Bhi12M000828 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi12M000828
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Unknown protein
Location	chr12: 28651246 .. 28651398 (+)
Sequence length	153
RNA-Seq Expression	Bhi12M000828
Synteny	Bhi12M000828

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTTGAAGGCTTCAGAATGGGTTTTTCGTATTCCTGATTTAAACCAAATTTACATACCGAAGAGAAGAAGATCTTCCGGTGCCGGAAATAAAGAAGAACCTAAGATTGAAACCGATTTTCCAATGTCTATGTCAGAGGCTGCGGATATTCTG

mRNA sequence

AGGTTGAAGGCTTCAGAATGGGTTTTTCGTATTCCTGATTTAAACCAAATTTACATACCGAAGAGAAGAAGATCTTCCGGTGCCGGAAATAAAGAAGAACCTAAGATTGAAACCGATTTTCCAATGTCTATGTCAGAGGCTGCGGATATTCTG

Coding sequence (CDS)

AGGTTGAAGGCTTCAGAATGGGTTTTTCGTATTCCTGATTTAAACCAAATTTACATACCGAAGAGAAGAAGATCTTCCGGTGCCGGAAATAAAGAAGAACCTAAGATTGAAACCGATTTTCCAATGTCTATGTCAGAGGCTGCGGATATTCTG

Protein sequence

RLKASEWVFRIPDLNQIYIPKRRRSSGAGNKEEPKIETDFPMSMSEAADIL

Homology

[Close]

BLAST of Bhi12M000828 vs. NCBI nr
Match: XP_038874962.1 (putative B3 domain-containing protein At5g35780 [Benincasa hispida])

HSP 1 Score: 89.7 bits (221), Expect = 7.7e-15
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 9  FRIPDLNQIYIPKRRRSSGAGNKEEPKIETDFPMSMSEAADIL 52
          FRIPDLNQIYIPKRRRSSGAGNKEEPKIETDFPMSMSEAADIL
Sbjct: 14 FRIPDLNQIYIPKRRRSSGAGNKEEPKIETDFPMSMSEAADIL 56

[Close]

BLAST of Bhi12M000828 vs. NCBI nr
Match: XP_038874960.1 (B3 domain-containing protein At2g31420-like [Benincasa hispida])

HSP 1 Score: 84.7 bits (208), Expect = 2.5e-13
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 9  FRIPDLNQIYIPKRRRSSGAGNKEEPKIETDFPMSMSEAADIL 52
          F IPDLNQIYIPKRRRSSGAGNKE+P+IETDFPMSMSEAAD+L
Sbjct: 3  FHIPDLNQIYIPKRRRSSGAGNKEQPEIETDFPMSMSEAADVL 45

[Close]

BLAST of Bhi12M000828 vs. NCBI nr
Match: XP_038876237.1 (putative B3 domain-containing protein At3g24850 [Benincasa hispida])

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 11 IPDLNQIYIPKRRR-SSGAGNKEEPKIETDFPMSMSEAADIL 52
          +PDLN+IYIP+RRR SSGAG KE+PK ET+ P+++ EAA IL
Sbjct: 16 LPDLNEIYIPRRRRGSSGAGKKEQPKTETELPLTVLEAAAIL 57

[Close]

BLAST of Bhi12M000828 vs. NCBI nr
Match: XP_016903400.1 (PREDICTED: putative B3 domain-containing protein At3g24850 [Cucumis melo] >KAA0046321.1 putative B3 domain-containing protein [Cucumis melo var. makuwa] >TYK30485.1 putative B3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 10 RIPDLNQIYIPKRRR--SSGAGNKEEPKIETDFPMSMSEAADIL 52
          ++PDLN IYIP++RR  SSGAG KE    ET+ P+SM+EAA IL
Sbjct: 16 QLPDLNDIYIPRKRRGSSSGAGKKERSMTETELPLSMAEAASIL 59

[Close]

BLAST of Bhi12M000828 vs. NCBI nr
Match: XP_031741057.1 (B3 domain-containing protein At2g31420-like [Cucumis sativus] >KAE8648584.1 hypothetical protein Csa_009311 [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 10 RIPDLNQIYIPKRRR--SSGAGNKEEPKIETDFPMSMSEAADIL 52
          ++PDLN +Y+P++RR  SSG G KE+   ET+ P+SM+EAA IL
Sbjct: 16 QLPDLNNVYVPRKRRGSSSGVGKKEQSMTETELPLSMAEAASIL 59

[Close]

BLAST of Bhi12M000828 vs. ExPASy TrEMBL
Match: A0A5A7TY94 (Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00280 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.0e-05
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 10 RIPDLNQIYIPKRRR--SSGAGNKEEPKIETDFPMSMSEAADIL 52
          ++PDLN IYIP++RR  SSGAG KE    ET+ P+SM+EAA IL
Sbjct: 16 QLPDLNDIYIPRKRRGSSSGAGKKERSMTETELPLSMAEAASIL 59

[Close]

BLAST of Bhi12M000828 vs. ExPASy TrEMBL
Match: A0A1S4E600 (putative B3 domain-containing protein At3g24850 OS=Cucumis melo OX=3656 GN=LOC103504562 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.0e-05
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 10 RIPDLNQIYIPKRRR--SSGAGNKEEPKIETDFPMSMSEAADIL 52
          ++PDLN IYIP++RR  SSGAG KE    ET+ P+SM+EAA IL
Sbjct: 16 QLPDLNDIYIPRKRRGSSSGAGKKERSMTETELPLSMAEAASIL 59

[Close]

BLAST of Bhi12M000828 vs. ExPASy TrEMBL
Match: A0A0A0KUX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570410 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-04
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 10 RIPDLNQIYIPKRRR--SSGAGNKEEPKIETDFPMSMSEAADIL 52
          ++PDLN +Y+P++RR  SSG G KE+   ET+ P+SM+EAA IL
Sbjct: 14 QLPDLNNVYVPRKRRGSSSGVGKKEQSMTETELPLSMAEAASIL 57

[Close]

BLAST of Bhi12M000828 vs. ExPASy TrEMBL
Match: A0A0A0KP87 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G544060 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-04
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 10 RIPDLNQIYIPKRRR--SSGAGNKEEPKIETDFPMSMSEAADIL 52
          ++PDLN +Y+P++RR  SSG G KE+   ET+ P+SM+EAA IL
Sbjct: 16 QLPDLNNVYVPRKRRGSSSGVGKKEQSMTETELPLSMAEAASIL 59

[Close]

BLAST of Bhi12M000828 vs. ExPASy TrEMBL
Match: A0A5A7TWX2 (Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold663G00300 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.0e-04
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 11 IPDLNQIYIPKRRR--SSGAGNKEEPKIETDFPMSMSEAADIL 52
          +PDL+ IYIP++RR  SSGAG KE+   ET+ P+SM+EAA IL
Sbjct: 17 LPDLDNIYIPRKRRGSSSGAGKKEQSITETELPLSMAEAASIL 59

The following BLAST results are available for this feature:

BLAST of Bhi12M000828 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi12M000828 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi12M000828 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874962.1	7.7e-15	100.00	putative B3 domain-containing protein At5g35780 [Benincasa hispida]	[more]
XP_038874960.1	2.5e-13	90.70	B3 domain-containing protein At2g31420-like [Benincasa hispida]	[more]
XP_038876237.1	1.1e-05	66.67	putative B3 domain-containing protein At3g24850 [Benincasa hispida]	[more]
XP_016903400.1	1.2e-04	61.36	PREDICTED: putative B3 domain-containing protein At3g24850 [Cucumis melo] >KAA00...	[more]
XP_031741057.1	3.6e-04	54.55	B3 domain-containing protein At2g31420-like [Cucumis sativus] >KAE8648584.1 hypo...	[more]

BLAST of Bhi12M000828 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TY94	6.0e-05	61.36	Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S4E600	6.0e-05	61.36	putative B3 domain-containing protein At3g24850 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KUX9	1.7e-04	54.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570410 PE=4 SV=1	[more]
A0A0A0KP87	1.7e-04	54.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G544060 PE=4 SV=1	[more]
A0A5A7TWX2	3.0e-04	60.47	Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..51

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi12G000828	Bhi12G000828	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi12M000828.exon1	Bhi12M000828.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi12M000828	cds.Bhi12M000828	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi12M000828	Bhi12M000828-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding