Bhi11M000559 (mRNA) Wax gourd (B227) v1

Overview
NameBhi11M000559
TypemRNA
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionUnknown protein
Locationchr11: 17780253 .. 17780477 (-)
Sequence length225
RNA-Seq ExpressionBhi11M000559
SyntenyBhi11M000559
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCATTCGGGTGCCGAGTTTGGCAGCAGCAAAAGAACGCTCATCAATTCAGCCCTTGAAAACAGAACCGAAGCCACCTTCTCCTACAACACTATTTGGACGAAAGTTCCTGGTGGCTACTTTAAGCTCAGTGAAGCTAAAGCTCTTCAAATTGGAGGACTGCAAGATTTTACCTTCAGTTCGTGTGGTGGCATTGAGGACAAAAATAAACACAAACTCCTGA

mRNA sequence

ATGACCATTCGGGTGCCGAGTTTGGCAGCAGCAAAAGAACGCTCATCAATTCAGCCCTTGAAAACAGAACCGAAGCCACCTTCTCCTACAACACTATTTGGACGAAAGTTCCTGGTGGCTACTTTAAGCTCAGTGAAGCTAAAGCTCTTCAAATTGGAGGACTGCAAGATTTTACCTTCAGTTCGTGTGGTGGCATTGAGGACAAAAATAAACACAAACTCCTGA

Coding sequence (CDS)

ATGACCATTCGGGTGCCGAGTTTGGCAGCAGCAAAAGAACGCTCATCAATTCAGCCCTTGAAAACAGAACCGAAGCCACCTTCTCCTACAACACTATTTGGACGAAAGTTCCTGGTGGCTACTTTAAGCTCAGTGAAGCTAAAGCTCTTCAAATTGGAGGACTGCAAGATTTTACCTTCAGTTCGTGTGGTGGCATTGAGGACAAAAATAAACACAAACTCCTGA

Protein sequence

MTIRVPSLAAAKERSSIQPLKTEPKPPSPTTLFGRKFLVATLSSVKLKLFKLEDCKILPSVRVVALRTKINTNS
Homology
BLAST of Bhi11M000559 vs. NCBI nr
Match: RWW62025.1 (hypothetical protein BHE74_00030866 [Ensete ventricosum])

HSP 1 Score: 76.6 bits (187), Expect = 9.8e-11
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 1   MTIRVPSLAAAKERSSIQPLKTEPKPPSPTTLFGRKFLVATLSSVKLKLFKLEDCKILPS 60
           M +R+    AA   SSI PLKTEPKPPSP TL GRKFLVA LSS+K+KLF+L+D KI PS
Sbjct: 49  MLLRLHVSVAANVCSSIHPLKTEPKPPSPNTLSGRKFLVAVLSSLKVKLFRLDDVKISPS 108

Query: 61  VRVV 65
           +R V
Sbjct: 109 LRGV 112

BLAST of Bhi11M000559 vs. NCBI nr
Match: KAE8820937.1 (hypothetical protein D1007_00965 [Hordeum vulgare])

HSP 1 Score: 63.9 bits (154), Expect = 6.6e-07
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 1   MTIRVPSLAAAKERSSIQPLKTEPKPPSPTTLFGRKFLVATLSSVKLKLFKLEDCKI 58
           MT+ VP+ A AK  SS  PL  E KPPSP+TL  RKFLVA LSS+K KL+ L DC+I
Sbjct: 148 MTMPVPNRADAKVISSTYPLNIESKPPSPSTLSARKFLVAVLSSLKAKLYTLADCRI 204

BLAST of Bhi11M000559 vs. NCBI nr
Match: KAE8812920.1 (putative ovule protein [Hordeum vulgare])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 1  MTIRVPSLAAAKERSSIQPLKTEPKPPSPTTLFGRKFLVATLSSVKLKLFKLEDCKILPS 60
          MT+ VPS A  K   S  PL TEPKPPSP+TL  +KFLVA LSS+K+KL+ L D +I PS
Sbjct: 14 MTMPVPSHADEKVILSTHPLNTEPKPPSPSTLSTQKFLVAFLSSLKVKLYTLADRRISPS 73

Query: 61 V 62
          +
Sbjct: 74 L 74

BLAST of Bhi11M000559 vs. ExPASy TrEMBL
Match: A0A2P2KZV4 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.3e-12
Identity = 42/61 (68.85%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 1  MTIRVPSLAAAKERSSIQPLKTEPKPPSPTTLFGRKFLVATLSSVKLKLFKLEDCKILPS 60
          MTI VP L A +E SS  PLKT+PKPPSP TL GRKFLVA  SS+KL  FK EDCKI PS
Sbjct: 1  MTIPVPGLVAFRECSSSHPLKTDPKPPSPITLSGRKFLVAVFSSLKLNAFKFEDCKISPS 60

Query: 61 V 62
          +
Sbjct: 61 L 61

BLAST of Bhi11M000559 vs. ExPASy TrEMBL
Match: A0A0V0HBU5 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.8e-11
Identity = 43/64 (67.19%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 1  MTIRVPSLAAAKERSSIQPLKTEPKPPSPTTLFGRKFLVATLSSVKLKLFKLEDCKILPS 60
          M   VP L AA   SSI PLKT+P PPSP+TL GRKFLVA L S KLKLFKL DC I PS
Sbjct: 1  MITPVPGLVAANVFSSIHPLKTDPNPPSPSTLSGRKFLVAVLRSEKLKLFKLGDCNISPS 60

Query: 61 VRVV 65
          + VV
Sbjct: 61 LLVV 64

BLAST of Bhi11M000559 vs. ExPASy TrEMBL
Match: A0A7C9F0H9 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.7e-11
Identity = 42/60 (70.00%), Postives = 44/60 (73.33%), Query Frame = 0

Query: 6  PSLAAAKERSSIQPLKTEPKPPSPTTLFGRKFLVATLSSVKLKLFKLEDCKILPSVRVVA 65
          P L    E SSI PLKT PKPPSPTTL GRKF VA LSS+KLKLFKLEDCK  P +  VA
Sbjct: 4  PGLVGVSECSSIHPLKTAPKPPSPTTLSGRKFRVAALSSLKLKLFKLEDCKRSPLLWGVA 63

BLAST of Bhi11M000559 vs. ExPASy TrEMBL
Match: A0A0V0H9M8 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.6e-09
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 0

Query: 6  PSLAAAKERSSIQPLKTEPKPPSPTTLFGRKFLVATLSSVKLKLFKLEDCKILPSVRVV 65
          P   A    SS  PLKTEPKPPSP+TL GRKFLV   SS+K+KL KL+DCKI PS+R V
Sbjct: 4  PGFDAKSVCSSTHPLKTEPKPPSPSTLSGRKFLVDARSSLKVKLLKLDDCKISPSLRGV 62

BLAST of Bhi11M000559 vs. ExPASy TrEMBL
Match: A0A0A9M5N9 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.3e-04
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 0

Query: 15 SSIQPLKTEPKPPSPTTLFGRKFLVATLSSVKLKLFKLEDCKILPS 61
          SS QPL T PKPPSP+T+ G KFLVA LSS  +K+ +L   +ILPS
Sbjct: 13 SSTQPLYTRPKPPSPSTVSGLKFLVAALSSANVKMRRLGTSRILPS 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
RWW62025.19.8e-1165.63hypothetical protein BHE74_00030866 [Ensete ventricosum][more]
KAE8820937.16.6e-0761.40hypothetical protein D1007_00965 [Hordeum vulgare][more]
KAE8812920.11.1e-0659.02putative ovule protein [Hordeum vulgare][more]
Match NameE-valueIdentityDescription
A0A2P2KZV43.3e-1268.85Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A0V0HBU52.8e-1167.19Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1[more]
A0A7C9F0H94.7e-1170.00Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A0V0H9M82.6e-0964.41Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1[more]
A0A0A9M5N93.3e-0460.87Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi11G000559Bhi11G000559gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi11M000559.exon1Bhi11M000559.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi11M000559cds.Bhi11M000559CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi11M000559Bhi11M000559-proteinpolypeptide