CSPI01G13600.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI01G13600.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr1: 9124779 .. 9125488 (-)
Sequence length	710
RNA-Seq Expression	CSPI01G13600.1
Synteny	CSPI01G13600.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACAATTCAACAACCTAACCCTCATTTCCACTAAATACTTCAATTACAAGTCCCAATAACAACAGAAAAGAAACTTCCAAAACTTAGCGTTTTCTTTCTCCTCTTTTGATTTTCATTCCAAAAATCTAATCAGCCCTTTTCTTCCCTCCTCTCCTCATTATAGTTAACAGAGGTTTGTGTGAAAAATGAGAAGACTAACACTTGCTGCAATCCTCCTGTTGGTGTTGATCACCTCGGTCATGCTAATTGAAGGGACAACTCTTAGGAGTCCCCGACGACTGATTGATATAAACAAGCAGAGAGAGCGGGAGATCAACGAGAATGAGAAGGCAAAAACTAGGCGACCTAACGATAGTGGTGAATACAATCACCATGGATGTCTTAGAAGAGATGTGGATTGTTGGAGTAACGCAAAACAAAGTACGGACTAATGTAGATATACACAATCAAAGTTAGCCGGCTAAATGTTTTTGTGTATCTAAATAAATAACTAAGACTTCGGTTGGTAATCATTCGCCGGCTAGTTATAGTACTTTACATCTTTCCGTTCTGTTTTTGTAATATATGATGGAGTAAGAACTTCTTGTTTGATTAGTAAATGATAAATATTTGAGTTTTGTAAGATTATATGTTTGGTTATTTTTCTAACTTGTCTGTGAGACTAAAGTAAAATTTGTTTAAAGGAAATAAAAATATTCATAATTCCCAT

mRNA sequence

TCACAATTCAACAACCTAACCCTCATTTCCACTAAATACTTCAATTACAAGTCCCAATAACAACAGAAAAGAAACTTCCAAAACTTAGCGTTTTCTTTCTCCTCTTTTGATTTTCATTCCAAAAATCTAATCAGCCCTTTTCTTCCCTCCTCTCCTCATTATAGTTAACAGAGGTTTGTGTGAAAAATGAGAAGACTAACACTTGCTGCAATCCTCCTGTTGGTGTTGATCACCTCGGTCATGCTAATTGAAGGGACAACTCTTAGGAGTCCCCGACGACTGATTGATATAAACAAGCAGAGAGAGCGGGAGATCAACGAGAATGAGAAGGCAAAAACTAGGCGACCTAACGATAGTGGTGAATACAATCACCATGGATGTCTTAGAAGAGATGTGGATTGTTGGAGTAACGCAAAACAAAGTACGGACTAATGTAGATATACACAATCAAAGTTAGCCGGCTAAATGTTTTTGTGTATCTAAATAAATAACTAAGACTTCGGTTGGTAATCATTCGCCGGCTAGTTATAGTACTTTACATCTTTCCGTTCTGTTTTTGTAATATATGATGGAGTAAGAACTTCTTGTTTGATTAGTAAATGATAAATATTTGAGTTTTGTAAGATTATATGTTTGGTTATTTTTCTAACTTGTCTGTGAGACTAAAGTAAAATTTGTTTAAAGGAAATAAAAATATTCATAATTCCCAT

Coding sequence (CDS)

ATGAGAAGACTAACACTTGCTGCAATCCTCCTGTTGGTGTTGATCACCTCGGTCATGCTAATTGAAGGGACAACTCTTAGGAGTCCCCGACGACTGATTGATATAAACAAGCAGAGAGAGCGGGAGATCAACGAGAATGAGAAGGCAAAAACTAGGCGACCTAACGATAGTGGTGAATACAATCACCATGGATGTCTTAGAAGAGATGTGGATTGTTGGAGTAACGCAAAACAAAGTACGGACTAA

Protein sequence

MRRLTLAAILLLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEYNHHGCLRRDVDCWSNAKQSTD*

Homology

[Close]

BLAST of CSPI01G13600.1 vs. ExPASy TrEMBL
Match: A0A0A0LV16 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G119910 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.0e-34
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MRRLTLAAILLLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60
          MRRLTLAAIL+LVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCLRRDVDCWSNAKQSTD 82
          NHHGCLRRDVDCWSNAKQSTD
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

[Close]

BLAST of CSPI01G13600.1 vs. NCBI nr
Match: KGN64824.1 (hypothetical protein Csa_022834 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 4.1e-34
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MRRLTLAAILLLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60
          MRRLTLAAIL+LVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCLRRDVDCWSNAKQSTD 82
          NHHGCLRRDVDCWSNAKQSTD
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

The following BLAST results are available for this feature:

BLAST of CSPI01G13600.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G13600.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV16	2.0e-34	98.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G119910 PE=4 SV=1	[more]

BLAST of CSPI01G13600.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64824.1	4.1e-34	98.77	hypothetical protein Csa_022834 [Cucumis sativus]	[more]

BLAST of CSPI01G13600.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 32..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..64

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G13600	CSPI01G13600	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G13600.1.utr3p1	CSPI01G13600.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G13600.1.cds1	CSPI01G13600.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G13600.1.utr5p1	CSPI01G13600.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G13600.1	CSPI01G13600.1-protein	polypeptide