Bhi09M002857 (mRNA) Wax gourd (B227) v1

Overview
NameBhi09M002857
TypemRNA
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionCLAVATA3/ESR (CLE)-related protein 1
Locationchr9: 88236115 .. 88237236 (+)
Sequence length1122
RNA-Seq ExpressionBhi09M002857
SyntenyBhi09M002857
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAGCTTTTTAGTTGAATAATAATTTTATCTACTCAAAGAAATTAAATGAACTGAGGGCAAAATTATTATTTTAATTTTTTAATTTACAGAAAAAGGTAAAAGAAATAATTGCCGGCGGAAGAGATTATGGCAAATTGGTTGGGAAAGCCACTGACTTTTATTTTAATTTTTCTCTTAAAAAATAATAAAAATCACTTTTTCGTCACATTGACTTTTTATTTTTTATTTTTTATTTTTTGCACTCACTAACAAAATTTTGTGTTTTTTTATTGACCCTTTATTTCTCTTTGCTTATGAAATCTATATATATAGGTTATTGTATAAGGTGTTAGGAAATCCAACAAAGAAAAGAAAAAACTAAACTCTCTTGAAGAAGTTGAATGGCTTGTCGTCTAAAGCTCTCGTTTTGGGTCGTGGTGTTGATATTGCTCTTGTGTTCTTTCAATTCTGAAAGTCGTTTGCTTTCGTCATCGCCATCACCGTCTTCGAATAAGAAAAACGAATTATTTGTAAAGAATGTGGAAGAAATGTTGAAGTTTATCATGGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTTTCCAAAAGACTCAGTCCTGGAGGACCTGATCCACGCCATCATTAGATTTCTTCTTCTCTTTCATTCTACACTTCTTTTTCCTCTTTATTTTTAGTTCAACAATCGCCGTATGGAAGTTGAACTAGAAATGATACCGAGTGCCTTTGTTCATTCGATTATGCTCATATTAATATCATTGTACGTTTGTTTTTGTTTTTCTTGTGAGTTGAGAGAGGATAATCTATGTCGGTTTTGTAGATCAAAGAATGAGATAATATATGTCTATATATATACCACATTATTATTCCCTCTTAATTTGATTTTGTTTTTTATTAGAATTTTTTTTTTTTTTTTTACATAAGAGAGATAAAGAGTTTTAGAGTCGCAACAATGTATATCTAAAGTTATTCATGTGATTTTGATCTATGATAATGACGGATAACAAAATTAAAGCTAATTATTCTCTATCTTTTATGGAATTGAAATTTTAATCTTTTGGACGAGAATACACCATTTATATTATAGAAACTAAGAAGAAAATAATTGCGGCGAGCCAAAAGGAAA

mRNA sequence

TAAGCTTTTTAGTTGAATAATAATTTTATCTACTCAAAGAAATTAAATGAACTGAGGGCAAAATTATTATTTTAATTTTTTAATTTACAGAAAAAGGTAAAAGAAATAATTGCCGGCGGAAGAGATTATGGCAAATTGGTTGGGAAAGCCACTGACTTTTATTTTAATTTTTCTCTTAAAAAATAATAAAAATCACTTTTTCGTCACATTGACTTTTTATTTTTTATTTTTTATTTTTTGCACTCACTAACAAAATTTTGTGTTTTTTTATTGACCCTTTATTTCTCTTTGCTTATGAAATCTATATATATAGGTTATTGTATAAGGTGTTAGGAAATCCAACAAAGAAAAGAAAAAACTAAACTCTCTTGAAGAAGTTGAATGGCTTGTCGTCTAAAGCTCTCGTTTTGGGTCGTGGTGTTGATATTGCTCTTGTGTTCTTTCAATTCTGAAAGTCGTTTGCTTTCGTCATCGCCATCACCGTCTTCGAATAAGAAAAACGAATTATTTGTAAAGAATGTGGAAGAAATGTTGAAGTTTATCATGGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTTTCCAAAAGACTCAGTCCTGGAGGACCTGATCCACGCCATCATTAGATTTCTTCTTCTCTTTCATTCTACACTTCTTTTTCCTCTTTATTTTTAGTTCAACAATCGCCGTATGGAAGTTGAACTAGAAATGATACCGAGTGCCTTTGTTCATTCGATTATGCTCATATTAATATCATTGTACGTTTGTTTTTGTTTTTCTTGTGAGTTGAGAGAGGATAATCTATGTCGGTTTTGTAGATCAAAGAATGAGATAATATATGTCTATATATATACCACATTATTATTCCCTCTTAATTTGATTTTGTTTTTTATTAGAATTTTTTTTTTTTTTTTTACATAAGAGAGATAAAGAGTTTTAGAGTCGCAACAATGTATATCTAAAGTTATTCATGTGATTTTGATCTATGATAATGACGGATAACAAAATTAAAGCTAATTATTCTCTATCTTTTATGGAATTGAAATTTTAATCTTTTGGACGAGAATACACCATTTATATTATAGAAACTAAGAAGAAAATAATTGCGGCGAGCCAAAAGGAAA

Coding sequence (CDS)

ATGGCTTGTCGTCTAAAGCTCTCGTTTTGGGTCGTGGTGTTGATATTGCTCTTGTGTTCTTTCAATTCTGAAAGTCGTTTGCTTTCGTCATCGCCATCACCGTCTTCGAATAAGAAAAACGAATTATTTGTAAAGAATGTGGAAGAAATGTTGAAGTTTATCATGGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTTTCCAAAAGACTCAGTCCTGGAGGACCTGATCCACGCCATCATTAG

Protein sequence

MACRLKLSFWVVVLILLLCSFNSESRLLSSSPSPSSNKKNELFVKNVEEMLKFIMEEKEKLGRHFVSKRLSPGGPDPRHH
Homology
[Close]
BLAST of Bhi09M002857 vs. ExPASy Swiss-Prot
Match: A0A072V9Z0 (CLAVATA3/ESR (CLE)-related protein 33 OS=Medicago truncatula OX=3880 GN=CLE33 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.5e-04
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 0 

Query: 1  MACRLKLSFWVVVLILLLCSFNSESRLLSSSPSPSSNKKNELFVKNVEEMLKFIMEEKEK 60
          MA    L F ++   +L+C    ++R L SS S S+   +  FV++V++++K IM  K+ 
Sbjct: 1  MASWRMLCFVLLFTSILIC---HDARPLPSSLSSSNG--SPAFVESVKQVVKEIMRRKQL 60

Query: 61 LGRHFVSKRLSPGGPDPRHH 81
          LG  + + RLSP GPDP HH
Sbjct: 61 LGTQYSTNRLSPSGPDPHHH 75

[Close]
BLAST of Bhi09M002857 vs. ExPASy TrEMBL
Match: A0A0A0L4M1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.4e-24
Identity = 68/84 (80.95%), Postives = 71/84 (84.52%), Query Frame = 0 

Query: 3  CRLKL-SFWVVVLILLLCSFNSESRLLSS-----SPSPSSNKKNELFVKNVEEMLKFIME 62
          C +KL  FW +VLILLLCS  SESRLLSS     SPS SSNKKNELFVKN EEMLKFI+E
Sbjct: 4  CSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIE 63

Query: 63 EKEKLGRHFVSKRLSPGGPDPRHH 81
          EKEKLGRHFVSKRLSPGGPDPRHH
Sbjct: 64 EKEKLGRHFVSKRLSPGGPDPRHH 87

[Close]
BLAST of Bhi09M002857 vs. ExPASy TrEMBL
Match: A0A6A1V0K5 (CLAVATA3/ESR (CLE)-related protein 1 OS=Morella rubra OX=262757 GN=CJ030_MR7G014318 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-04
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 0 

Query: 7  LSFWVVVLILLLCSFNSESRLLSSSPSPSSNKKNELFVKNVEEMLKFIMEEKEKLGR-HF 66
          L FW+ + + ++ S +SESR   S PSP  NK N +  +   E+LK  ME   ++GR +F
Sbjct: 4  LKFWLCLFLAIVGSSSSESR---SRPSPLVNKSNRVLTEIANEVLKASME--RRVGRSNF 63

Query: 67 VSKRLSPGGPDPRHH 81
           +KR+ PGGPDP+HH
Sbjct: 64 ETKRMIPGGPDPQHH 73

The following BLAST results are available for this feature:
BLAST of Bhi09M002857 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi09M002857 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A0A072V9Z01.5e-0438.75CLAVATA3/ESR (CLE)-related protein 33 OS=Medicago truncatula OX=3880 GN=CLE33 PE... [more]
BLAST of Bhi09M002857 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4M12.4e-2480.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1[more]
A0A6A1V0K51.2e-0444.00CLAVATA3/ESR (CLE)-related protein 1 OS=Morella rubra OX=262757 GN=CJ030_MR7G014... [more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi09G002857Bhi09G002857gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi09M002857.utr5p1Bhi09M002857.utr5p1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi09M002857.exon1Bhi09M002857.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi09M002857cds.Bhi09M002857CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi09M002857.utr3p1Bhi09M002857.utr3p1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi09M002857Bhi09M002857-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment
molecular_function GO:0033612 receptor serine/threonine kinase binding