CSPI02G02260.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI02G02260.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Glyco_18 domain-containing protein
Location	Chr2: 1547792 .. 1548124 (-)
Sequence length	333
RNA-Seq Expression	CSPI02G02260.1
Synteny	CSPI02G02260.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTCAAAATTTTTGTGAATGGAGGCTATTGGTTCACCCACACCAATACCCACTTTCCCATTTCAAAAATTGATACCAATCTTTTCACTCATCTCTTCTGTGGTGGTTGTGTTAGTATCAACCTCCAAACTTATGAACTCTCCATTTCAAATTCCACAAAACCCCTAATTGACCAATTTTCCAAAGCCATCAAAGAGAAAAATCACGAGGTAAAAACTTTGTTGTCCATCAACGAATCAGAAGATGATGCAAAAGGTGATCATGGAAGATTTGCAGCCATGGCTAGGGACTCTTCGAACCGAACCGTGCGACGTTCATTTGATCTTTAA

mRNA sequence

ATGGCCTTCAAAATTTTTGTGAATGGAGGCTATTGGTTCACCCACACCAATACCCACTTTCCCATTTCAAAAATTGATACCAATCTTTTCACTCATCTCTTCTGTGGTGGTTGTGTTAGTATCAACCTCCAAACTTATGAACTCTCCATTTCAAATTCCACAAAACCCCTAATTGACCAATTTTCCAAAGCCATCAAAGAGAAAAATCACGAGGTAAAAACTTTGTTGTCCATCAACGAATCAGAAGATGATGCAAAAGGTGATCATGGAAGATTTGCAGCCATGGCTAGGGACTCTTCGAACCGAACCGTGCGACGTTCATTTGATCTTTAA

Coding sequence (CDS)

ATGGCCTTCAAAATTTTTGTGAATGGAGGCTATTGGTTCACCCACACCAATACCCACTTTCCCATTTCAAAAATTGATACCAATCTTTTCACTCATCTCTTCTGTGGTGGTTGTGTTAGTATCAACCTCCAAACTTATGAACTCTCCATTTCAAATTCCACAAAACCCCTAATTGACCAATTTTCCAAAGCCATCAAAGAGAAAAATCACGAGGTAAAAACTTTGTTGTCCATCAACGAATCAGAAGATGATGCAAAAGGTGATCATGGAAGATTTGCAGCCATGGCTAGGGACTCTTCGAACCGAACCGTGCGACGTTCATTTGATCTTTAA

Protein sequence

MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNRTVRRSFDL*

Homology

[Close]

BLAST of CSPI02G02260.1 vs. ExPASy Swiss-Prot
Match: O81862 (Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-10
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 0


Query: 7   VNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIK 66
           V   YWF    + FP++ ID++LFTHLFC     +N QT ++++S++ +P    F++ ++
Sbjct: 28  VKASYWF--PASEFPVTDIDSSLFTHLFC-AFADLNSQTNQVTVSSANQPKFSTFTQTVQ 87

Query: 67  EKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNRTVRRSF 109
            +N  VKTLLSI         D   +A+MA   SN T R+SF
Sbjct: 88  RRNPSVKTLLSIG----GGIADKTAYASMA---SNPTSRKSF 119

[Close]

BLAST of CSPI02G02260.1 vs. ExPASy Swiss-Prot
Match: A0A072UR65 (Class V chitinase CHIT5b OS=Medicago truncatula OX=3880 GN=CHIT5B PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 29/72 (40.28%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 7   VNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIK 66
           V G YW    N  FP + +DT+LFTH+F       N+ TY+L IS+S    ++ F+K  K
Sbjct: 35  VKGIYWL--ENPFFPPTTVDTSLFTHIFYSFLTPNNI-TYKLEISSSQILSLNTFTKTFK 94

Query: 67  EKNHEVKTLLSI 79
            K+    TL SI
Sbjct: 95  TKSPPAATLFSI 103

[Close]

BLAST of CSPI02G02260.1 vs. ExPASy TrEMBL
Match: A0A0A0LL51 (Glyco_18 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G008760 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.5e-50
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQ 60
           MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSIN QTYELSISNSTKPLIDQ
Sbjct: 1   MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINPQTYELSISNSTKPLIDQ 60

Query: 61  FSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNR 103
           FSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNR
Sbjct: 61  FSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNR 102

[Close]

BLAST of CSPI02G02260.1 vs. ExPASy TrEMBL
Match: A0A6J1KJH1 (chitinase-3-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111493752 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 64/105 (60.95%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 1   MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQ 60
           MA    VN GYWFT TN HFPISKID+NL+THLFC G  ++N QTYELS S++ KPLI  
Sbjct: 1   MAKNNIVNAGYWFTQTNAHFPISKIDSNLYTHLFC-GYANLNSQTYELSFSDTAKPLIHH 60

Query: 61  FSKAIKEKNHEVKTLLSINESEDDAKGDHG---RFAAMARDSSNR 103
           FS A+KE N +VKTLLSI        GDH     FAAMA  SSNR
Sbjct: 61  FSNAVKENNSKVKTLLSIG-------GDHASADSFAAMAASSSNR 97

[Close]

BLAST of CSPI02G02260.1 vs. ExPASy TrEMBL
Match: A0A6J1CQ34 (chitotriosidase-1-like OS=Momordica charantia OX=3673 GN=LOC111013117 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.8e-22
Identity = 62/102 (60.78%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 1   MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQ 60
           MA   FVN GYWFTHT++  P S+ID NL+THLFCG    +N QTYELSIS+S KPLI  
Sbjct: 1   MACNNFVNAGYWFTHTSSQLPASRIDANLYTHLFCGH-AGLNSQTYELSISDSAKPLIHH 60

Query: 61  FSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNR 103
           FS+ +KE N E+KTLLSI    DDAK +  RF AMA  SS+R
Sbjct: 61  FSQTVKENNSELKTLLSI--GGDDAKAE--RFGAMAAHSSHR 97

[Close]

BLAST of CSPI02G02260.1 vs. ExPASy TrEMBL
Match: A0A6J1CQ39 (oviduct-specific glycoprotein-like OS=Momordica charantia OX=3673 GN=LOC111013129 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 62/98 (63.27%), Postives = 71/98 (72.45%), Query Frame = 0


Query: 5   IFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKA 64
           +FVN GYWFTHTNT FP SKID NLFTHLFC     +N QTYELSIS+S K LI +FSK 
Sbjct: 6   LFVNAGYWFTHTNTQFPASKIDANLFTHLFCAH-AGLNSQTYELSISDSQKLLIHEFSKT 65

Query: 65  IKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNR 103
           +K+ N E+KTLLSI    DDAK +  RFAAMA    +R
Sbjct: 66  VKQNNPELKTLLSI--GGDDAKAE--RFAAMAASFFHR 98

[Close]

BLAST of CSPI02G02260.1 vs. ExPASy TrEMBL
Match: A0A6J1CPE3 (chitotriosidase-1-like OS=Momordica charantia OX=3673 GN=LOC111012956 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.4e-20
Identity = 59/102 (57.84%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 1   MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQ 60
           MA   FVN GYWFT TN+  P S+ID NL+ HLFC     +N QTYELSIS+S KPLI  
Sbjct: 1   MACITFVNAGYWFTQTNSQLPASRIDANLYPHLFCAH-AGLNSQTYELSISDSAKPLIHH 60

Query: 61  FSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNR 103
           FS+ +KE N E+KTLLSI    D+AK +  RF AMA +SS+R
Sbjct: 61  FSQTVKENNSELKTLLSI--GGDEAKAE--RFGAMAANSSHR 97

[Close]

BLAST of CSPI02G02260.1 vs. NCBI nr
Match: XP_004139401.1 (class V chitinase [Cucumis sativus] >KGN60736.1 hypothetical protein Csa_019448 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 9.4e-50
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQ 60
           MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSIN QTYELSISNSTKPLIDQ
Sbjct: 1   MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINPQTYELSISNSTKPLIDQ 60

Query: 61  FSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNR 103
           FSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNR
Sbjct: 61  FSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNR 102

[Close]

BLAST of CSPI02G02260.1 vs. NCBI nr
Match: KAG7030351.1 (Chitotriosidase-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.5 bits (293), Expect = 7.5e-23
Identity = 66/105 (62.86%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 1   MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQ 60
           MA    VN GYWFT TN HFPISKIDTNL+THLFC G  ++N QTYELS S+S KPLI  
Sbjct: 1   MAKNNIVNAGYWFTQTNAHFPISKIDTNLYTHLFC-GYANLNSQTYELSFSDSAKPLIRH 60

Query: 61  FSKAIKEKNHEVKTLLSINESEDDAKGDHG---RFAAMARDSSNR 103
           FS A+KE N +VKTLLSI        GDH     FAAMA  SSNR
Sbjct: 61  FSNAVKENNSKVKTLLSIG-------GDHASAESFAAMAATSSNR 97

[Close]

BLAST of CSPI02G02260.1 vs. NCBI nr
Match: KAG6599436.1 (Class V chitinase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.5 bits (293), Expect = 7.5e-23
Identity = 66/105 (62.86%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 1   MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQ 60
           MA    VN GYWFT TN HFPISKIDTNL+THLFC G  ++N QTYELS S+S KPLI  
Sbjct: 1   MAKNNIVNAGYWFTQTNAHFPISKIDTNLYTHLFC-GYANLNSQTYELSFSDSAKPLIRH 60

Query: 61  FSKAIKEKNHEVKTLLSINESEDDAKGDHG---RFAAMARDSSNR 103
           FS A+KE N +VKTLLSI        GDH     FAAMA  SSNR
Sbjct: 61  FSNAVKENNSKVKTLLSIG-------GDHASAESFAAMAATSSNR 97

[Close]

BLAST of CSPI02G02260.1 vs. NCBI nr
Match: XP_022999353.1 (chitinase-3-like protein 2 [Cucurbita maxima])

HSP 1 Score: 115.5 bits (288), Expect = 2.8e-22
Identity = 64/105 (60.95%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 1   MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQ 60
           MA    VN GYWFT TN HFPISKID+NL+THLFC G  ++N QTYELS S++ KPLI  
Sbjct: 1   MAKNNIVNAGYWFTQTNAHFPISKIDSNLYTHLFC-GYANLNSQTYELSFSDTAKPLIHH 60

Query: 61  FSKAIKEKNHEVKTLLSINESEDDAKGDHG---RFAAMARDSSNR 103
           FS A+KE N +VKTLLSI        GDH     FAAMA  SSNR
Sbjct: 61  FSNAVKENNSKVKTLLSIG-------GDHASADSFAAMAASSSNR 97

[Close]

BLAST of CSPI02G02260.1 vs. NCBI nr
Match: XP_023545460.1 (chitinase-3-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.8 bits (286), Expect = 4.9e-22
Identity = 64/102 (62.75%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 1   MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQ 60
           MA    VN GYWFT TN H PISKIDTNL+THLFC G  ++N QTYELS S+S KPLI  
Sbjct: 1   MAKNNIVNAGYWFTQTNAHLPISKIDTNLYTHLFC-GYANLNSQTYELSFSDSAKPLIHH 60

Query: 61  FSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNR 103
           FS  +KE N +VKTLLSI    DDA+ +   FAAMA  SSNR
Sbjct: 61  FSSTVKENNSKVKTLLSI--GGDDARAE--SFAAMAATSSNR 97

[Close]

BLAST of CSPI02G02260.1 vs. TAIR 10
Match: AT4G19810.1 (Glycosyl hydrolase family protein with chitinase insertion domain )

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-11
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 0


Query: 7   VNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIK 66
           V   YWF    + FP++ ID++LFTHLFC     +N QT ++++S++ +P    F++ ++
Sbjct: 28  VKASYWF--PASEFPVTDIDSSLFTHLFC-AFADLNSQTNQVTVSSANQPKFSTFTQTVQ 87

Query: 67  EKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNRTVRRSF 109
            +N  VKTLLSI         D   +A+MA   SN T R+SF
Sbjct: 88  RRNPSVKTLLSIG----GGIADKTAYASMA---SNPTSRKSF 119

[Close]

BLAST of CSPI02G02260.1 vs. TAIR 10
Match: AT4G19820.1 (Glycosyl hydrolase family protein with chitinase insertion domain )

HSP 1 Score: 65.1 bits (157), Expect = 4.1e-11
Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 7   VNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIK 66
           V   YWF  + +  P+++ID++LFTHLFC     IN  TY++ +S+  KP    F++ ++
Sbjct: 26  VKATYWFAESES--PLAQIDSSLFTHLFC-AFADINTLTYQVIVSSRNKPKFSTFTQTVR 85

Query: 67  EKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNRTVRRSF 109
            +N  VKTLLSI        GD     A A  +SN T R+ F
Sbjct: 86  RRNPTVKTLLSIG-------GDFTYNFAFASMASNPTSRKLF 117

[Close]

BLAST of CSPI02G02260.1 vs. TAIR 10
Match: AT4G19750.1 (Glycosyl hydrolase family protein with chitinase insertion domain )

HSP 1 Score: 60.8 bits (146), Expect = 7.7e-10
Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 0


Query: 7   VNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIK 66
           V   YW       FP   ID+  FTHLFC     ++  T+E++IS +    +  F+  +K
Sbjct: 14  VKASYWVVKPENDFPAGNIDSTRFTHLFC-AFADVDSSTHEVTISAANSCQVSSFTHTVK 73

Query: 67  EKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNR 103
           +KN +V+TLLSI   +     D    A+MA +S NR
Sbjct: 74  DKNTDVQTLLSIGGKD----ADKAVLASMASNSKNR 104

[Close]

BLAST of CSPI02G02260.1 vs. TAIR 10
Match: AT4G19800.1 (Glycosyl hydrolase family protein with chitinase insertion domain )

HSP 1 Score: 58.9 bits (141), Expect = 2.9e-09
Identity = 38/110 (34.55%), Postives = 59/110 (53.64%), Query Frame = 0


Query: 7   VNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIK 66
           V   YWF  T+  FP + ID++LFTHLFC     +  ++YE++I+   +     F++ ++
Sbjct: 7   VKASYWFPATD--FPATDIDSSLFTHLFC-TFADLEAESYEITIATWNQAPFHAFTETVQ 66

Query: 67  EKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNR--------TVRRSF 109
           ++N  VKTLLSI         D   FA+MA +  +R        TV RS+
Sbjct: 67  QRNPHVKTLLSIG----GGNADKDAFASMASNPDSRASFIQSTITVARSY 109

[Close]

BLAST of CSPI02G02260.1 vs. TAIR 10
Match: AT4G19760.1 (Glycosyl hydrolase family protein with chitinase insertion domain )

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-08
Identity = 37/104 (35.58%), Postives = 53/104 (50.96%), Query Frame = 0


Query: 7   VNGGYWFTHTNTH--------FPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLI 66
           V   YWF    +          P S ID+ LFTHLFC     ++  T+E++IS +     
Sbjct: 14  VKASYWFPDGKSQSPECLSQGTPSSFIDSTLFTHLFC-AFADVDSSTHEVTISAANSYQF 73

Query: 67  DQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNR 103
             F++ +KEKN +V+TLLSI   +     D    A+MA +S NR
Sbjct: 74  SSFTETVKEKNTDVQTLLSIGGKD----ADKAVLASMASNSKNR 112

The following BLAST results are available for this feature:

BLAST of CSPI02G02260.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81862	3.4e-10	38.24	Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1	[more]
A0A072UR65	1.2e-04	40.28	Class V chitinase CHIT5b OS=Medicago truncatula OX=3880 GN=CHIT5B PE=1 SV=1	[more]

BLAST of CSPI02G02260.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL51	4.5e-50	99.02	Glyco_18 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G008760 PE...	[more]
A0A6J1KJH1	1.4e-22	60.95	chitinase-3-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111493752 PE=4 SV=1	[more]
A0A6J1CQ34	6.8e-22	60.78	chitotriosidase-1-like OS=Momordica charantia OX=3673 GN=LOC111013117 PE=4 SV=1	[more]
A0A6J1CQ39	2.0e-21	63.27	oviduct-specific glycoprotein-like OS=Momordica charantia OX=3673 GN=LOC11101312...	[more]
A0A6J1CPE3	8.4e-20	57.84	chitotriosidase-1-like OS=Momordica charantia OX=3673 GN=LOC111012956 PE=4 SV=1	[more]

BLAST of CSPI02G02260.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139401.1	9.4e-50	99.02	class V chitinase [Cucumis sativus] >KGN60736.1 hypothetical protein Csa_019448 ...	[more]
KAG7030351.1	7.5e-23	62.86	Chitotriosidase-1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6599436.1	7.5e-23	62.86	Class V chitinase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022999353.1	2.8e-22	60.95	chitinase-3-like protein 2 [Cucurbita maxima]	[more]
XP_023545460.1	4.9e-22	62.75	chitinase-3-like protein 2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI02G02260.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19810.1	2.4e-11	38.24	Glycosyl hydrolase family protein with chitinase insertion domain	[more]
AT4G19820.1	4.1e-11	38.24	Glycosyl hydrolase family protein with chitinase insertion domain	[more]
AT4G19750.1	7.7e-10	35.42	Glycosyl hydrolase family protein with chitinase insertion domain	[more]
AT4G19800.1	2.9e-09	34.55	Glycosyl hydrolase family protein with chitinase insertion domain	[more]
AT4G19760.1	1.9e-08	35.58	Glycosyl hydrolase family protein with chitinase insertion domain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001223	Glycoside hydrolase family 18, catalytic domain	PFAM	PF00704	Glyco_hydro_18	coord: 10..102 e-value: 3.6E-7 score: 30.2
IPR001223	Glycoside hydrolase family 18, catalytic domain	PROSITE	PS51910	GH18_2	coord: 6..110 score: 11.506378
None	No IPR available	GENE3D	3.20.20.80	Glycosidases	coord: 4..105 e-value: 1.4E-13 score: 52.7
None	No IPR available	PANTHER	PTHR11177	CHITINASE	coord: 6..103
None	No IPR available	PANTHER	PTHR11177:SF369	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE	coord: 6..103
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	51445	(Trans)glycosidases	coord: 9..103

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G02260	CSPI02G02260	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G02260.1.cds1	CSPI02G02260.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G02260.1	CSPI02G02260.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006032	chitin catabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0004568	chitinase activity
molecular_function	GO:0008061	chitin binding