCTTGATGGCTTTAGAAAAGGTCAGTGGTGTAGGAGACTTGGTGGGTGTGGGCATGTTTATCATCGCAAGTGTATTGATTCGTGGTTAGTTAGGGTTTCTGCTTGTCCTCTATGCCGACGATGTGTTCGATTGGATATGGAAGAACATGAAATTGATTGTGTAAGTTCTCGGAACTTTGAGCTTTTTTATGCTCTGTAACTGCCTTTAACTTTAGTTTAGTTTCTTCTTTCTTTTTTGATTACGTTCTCTTTTAGATGTATATAAAGTCGAATCAATGTTATTCGATGAAGGTTTCTTTTGGTAATGTTTTGATTTTGTGTCTCTGTTTTTCTCTGTTCCTATGATTATCATGTTCTTGGTTTTTGTTTTTTTCTTCATTACTTCCCCTAATCTCTTGTTTTGAGGTTATAATGATTGGATTATGTTCTTTACTTGTGAGGTGAGATTTTTGCTTGGGGTTTCTTTGATTGGGAAATGGAGATTTTAGGGAATTTCATTATCTTAGGTTTAATGGTAGGATAGAAGGAGAAGAGGGGTCTTAAAGTTCATAGGTATAGAGAGAAATGAATATATCTCAATTGGTTATGTTATGTATTCGAGGTTACAAGTTCAAATCCTGGAGGACTCTTTGTTAAAGTCAA

mRNA sequence

GTGAAAAGCATTGTAATTCCTAAGTATCATAAGACCAAAAGAAATGGCCCTACCTCCCCACAAGCCTTCGGAAAAAATCAAAACCCACACGCCCACGGTTTCCATTTCTATACTCTTTTTCCTCGAACTCATACATCATTCAACCATATCCCCAATCCCCCAATTTCCTTCAAAATTCCACTCATCCCTCGCCGCCCAACAACCCCCAAATGCCCTTTCAACCTTCTGCCGCCGTGAGCGGCCACCCACTTCCCCACCCTCCGCCACCGCCTAAGCCAGAGACTCAACTCCTTTCTCTGCTTCTCAAAATCGCCATCATGATTCTCTTAACCACTCTCTTCTTCGTCTTCCTCGGCCTCGCCACTGCCCTTCTCCTTATCCACCTCTGCGTCGCTAGTGCCCTCCATCGCCGTCGCCGATTCCACAGTCGCCGTTCCCAATACTCCGATTCCTCATCTGGGTTCTCCCATCGTGACCTCAAAAAGCTTCTCCAATTCCGATTCTCCAATTGGGTCAATCCCCATTCTCAAATTGACTGCTCTATTTGTCTTGATGGCTTTAGAAAAGGTCAGTGGTGTAGGAGACTTGGTGGGTGTGGGCATGTTTATCATCGCAAGTGTATTGATTCGTGGTTAGTTAGGGTTTCTGCTTGTCCTCTATGCCGACGATGTGTTCGATTGGATATGGAAGAACATGAAATTGATTGTGTAAGTTCTCGGAACTTTGAGCTTTTTTATGCTCTGTAACTGCCTTTAACTTTAGTTTAGTTTCTTCTTTCTTTTTTGATTACGTTCTCTTTTAGATGTATATAAAGTCGAATCAATGTTATTCGATGAAGGTTTCTTTTGGTAATGTTTTGATTTTGTGTCTCTGTTTTTCTCTGTTCCTATGATTATCATGTTCTTGGTTTTTGTTTTTTTCTTCATTACTTCCCCTAATCTCTTGTTTTGAGGTTATAATGATTGGATTATGTTCTTTACTTGTGAGGTGAGATTTTTGCTTGGGGTTTCTTTGATTGGGAAATGGAGATTTTAGGGAATTTCATTATCTTAGGTTTAATGGTAGGATAGAAGGAGAAGAGGGGTCTTAAAGTTCATAGGTATAGAGAGAAATGAATATATCTCAATTGGTTATGTTATGTATTCGAGGTTACAAGTTCAAATCCTGGAGGACTCTTTGTTAAAGTCAA

Coding sequence (CDS)

ATGCCCTTTCAACCTTCTGCCGCCGTGAGCGGCCACCCACTTCCCCACCCTCCGCCACCGCCTAAGCCAGAGACTCAACTCCTTTCTCTGCTTCTCAAAATCGCCATCATGATTCTCTTAACCACTCTCTTCTTCGTCTTCCTCGGCCTCGCCACTGCCCTTCTCCTTATCCACCTCTGCGTCGCTAGTGCCCTCCATCGCCGTCGCCGATTCCACAGTCGCCGTTCCCAATACTCCGATTCCTCATCTGGGTTCTCCCATCGTGACCTCAAAAAGCTTCTCCAATTCCGATTCTCCAATTGGGTCAATCCCCATTCTCAAATTGACTGCTCTATTTGTCTTGATGGCTTTAGAAAAGGTCAGTGGTGTAGGAGACTTGGTGGGTGTGGGCATGTTTATCATCGCAAGTGTATTGATTCGTGGTTAGTTAGGGTTTCTGCTTGTCCTCTATGCCGACGATGTGTTCGATTGGATATGGAAGAACATGAAATTGATTGTGTAAGTTCTCGGAACTTTGAGCTTTTTTATGCTCTGTAA

Protein sequence

MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLCVASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL*

Homology

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BLAST of CSPI02G05570.1 vs. ExPASy Swiss-Prot
Match: Q9ZV51 (RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.3e-31
Identity = 80/170 (47.06%), Postives = 107/170 (62.94%), Query Frame = 0


Query: 1   MPFQPSAAVSGHPLPHPP--PPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIH 60
           MP   +  +SG P    P  PPPKP+T++LSL L   IM  +  LF V +G+A+ L+L  
Sbjct: 1   MPPTNNYRISGEPPSTTPSHPPPKPKTRILSLFLVGVIMFSIFFLFLVLIGIASVLILPL 60

Query: 61  LCVASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSN-WVNPHSQIDCSICLDGF 120
           L  +   H RRR   RR++  +SS G S R +KKL QF+FS        + DC +C DGF
Sbjct: 61  LLSSLHRHHRRR---RRNRRQESSDGLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGF 120

Query: 121 RKGQWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRL---DMEEHEI 165
           R+GQWCR L GCGHV+HRKC+D+WL++ S CP+CR  VRL   D +E E+
Sbjct: 121 RQGQWCRNLPGCGHVFHRKCVDTWLLKASTCPICRARVRLWEEDPQEGEL 167

[Close]

BLAST of CSPI02G05570.1 vs. ExPASy Swiss-Prot
Match: Q9M0C3 (RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.1e-22
Identity = 60/151 (39.74%), Postives = 85/151 (56.29%), Query Frame = 0


Query: 8   AVSGHPLPHPPPP----PKPETQLLS--LLLKIAIMILLTTLFFVFLGLATALLLIHLCV 67
           ++S  P P PPPP        T++LS  L+  I I + +T   F+   L           
Sbjct: 10  SISREPSPSPPPPKANTKNLPTKILSNFLIGLIMIPVAITAFIFILTSLGFTFFFAFYWF 69

Query: 68  ASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQ 127
               +R R    RR +YSD   G S R +K+L QF++    + +   DC +C+DGFR+GQ
Sbjct: 70  LQRNYRHRLRRHRRHEYSD---GLSPRCVKRLPQFKYCEPSSEYGGDDCVVCIDGFRQGQ 129

Query: 128 WCRRLGGCGHVYHRKCIDSWLVRVSACPLCR 153
           WCR+L  CGHV+HRKC+D WL++VS CP+CR
Sbjct: 130 WCRKLPRCGHVFHRKCVDLWLIKVSTCPICR 157

[Close]

BLAST of CSPI02G05570.1 vs. ExPASy Swiss-Prot
Match: Q5EAE9 (RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-07
Identity = 54/174 (31.03%), Postives = 79/174 (45.40%), Query Frame = 0


Query: 10  SGHPLPHPPPPPKPETQLLSLLLK-IAIMILLTTLFFVFLGLATALLLIHLCVASALHRR 69
           S  P P PPP P P     S L+  IA++I + T FF      T LLL+++      H +
Sbjct: 33  SDTPPPLPPPSPPPRHNFTSSLMPGIAVVIAVLTAFFSL----TFLLLLYV-----KHCK 92

Query: 70  RR------FHSRR---SQYSD------------SSSGFSHRDLKKLLQFRFSNWVNPHSQ 129
           RR       H +R   ++Y               +SG     ++ L  FRF         
Sbjct: 93  RRNGSVYVNHPQRFAITRYGGGYYNGGGVVGGRKNSGIDRSVIESLPVFRFGALSGHKDG 152

Query: 130 IDCSICLDGFRKGQWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEE 162
           ++C++CL  F   +  R L  C H +H +C+D+WL   S CPLCR   R+D E+
Sbjct: 153 LECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCR--YRVDPED 195

[Close]

BLAST of CSPI02G05570.1 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.7e-07
Identity = 45/159 (28.30%), Postives = 65/159 (40.88%), Query Frame = 0


Query: 17  PPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLCVASALH---------- 76
           PPPPP P  + LSLLL  +I ++ + + F+FL     L +      SA            
Sbjct: 27  PPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRISAASVTPGDTNQQE 86

Query: 77  -----RRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQ 136
                  R F      +   + G     +  +    F          +CS+CL+ F + +
Sbjct: 87  DEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFEEDE 146

Query: 137 WCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDME 161
             R L  C H +H  CID+WL+    CPLCR  V L  E
Sbjct: 147 SLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITE 185

[Close]

BLAST of CSPI02G05570.1 vs. ExPASy Swiss-Prot
Match: Q9SJJ7 (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.3e-06
Identity = 49/157 (31.21%), Postives = 72/157 (45.86%), Query Frame = 0


Query: 9   VSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFV------FLGLATALLLIHLCVA 68
           V+  PL  P PPP+P + L S  + + I ILL  LFF+      F   A +        +
Sbjct: 29  VTSSPLT-PTPPPQPPSALDS-TMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDISS 88

Query: 69  SALHRRRRFHSRRSQYSDSSS-------GFSHRDLKKLLQFRFSNWVNPHSQIDCSICLD 128
               R  R   RR   S   S       G   + ++ L  +R++      ++ DC ICL 
Sbjct: 89  MPRTRSSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAKQRNE-DCVICLS 148

Query: 129 GFRKGQWCRRLGGCGHVYHRKCIDSWLVRVSACPLCR 153
            F +G+  + +  CGHV+H  C+D+WL     CPLCR
Sbjct: 149 DFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCR 182

[Close]

BLAST of CSPI02G05570.1 vs. ExPASy TrEMBL
Match: A0A0A0LJ61 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G047820 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.0e-96
Identity = 177/178 (99.44%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60
           MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC
Sbjct: 56  MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 115

Query: 61  VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120
           VASALHRRRRFHSR SQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG
Sbjct: 116 VASALHRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 175

Query: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 179
           QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL
Sbjct: 176 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 233

[Close]

BLAST of CSPI02G05570.1 vs. ExPASy TrEMBL
Match: A0A5D3CFV1 (RING-H2 finger protein ATL56 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00160 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.4e-95
Identity = 176/178 (98.88%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 1   MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60
           MPFQ SAAVSG PLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC
Sbjct: 1   MPFQHSAAVSGDPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60

Query: 61  VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120
           VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG
Sbjct: 61  VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120

Query: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 179
           QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL
Sbjct: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 178

[Close]

BLAST of CSPI02G05570.1 vs. ExPASy TrEMBL
Match: A0A1S3BTK8 (RING-H2 finger protein ATL56 OS=Cucumis melo OX=3656 GN=LOC103493368 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.4e-95
Identity = 176/178 (98.88%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 1   MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60
           MPFQ SAAVSG PLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC
Sbjct: 1   MPFQHSAAVSGDPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60

Query: 61  VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120
           VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG
Sbjct: 61  VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120

Query: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 179
           QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL
Sbjct: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 178

[Close]

BLAST of CSPI02G05570.1 vs. ExPASy TrEMBL
Match: A0A6J1K548 (RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111492378 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.7e-78
Identity = 147/178 (82.58%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 1   MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60
           MP Q SAA SG+PLPHPPPPPKPE +LLSLLLK+ +MI  TTLFFVFLGLATALLL HLC
Sbjct: 1   MPLQDSAAGSGYPLPHPPPPPKPEAKLLSLLLKVTVMIFFTTLFFVFLGLATALLLFHLC 60

Query: 61  VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120
           +ASALHR      RR+QY DSSSGFS RDLKKLLQF+FSN VNPHSQIDCSICLDGFRKG
Sbjct: 61  IASALHR------RRAQYPDSSSGFSRRDLKKLLQFQFSNGVNPHSQIDCSICLDGFRKG 120

Query: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 179
           QWCR+LGGCGHVYHRKCIDSWLVRVS CPLCRRCVRLDMEEH+I+CVS RN+E+FYAL
Sbjct: 121 QWCRKLGGCGHVYHRKCIDSWLVRVSTCPLCRRCVRLDMEEHKINCVSPRNYEIFYAL 172

[Close]

BLAST of CSPI02G05570.1 vs. ExPASy TrEMBL
Match: A0A6J1ENH8 (RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111436213 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 8.3e-78
Identity = 146/178 (82.02%), Postives = 158/178 (88.76%), Query Frame = 0


Query: 1   MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60
           MP Q SAA SG PLPHPPPPPKPE +LLSLLLK+A+MI  TTLFF+FLGLATALLL HLC
Sbjct: 1   MPLQDSAAGSGDPLPHPPPPPKPEAKLLSLLLKVAVMIFFTTLFFIFLGLATALLLFHLC 60

Query: 61  VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120
           +ASALHR      RR+QY DSSSGFS RDLKKLLQF+FSN VNPHSQIDCSICLDGFRKG
Sbjct: 61  IASALHR------RRAQYPDSSSGFSRRDLKKLLQFQFSNGVNPHSQIDCSICLDGFRKG 120

Query: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 179
           QWCR+LGGCGHVYHRKCIDSWLVRVS CPLCRRCVRLDMEEH+I+CVS RN+E+ YAL
Sbjct: 121 QWCRKLGGCGHVYHRKCIDSWLVRVSTCPLCRRCVRLDMEEHKINCVSPRNYEILYAL 172

[Close]

BLAST of CSPI02G05570.1 vs. NCBI nr
Match: XP_004149098.1 (RING-H2 finger protein ATL56 [Cucumis sativus])

HSP 1 Score: 362.5 bits (929), Expect = 2.2e-96
Identity = 177/178 (99.44%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60
           MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC
Sbjct: 1   MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60

Query: 61  VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120
           VASALHRRRRFHSR SQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG
Sbjct: 61  VASALHRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120

Query: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 179
           QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL
Sbjct: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 178

[Close]

BLAST of CSPI02G05570.1 vs. NCBI nr
Match: XP_008452306.1 (PREDICTED: RING-H2 finger protein ATL56 [Cucumis melo] >KAA0048646.1 RING-H2 finger protein ATL56 [Cucumis melo var. makuwa] >TYK10847.1 RING-H2 finger protein ATL56 [Cucumis melo var. makuwa])

HSP 1 Score: 357.5 bits (916), Expect = 6.9e-95
Identity = 176/178 (98.88%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 1   MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60
           MPFQ SAAVSG PLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC
Sbjct: 1   MPFQHSAAVSGDPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60

Query: 61  VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120
           VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG
Sbjct: 61  VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120

Query: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 179
           QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL
Sbjct: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 178

[Close]

BLAST of CSPI02G05570.1 vs. NCBI nr
Match: XP_038889631.1 (RING-H2 finger protein ATL56-like [Benincasa hispida])

HSP 1 Score: 336.3 bits (861), Expect = 1.7e-88
Identity = 165/178 (92.70%), Postives = 170/178 (95.51%), Query Frame = 0


Query: 1   MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60
           MPFQ SAAVSG PLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC
Sbjct: 1   MPFQDSAAVSGDPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60

Query: 61  VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120
           VASALHR RRFH RR+Q+SDSS+GFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG
Sbjct: 61  VASALHRHRRFHRRRAQFSDSSTGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120

Query: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 179
           QWCR+LGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLD EE EIDCVSS N+EL YAL
Sbjct: 121 QWCRKLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDKEELEIDCVSSPNYELLYAL 178

[Close]

BLAST of CSPI02G05570.1 vs. NCBI nr
Match: XP_022997472.1 (RING-H2 finger protein ATL56-like [Cucurbita maxima])

HSP 1 Score: 302.0 bits (772), Expect = 3.5e-78
Identity = 147/178 (82.58%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 1   MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60
           MP Q SAA SG+PLPHPPPPPKPE +LLSLLLK+ +MI  TTLFFVFLGLATALLL HLC
Sbjct: 1   MPLQDSAAGSGYPLPHPPPPPKPEAKLLSLLLKVTVMIFFTTLFFVFLGLATALLLFHLC 60

Query: 61  VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120
           +ASALHR      RR+QY DSSSGFS RDLKKLLQF+FSN VNPHSQIDCSICLDGFRKG
Sbjct: 61  IASALHR------RRAQYPDSSSGFSRRDLKKLLQFQFSNGVNPHSQIDCSICLDGFRKG 120

Query: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 179
           QWCR+LGGCGHVYHRKCIDSWLVRVS CPLCRRCVRLDMEEH+I+CVS RN+E+FYAL
Sbjct: 121 QWCRKLGGCGHVYHRKCIDSWLVRVSTCPLCRRCVRLDMEEHKINCVSPRNYEIFYAL 172

[Close]

BLAST of CSPI02G05570.1 vs. NCBI nr
Match: XP_022929717.1 (RING-H2 finger protein ATL56-like [Cucurbita moschata])

HSP 1 Score: 299.7 bits (766), Expect = 1.7e-77
Identity = 146/178 (82.02%), Postives = 158/178 (88.76%), Query Frame = 0


Query: 1   MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60
           MP Q SAA SG PLPHPPPPPKPE +LLSLLLK+A+MI  TTLFF+FLGLATALLL HLC
Sbjct: 1   MPLQDSAAGSGDPLPHPPPPPKPEAKLLSLLLKVAVMIFFTTLFFIFLGLATALLLFHLC 60

Query: 61  VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120
           +ASALHR      RR+QY DSSSGFS RDLKKLLQF+FSN VNPHSQIDCSICLDGFRKG
Sbjct: 61  IASALHR------RRAQYPDSSSGFSRRDLKKLLQFQFSNGVNPHSQIDCSICLDGFRKG 120

Query: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 179
           QWCR+LGGCGHVYHRKCIDSWLVRVS CPLCRRCVRLDMEEH+I+CVS RN+E+ YAL
Sbjct: 121 QWCRKLGGCGHVYHRKCIDSWLVRVSTCPLCRRCVRLDMEEHKINCVSPRNYEILYAL 172

[Close]

BLAST of CSPI02G05570.1 vs. TAIR 10
Match: AT2G18670.1 (RING/U-box superfamily protein )

HSP 1 Score: 136.0 bits (341), Expect = 3.1e-32
Identity = 80/170 (47.06%), Postives = 107/170 (62.94%), Query Frame = 0


Query: 1   MPFQPSAAVSGHPLPHPP--PPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIH 60
           MP   +  +SG P    P  PPPKP+T++LSL L   IM  +  LF V +G+A+ L+L  
Sbjct: 1   MPPTNNYRISGEPPSTTPSHPPPKPKTRILSLFLVGVIMFSIFFLFLVLIGIASVLILPL 60

Query: 61  LCVASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSN-WVNPHSQIDCSICLDGF 120
           L  +   H RRR   RR++  +SS G S R +KKL QF+FS        + DC +C DGF
Sbjct: 61  LLSSLHRHHRRR---RRNRRQESSDGLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGF 120

Query: 121 RKGQWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRL---DMEEHEI 165
           R+GQWCR L GCGHV+HRKC+D+WL++ S CP+CR  VRL   D +E E+
Sbjct: 121 RQGQWCRNLPGCGHVFHRKCVDTWLLKASTCPICRARVRLWEEDPQEGEL 167

[Close]

BLAST of CSPI02G05570.1 vs. TAIR 10
Match: AT4G30370.1 (RING/U-box superfamily protein )

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-23
Identity = 60/151 (39.74%), Postives = 85/151 (56.29%), Query Frame = 0


Query: 8   AVSGHPLPHPPPP----PKPETQLLS--LLLKIAIMILLTTLFFVFLGLATALLLIHLCV 67
           ++S  P P PPPP        T++LS  L+  I I + +T   F+   L           
Sbjct: 10  SISREPSPSPPPPKANTKNLPTKILSNFLIGLIMIPVAITAFIFILTSLGFTFFFAFYWF 69

Query: 68  ASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQ 127
               +R R    RR +YSD   G S R +K+L QF++    + +   DC +C+DGFR+GQ
Sbjct: 70  LQRNYRHRLRRHRRHEYSD---GLSPRCVKRLPQFKYCEPSSEYGGDDCVVCIDGFRQGQ 129

Query: 128 WCRRLGGCGHVYHRKCIDSWLVRVSACPLCR 153
           WCR+L  CGHV+HRKC+D WL++VS CP+CR
Sbjct: 130 WCRKLPRCGHVFHRKCVDLWLIKVSTCPICR 157

[Close]

BLAST of CSPI02G05570.1 vs. TAIR 10
Match: AT3G20395.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-10
Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 98  FSNWVNPHSQIDCSICLDGFRKGQWCRRLGGCGHVYHRKCIDSWLVRVSACPLCR 153
           F N     ++  CSICL  + +G+  R+L  CGH +H  CID WL+R   CP+CR
Sbjct: 159 FYNRSEHQTKSSCSICLQDWEEGEVGRKLARCGHTFHMNCIDEWLLRQETCPICR 213

[Close]

BLAST of CSPI02G05570.1 vs. TAIR 10
Match: AT1G74410.1 (RING/U-box superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 7.3e-10
Identity = 28/87 (32.18%), Postives = 45/87 (51.72%), Query Frame = 0


Query: 71  FHSRRSQYSD-SSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQWCRRLGGC 130
           +  R   Y +  + G S   L+KL  +  S+ +       C+ICL   + G+  R L  C
Sbjct: 136 YEEREDVYGELEARGLSGDSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTGEITRSLPKC 195

Query: 131 GHVYHRKCIDSWLVRVSACPLCRRCVR 157
            H +H  C+D WL+R  +CP+CR+ V+
Sbjct: 196 DHTFHLVCVDKWLIRHGSCPICRQAVK 222

[Close]

BLAST of CSPI02G05570.1 vs. TAIR 10
Match: AT5G66070.1 (RING/U-box superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 9.6e-10
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 82  SSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQWCRRLGGCGHVYHRKCIDSW 141
           S G +   L ++ + R ++  +P   + CS+CL  F+ G+  R L  C H++H  CID W
Sbjct: 150 SKGLTGDSLNRIPKVRITD-TSPEI-VSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKW 209

Query: 142 LVRVSACPLCRR 154
           L R ++CPLCRR
Sbjct: 210 LRRHASCPLCRR 219

The following BLAST results are available for this feature:

BLAST of CSPI02G05570.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZV51	4.3e-31	47.06	RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1	[more]
Q9M0C3	2.1e-22	39.74	RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1	[more]
Q5EAE9	1.5e-07	31.03	RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2	[more]
Q9LX93	5.7e-07	28.30	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q9SJJ7	1.3e-06	31.21	RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1	[more]

BLAST of CSPI02G05570.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ61	1.0e-96	99.44	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G047820 P...	[more]
A0A5D3CFV1	3.4e-95	98.88	RING-H2 finger protein ATL56 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BTK8	3.4e-95	98.88	RING-H2 finger protein ATL56 OS=Cucumis melo OX=3656 GN=LOC103493368 PE=4 SV=1	[more]
A0A6J1K548	1.7e-78	82.58	RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111492378 PE...	[more]
A0A6J1ENH8	8.3e-78	82.02	RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111436213 ...	[more]

BLAST of CSPI02G05570.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149098.1	2.2e-96	99.44	RING-H2 finger protein ATL56 [Cucumis sativus]	[more]
XP_008452306.1	6.9e-95	98.88	PREDICTED: RING-H2 finger protein ATL56 [Cucumis melo] >KAA0048646.1 RING-H2 fin...	[more]
XP_038889631.1	1.7e-88	92.70	RING-H2 finger protein ATL56-like [Benincasa hispida]	[more]
XP_022997472.1	3.5e-78	82.58	RING-H2 finger protein ATL56-like [Cucurbita maxima]	[more]
XP_022929717.1	1.7e-77	82.02	RING-H2 finger protein ATL56-like [Cucurbita moschata]	[more]

BLAST of CSPI02G05570.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18670.1	3.1e-32	47.06	RING/U-box superfamily protein	[more]
AT4G30370.1	1.5e-23	39.74	RING/U-box superfamily protein	[more]
AT3G20395.1	1.9e-10	43.64	RING/U-box superfamily protein	[more]
AT1G74410.1	7.3e-10	32.18	RING/U-box superfamily protein	[more]
AT5G66070.1	9.6e-10	38.89	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 110..151 e-value: 1.7E-7 score: 40.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 109..152 e-value: 3.4E-12 score: 46.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 110..152 score: 12.312242
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 85..161 e-value: 2.5E-18 score: 67.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR46539	E3 UBIQUITIN-PROTEIN LIGASE ATL42	coord: 3..177
None	No IPR available	PANTHER	PTHR46539:SF9	RING-H2 FINGER PROTEIN ATL56	coord: 3..177
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 90..159

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G05570	CSPI02G05570	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G05570.1.utr5p1	CSPI02G05570.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G05570.1.cds1	CSPI02G05570.1.cds1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G05570.1.utr3p1	CSPI02G05570.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G05570.1	CSPI02G05570.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane