Bhi09M002816 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi09M002816
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Squamosa promoter-binding protein
Location	chr9: 87051657 .. 87054377 (+)
Sequence length	2617
RNA-Seq Expression	Bhi09M002816
Synteny	Bhi09M002816

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGTCATTCACTGTTCCATCACCCAAACTGGCACTCACAAAGAAAAAAAACTGTGGTCCTCACCACTTTTTTCCTTTCCCACCTTTTTCCTTGCAATCTCATAGTCTTGATGTAACTTCTAAGTTCCTATATTTTTGCTCCCACCATTTCCACAAGCAGCATCAACACCACCACCATCGCTACCGAGCTGCCGGAGTTGGCAATGGAAGCAAAGAGCATTGAAGGGAAGCATAATTTCAAAGATAAGACGTGCAGGGAAGGCATGGTCGATGACGATTTAGAATACGAGACGGAGGAAGAGGTTGGCGGAGCTGGCCATGGTGGTAGCAATGCTTGCACTGCATTGGGTTATTTTGAGAATGAGAAAAAGAAACGAGGGGCAGCAGTTTCTGGCCGGGGAAGGTCCGGTGGATGCGTCTCTTCGCCGAGTTGCCAAGCGCACAACTGTGCAACAGATTTGAGTGAAGCAAAGAGGTATCACCGCCGCCACAAGGTCTGCGAGCTTCACTCAAAGGCAGCGGTCGTCATGGTTGCGGGAATTCGCCAGCGTTTCTGTCAGCAATGCAGCAGGTATTTGACCCTCCTTAACAATATCAAGGATAACTTCTATTAACATTCTTTCCTCTTTCTGTTTAGCAATGGTAACATGTTTGTTGTTGGTGAGTGATGATCAGGTTCCATGAGTTAACAGAATTTGATGAAGCAAAAAGGAGCTGTCGGCGTAGGCTGGCAGGACACAACGAACGTCGCCGGAAGAGCTCGGCAGAATGCCAAGGGGAAAGCACGAGCCGCAAAGGATCAACCCCGCAGTCGAAGGAAAGCCATTGCAGGCAGCTGGTGGAAGATCAAAGAAGCAGAATTCAGATAGCTCCTCCAGGAAGTTCTGGCTATAAACACCTGCATATCAGATAAAAGGAGACTAAACTAGCTACGAATCTTTGCTCTCTCTCTTCTGTCACTAGGAAATGAAAGACATCCACAAAATGCCACGTTTTCCTTGAAGTTGGCTCAACATCTCAGTTTGGTGCTTTGTTTTTTTCTGTCTTAATTTTTAAATAATGTGGACTGGTTTGTTCTTGTTTTGTGGTCCCTTGTCTATGTACTAAAATATTTCATCCTCTGGCTGTAAAATCTAATATACAAAGCTTTATTTTTAAGGGACTTCAAAACCCTTAATTGAGAAAGGGACTAAAATGAACAGATTTGTGGTAGATCATCAAACTGAAGTTCAGAAGATTTAACATCAATGGCAGAGAAGCATTTGATACAGCCACACAGGAATATATATAAGTTAATGTTTCGACTAAAATCCACAACTATATTTATTTGGATTCCCGATACATCAAAGAGAGAACAAGGGAGCTTTGGAACTAGTTCTTTATGTCCTTCCATTTTTCAGTTGTTGGGACACAACTAGAAATCCATGATGAACTCAGTGAAATCTCACAACTATACAAGAGATATCATCTTTGCTCTTCCTCTTGAGCGCCTCCTCTGTCAGGTGTTTGGCAGCTGCATGGGCATCTTTTATATGCCTGATCGACTCTACGGCGTCTTCATTTGTCATAACCTGAAATCGCATATTAAACTTCTAATCGGATAAAGCTTGGGAAAGAAGAAAAAATGATATTTCCCAGTCTCAGTGTAGTTAAAGATATCAGAAGAACTAGCAAGTCAGTCTGCTATGCTAGTGTTCCATAAATATTTTCATAAGATCCACACCAACCTTCCACAATCCATCACTTGCCAAGATAACAAATTCAGTCTCGTCGTCTATCGTCTCCACAACCACATAAGGCTCTGAACTCAAATGTTTCTTTAAGCTCCTATCACCAAATGCCCTTGCCACCGCTAACTGCCCATCAACACGTGGAACATCTCCTGGATTTGTTCAGAATATGGATGTTGTCATTTTAATGGATAAAGAGATTTTAGAACTATCCAATACAATTTTCAAAAACCACAGCAATACTAGTGAGCATTTTTGCTAAATGAATTTGGGAACGAATGAGCAAAGTTTAACCTGTATCAGCTTAAGATCCTTCACTTCAAACTTACCGGGAAAGTTTGATACAAAACCACCTCTGTCCTCGATGCTTTTTCTTTCAGTGCTCGGCTCATGATCAATTGATAATTGTCTGGCCTTTCCGTTACAACAGATAACGGCACGGGAGTCCCCCACATTCCCCACTACTAGTGTCTTACAGTCAATCAATATGGCCGTGACAGCAGTTGAACCCCCATGACTAAAGTCAACAGCTTTTTCTAAAATGTAAGCATCTGTTTCCTCGTATGCTTTTCTGACTGCATTCTTTGGATCGGTCCAGAAATCAGGCTGTTTGGGCATACAATAAGATTAATTAATTAATTAATTAATTAACAAAACTATATCAACAATATTCATAACGGATAAAAGCAGGGAAATACTGTCAAAAGGGGAAGAAAGAACAAGCCATTGCACCTCATTTATTATATTAGAAAATAAATGTGACTGCAAATAATCAGGAATAGTATTGCTCAAATGGCCATCAAAGATAGCAAATAAACCAAGCTCATGATGATCAACTTGCTTAAACTCTGCAACCAGATAATCTTCCATTGCATGATTTGATTTCCCTTCCACCAAGTGAAAACCATGTGTGACATGCTTGGACATCTTGCTCTTTCCTTTTCCTGAGTCTGGATCCGACGAACACAACCCAACTTTTTCCTGAAACAAAC

mRNA sequence

CTGTCATTCACTGTTCCATCACCCAAACTGGCACTCACAAAGAAAAAAAACTGTGGTCCTCACCACTTTTTTCCTTTCCCACCTTTTTCCTTGCAATCTCATAGTCTTGATGTAACTTCTAAGTTCCTATATTTTTGCTCCCACCATTTCCACAAGCAGCATCAACACCACCACCATCGCTACCGAGCTGCCGGAGTTGGCAATGGAAGCAAAGAGCATTGAAGGGAAGCATAATTTCAAAGATAAGACGTGCAGGGAAGGCATGGTCGATGACGATTTAGAATACGAGACGGAGGAAGAGGTTGGCGGAGCTGGCCATGGTGGTAGCAATGCTTGCACTGCATTGGGTTATTTTGAGAATGAGAAAAAGAAACGAGGGGCAGCAGTTTCTGGCCGGGGAAGGTCCGGTGGATGCGTCTCTTCGCCGAGTTGCCAAGCGCACAACTGTGCAACAGATTTGAGTGAAGCAAAGAGGTATCACCGCCGCCACAAGGTCTGCGAGCTTCACTCAAAGGCAGCGGTCGTCATGGTTGCGGGAATTCGCCAGCGTTTCTGTCAGCAATGCAGCAGGTTCCATGAGTTAACAGAATTTGATGAAGCAAAAAGGAGCTGTCGGCGTAGGCTGGCAGGACACAACGAACGTCGCCGGAAGAGCTCGGCAGAATGCCAAGGGGAAAGCACGAGCCGCAAAGGATCAACCCCGCAGTCGAAGGAAAGCCATTGCAGGCAGCTGGTGGAAGATCAAAGAAGCAGAATTCAGATAGCTCCTCCAGGAAGTTCTGGCTATAAACACCTGCATATCAGATAAAAGGAGACTAAACTAGCTACGAATCTTTGCTCTCTCTCTTCTGTCACTAGGAAATGAAAGACATCCACAAAATGCCACGTTTTCCTTGAAGTTGGCTCAACATCTCAGTTTGGTGCTTTGTTTTTTTCTGTCTTAATTTTTAAATAATGTGGACTGGTTTGTTCTTGTTTTGTGGTCCCTTGTCTATGTACTAAAATATTTCATCCTCTGGCTGTAAAATCTAATATACAAAGCTTTATTTTTAAGGGACTTCAAAACCCTTAATTGAGAAAGGGACTAAAATGAACAGATTTGTGGTAGATCATCAAACTGAAGTTCAGAAGATTTAACATCAATGGCAGAGAAGCATTTGATACAGCCACACAGGAATATATATAAGTTAATGTTTCGACTAAAATCCACAACTATATTTATTTGGATTCCCGATACATCAAAGAGAGAACAAGGGAGCTTTGGAACTAGTTCTTTATGTCCTTCCATTTTTCAGTTGTTGGGACACAACTAGAAATCCATGATGAACTCAGTGAAATCTCACAACTATACAAGAGATATCATCTTTGCTCTTCCTCTTGAGCGCCTCCTCTGTCAGGTGTTTGGCAGCTGCATGGGCATCTTTTATATGCCTGATCGACTCTACGGCGTCTTCATTTGTCATAACCTGAAATCGCATATTAAACTTCTAATCGGATAAAGCTTGGGAAAGAAGAAAAAATGATATTTCCCAGTCTCAGTGTAGTTAAAGATATCAGAAGAACTAGCAAGTCAGTCTGCTATGCTAGTGTTCCATAAATATTTTCATAAGATCCACACCAACCTTCCACAATCCATCACTTGCCAAGATAACAAATTCAGTCTCGTCGTCTATCGTCTCCACAACCACATAAGGCTCTGAACTCAAATGTTTCTTTAAGCTCCTATCACCAAATGCCCTTGCCACCGCTAACTGCCCATCAACACGTGGAACATCTCCTGGATTTGTTCAGAATATGGATGTTGTCATTTTAATGGATAAAGAGATTTTAGAACTATCCAATACAATTTTCAAAAACCACAGCAATACTAGTGAGCATTTTTGCTAAATGAATTTGGGAACGAATGAGCAAAGTTTAACCTGTATCAGCTTAAGATCCTTCACTTCAAACTTACCGGGAAAGTTTGATACAAAACCACCTCTGTCCTCGATGCTTTTTCTTTCAGTGCTCGGCTCATGATCAATTGATAATTGTCTGGCCTTTCCGTTACAACAGATAACGGCACGGGAGTCCCCCACATTCCCCACTACTAGTGTCTTACAGTCAATCAATATGGCCGTGACAGCAGTTGAACCCCCATGACTAAAGTCAACAGCTTTTTCTAAAATGTAAGCATCTGTTTCCTCGTATGCTTTTCTGACTGCATTCTTTGGATCGGTCCAGAAATCAGGCTGTTTGGGCATACAATAAGATTAATTAATTAATTAATTAATTAACAAAACTATATCAACAATATTCATAACGGATAAAAGCAGGGAAATACTGTCAAAAGGGGAAGAAAGAACAAGCCATTGCACCTCATTTATTATATTAGAAAATAAATGTGACTGCAAATAATCAGGAATAGTATTGCTCAAATGGCCATCAAAGATAGCAAATAAACCAAGCTCATGATGATCAACTTGCTTAAACTCTGCAACCAGATAATCTTCCATTGCATGATTTGATTTCCCTTCCACCAAGTGAAAACCATGTGTGACATGCTTGGACATCTTGCTCTTTCCTTTTCCTGAGTCTGGATCCGACGAACACAACCCAACTTTTTCCTGAAACAAAC

Coding sequence (CDS)

ATGGAAGCAAAGAGCATTGAAGGGAAGCATAATTTCAAAGATAAGACGTGCAGGGAAGGCATGGTCGATGACGATTTAGAATACGAGACGGAGGAAGAGGTTGGCGGAGCTGGCCATGGTGGTAGCAATGCTTGCACTGCATTGGGTTATTTTGAGAATGAGAAAAAGAAACGAGGGGCAGCAGTTTCTGGCCGGGGAAGGTCCGGTGGATGCGTCTCTTCGCCGAGTTGCCAAGCGCACAACTGTGCAACAGATTTGAGTGAAGCAAAGAGGTATCACCGCCGCCACAAGGTCTGCGAGCTTCACTCAAAGGCAGCGGTCGTCATGGTTGCGGGAATTCGCCAGCGTTTCTGTCAGCAATGCAGCAGGTTCCATGAGTTAACAGAATTTGATGAAGCAAAAAGGAGCTGTCGGCGTAGGCTGGCAGGACACAACGAACGTCGCCGGAAGAGCTCGGCAGAATGCCAAGGGGAAAGCACGAGCCGCAAAGGATCAACCCCGCAGTCGAAGGAAAGCCATTGCAGGCAGCTGGTGGAAGATCAAAGAAGCAGAATTCAGATAGCTCCTCCAGGAAGTTCTGGCTATAAACACCTGCATATCAGATAA

Protein sequence

MEAKSIEGKHNFKDKTCREGMVDDDLEYETEEEVGGAGHGGSNACTALGYFENEKKKRGAAVSGRGRSGGCVSSPSCQAHNCATDLSEAKRYHRRHKVCELHSKAAVVMVAGIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSTPQSKESHCRQLVEDQRSRIQIAPPGSSGYKHLHIR

Homology

[Close]

BLAST of Bhi09M002816 vs. TAIR 10
Match: AT3G15270.1 (squamosa promoter binding protein-like 5 )

HSP 1 Score: 142.9 bits (359), Expect = 2.8e-34
Identity = 88/203 (43.35%), Postives = 119/203 (58.62%), Query Frame = 0


Query: 1   MEAKSIEGKHNFKDKTCREGMVDDDLE--YETEEEVGGAGHGGSNACTALGYFENEKKKR 60
           ME +  + +   KDK     +V++++E   + EEE GG                +E K++
Sbjct: 1   MEGQRTQRRGYLKDKATVSNLVEEEMENGMDGEEEDGG----------------DEDKRK 60

Query: 61  GAAVSGRGRSGGCVSSPSCQAHNCATDLSEAKRYHRRHKVCELHSKAAVVMVAGIRQRFC 120
                 RG S   V S  CQ   C  +L+EAK+Y+RRH+VCE+H+KA+   VAG+RQRFC
Sbjct: 61  KVMERVRGPSTDRVPSRLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFC 120

Query: 121 QQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSTPQSKESHCRQLV 180
           QQCSRFHEL EFDEAKRSCRRRLAGHNERRRK S +  GE + R+G + Q  ++  R  V
Sbjct: 121 QQCSRFHELPEFDEAKRSCRRRLAGHNERRRKISGDSFGEGSGRRGFSGQLIQTQERNRV 180

Query: 181 EDQRSRIQIAPPGSSGYKHLHIR 202
           + +       P  +S +K   IR
Sbjct: 181 DRK------LPMTNSSFKRPQIR 181

[Close]

BLAST of Bhi09M002816 vs. TAIR 10
Match: AT1G53160.2 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 137.9 bits (346), Expect = 9.0e-33
Identity = 88/203 (43.35%), Postives = 115/203 (56.65%), Query Frame = 0


Query: 1   MEAKSIEGKHNFKDKTCREGMVDDDLEYETEEEVGGAGHGGSNACTALGYFENEKKKRGA 60
           ME K  +G+   K K+    +V++D+E +T+EE                    E+  R  
Sbjct: 1   MEGKRSQGQGYMKKKSY---LVEEDMETDTDEE--------------------EEVGRDR 60

Query: 61  AVSGRGRSGGCVSSPSCQAHNCATDLSEAKRYHRRHKVCELHSKAAVVMVAGIRQRFCQQ 120
               RG      S   CQ   C  D+ EAK YHRRHKVCE+H+KA+ V ++G+ QRFCQQ
Sbjct: 61  VRGSRGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQ 120

Query: 121 CSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAE-CQGESTSRKGSTPQSKESHCRQLVE 180
           CSRFH+L EFDEAKRSCRRRLAGHNERRRKSS E   GE + R+G   Q        +  
Sbjct: 121 CSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGESTYGEGSGRRGINGQV------VMQN 174

Query: 181 DQRSRIQIA-PPGSSGYKHLHIR 202
            +RSR+++  P  +S +K   IR
Sbjct: 181 QERSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of Bhi09M002816 vs. TAIR 10
Match: AT1G53160.1 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 137.9 bits (346), Expect = 9.0e-33
Identity = 88/203 (43.35%), Postives = 115/203 (56.65%), Query Frame = 0


Query: 1   MEAKSIEGKHNFKDKTCREGMVDDDLEYETEEEVGGAGHGGSNACTALGYFENEKKKRGA 60
           ME K  +G+   K K+    +V++D+E +T+EE                    E+  R  
Sbjct: 1   MEGKRSQGQGYMKKKSY---LVEEDMETDTDEE--------------------EEVGRDR 60

Query: 61  AVSGRGRSGGCVSSPSCQAHNCATDLSEAKRYHRRHKVCELHSKAAVVMVAGIRQRFCQQ 120
               RG      S   CQ   C  D+ EAK YHRRHKVCE+H+KA+ V ++G+ QRFCQQ
Sbjct: 61  VRGSRGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQ 120

Query: 121 CSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAE-CQGESTSRKGSTPQSKESHCRQLVE 180
           CSRFH+L EFDEAKRSCRRRLAGHNERRRKSS E   GE + R+G   Q        +  
Sbjct: 121 CSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGESTYGEGSGRRGINGQV------VMQN 174

Query: 181 DQRSRIQIA-PPGSSGYKHLHIR 202
            +RSR+++  P  +S +K   IR
Sbjct: 181 QERSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of Bhi09M002816 vs. TAIR 10
Match: AT2G33810.1 (squamosa promoter binding protein-like 3 )

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-29
Identity = 75/158 (47.47%), Postives = 96/158 (60.76%), Query Frame = 0


Query: 1   MEAKSIEGKHNFKDKTCREGMVDDDLEYETEEEVGGAGHGGSNACTALGYFEN----EKK 60
           M     EGK     ++ RE   +++ E ETE+E                 FE     EKK
Sbjct: 3   MRRSKAEGK-----RSLRELSEEEEEEEETEDE---------------DTFEEEEALEKK 62

Query: 61  KRGAAVSGRGRSGGCVSSPSCQAHNCATDLSEAKRYHRRHKVCELHSKAAVVMVAGIRQR 120
           ++G A S         SS  CQ  +C  D+S+AK+YH+RHKVC+ H+KA  V ++G+ QR
Sbjct: 63  QKGKATS---------SSGVCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQR 122

Query: 121 FCQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAE 155
           FCQQCSRFH L+EFDEAKRSCRRRLAGHNERRRKS+ +
Sbjct: 123 FCQQCSRFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

[Close]

BLAST of Bhi09M002816 vs. TAIR 10
Match: AT1G69170.1 (Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein )

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-28
Identity = 62/105 (59.05%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 48  LGYFENEKKKRGAAV-SGRGRSGG-CVSSPSCQAHNCATDLSEAKRYHRRHKVCELHSKA 107
           LG  +++   RG A+ S + R+   C  +P CQ + C+ DLS +K YH+RH+VCE HSK 
Sbjct: 93  LGNDDDDTSSRGFALPSKKSRASNLCSQNPLCQVYGCSKDLSSSKDYHKRHRVCEAHSKT 152

Query: 108 AVVMVAGIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNERRRK 151
           +VV+V G+ QRFCQQCSRFH L+EFD+ KRSCRRRLAGHNERRRK
Sbjct: 153 SVVIVNGLEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRK 197

[Close]

BLAST of Bhi09M002816 vs. ExPASy Swiss-Prot
Match: Q6Z461 (Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL13 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-33
Identity = 76/127 (59.84%), Postives = 87/127 (68.50%), Query Frame = 0


Query: 35  GGAGHGGSNACTALGYFENEKK-------KRGAAVSGRGRSGGCVSSPSCQAHNCATDLS 94
           GG G   S+A  A G   +          +RGA  +G G   G    P CQ   C  DLS
Sbjct: 61  GGGGGSSSSAAVAAGASSSSSSSSVAAAARRGAGRAGGGAPSGGGGGPRCQVERCGVDLS 120

Query: 95  EAKRYHRRHKVCELHSKAAVVMVAGIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNER 154
           EA RY+RRHKVC+ HSK  VV+VAG+RQRFCQQCSRFHELTEFD+AKRSCRRRLAGHNER
Sbjct: 121 EAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNER 180

[Close]

BLAST of Bhi09M002816 vs. ExPASy Swiss-Prot
Match: Q9S758 (Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.0e-33
Identity = 88/203 (43.35%), Postives = 119/203 (58.62%), Query Frame = 0


Query: 1   MEAKSIEGKHNFKDKTCREGMVDDDLE--YETEEEVGGAGHGGSNACTALGYFENEKKKR 60
           ME +  + +   KDK     +V++++E   + EEE GG                +E K++
Sbjct: 1   MEGQRTQRRGYLKDKATVSNLVEEEMENGMDGEEEDGG----------------DEDKRK 60

Query: 61  GAAVSGRGRSGGCVSSPSCQAHNCATDLSEAKRYHRRHKVCELHSKAAVVMVAGIRQRFC 120
                 RG S   V S  CQ   C  +L+EAK+Y+RRH+VCE+H+KA+   VAG+RQRFC
Sbjct: 61  KVMERVRGPSTDRVPSRLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFC 120

Query: 121 QQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSTPQSKESHCRQLV 180
           QQCSRFHEL EFDEAKRSCRRRLAGHNERRRK S +  GE + R+G + Q  ++  R  V
Sbjct: 121 QQCSRFHELPEFDEAKRSCRRRLAGHNERRRKISGDSFGEGSGRRGFSGQLIQTQERNRV 180

Query: 181 EDQRSRIQIAPPGSSGYKHLHIR 202
           + +       P  +S +K   IR
Sbjct: 181 DRK------LPMTNSSFKRPQIR 181

[Close]

BLAST of Bhi09M002816 vs. ExPASy Swiss-Prot
Match: Q9S7A9 (Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=SPL4 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-31
Identity = 88/203 (43.35%), Postives = 115/203 (56.65%), Query Frame = 0


Query: 1   MEAKSIEGKHNFKDKTCREGMVDDDLEYETEEEVGGAGHGGSNACTALGYFENEKKKRGA 60
           ME K  +G+   K K+    +V++D+E +T+EE                    E+  R  
Sbjct: 1   MEGKRSQGQGYMKKKSY---LVEEDMETDTDEE--------------------EEVGRDR 60

Query: 61  AVSGRGRSGGCVSSPSCQAHNCATDLSEAKRYHRRHKVCELHSKAAVVMVAGIRQRFCQQ 120
               RG      S   CQ   C  D+ EAK YHRRHKVCE+H+KA+ V ++G+ QRFCQQ
Sbjct: 61  VRGSRGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQ 120

Query: 121 CSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAE-CQGESTSRKGSTPQSKESHCRQLVE 180
           CSRFH+L EFDEAKRSCRRRLAGHNERRRKSS E   GE + R+G   Q        +  
Sbjct: 121 CSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGESTYGEGSGRRGINGQV------VMQN 174

Query: 181 DQRSRIQIA-PPGSSGYKHLHIR 202
            +RSR+++  P  +S +K   IR
Sbjct: 181 QERSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of Bhi09M002816 vs. ExPASy Swiss-Prot
Match: Q38741 (Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.8e-31
Identity = 68/101 (67.33%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 52  ENEKKKRGAAVSGRGRSGGCVSSPSCQAHNCATDLSEAKRYHRRHKVCELHSKAAVVMVA 111
           E+ KK R    SG+  SG   +  SCQ  NCA +++ AK YHRRHKVCE H+KA VV+ +
Sbjct: 29  EDSKKTRALTPSGKRASGS--TQRSCQVENCAAEMTNAKPYHRRHKVCEFHAKAPVVLHS 88

Query: 112 GIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSS 153
           G++QRFCQQCSRFHEL+EFDEAKRSCRRRLAGHNERRRKSS
Sbjct: 89  GLQQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSS 127

[Close]

BLAST of Bhi09M002816 vs. ExPASy Swiss-Prot
Match: Q38740 (Squamosa promoter-binding protein 2 OS=Antirrhinum majus OX=4151 GN=SBP2 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-28
Identity = 70/149 (46.98%), Postives = 90/149 (60.40%), Query Frame = 0


Query: 23  DDDLEYETEEEVGGAGHGGSNACTALGYFENEKKKR----GAAVSGR------GRSGGCV 82
           D+  ++E EEE              + + E++ KK+    G    G+         GG V
Sbjct: 21  DEGSDFEEEEEGEDEEEEEQERVVKVNFAESQLKKKKLNLGEGSGGKSGEKHTASGGGVV 80

Query: 83  SSPSCQAHNCATDLSEAKRYHRRHKVCELHSKAAVVMVAGIRQRFCQQCSRFHELTEFDE 142
           + P C   NC  DL   K+Y++RH+VCE+H+KA VV V G+ QRFCQQCSRFH+L+EFD+
Sbjct: 81  AQPCCLVENCGADLRNCKKYYQRHRVCEVHAKAPVVSVEGLMQRFCQQCSRFHDLSEFDQ 140

Query: 143 AKRSCRRRLAGHNERRRKSSAECQGESTS 162
            KRSCRRRLAGHNERRRKSS E   E  S
Sbjct: 141 TKRSCRRRLAGHNERRRKSSLESHKEGRS 169

[Close]

BLAST of Bhi09M002816 vs. ExPASy TrEMBL
Match: A0A6J1FEY0 (squamosa promoter-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111443461 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.8e-95
Identity = 178/202 (88.12%), Postives = 187/202 (92.57%), Query Frame = 0


Query: 1   MEAKSIEGKHNFKDKTCREGMVDDDLEYETEEE-VGGAGHGGSNACTALGYFENEKKKRG 60
           MEAKS EGKHN KDK  +EG++DDDLEYETEEE VGG GHGG+NACTALGY+ENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 61  AAVSGRGRSGGCVSSPSCQAHNCATDLSEAKRYHRRHKVCELHSKAAVVMVAGIRQRFCQ 120
            +VSGRGRSG  VSSPSCQAHNC TDLSEAKRYHRRHKVCE HSKAAVVMVAGIRQRFCQ
Sbjct: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSTPQSKESHCRQLVE 180
           QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGEST+RKGS  QSKE HCRQL+E
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 180

Query: 181 DQRSRIQIAPPGSSGYKHLHIR 202
           DQRSRIQ+AP GSSGYKHLHIR
Sbjct: 181 DQRSRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of Bhi09M002816 vs. ExPASy TrEMBL
Match: A0A6J1IJV6 (squamosa promoter-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111476934 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.1e-93
Identity = 177/202 (87.62%), Postives = 185/202 (91.58%), Query Frame = 0


Query: 1   MEAKSIEGKHNFKDKTCREGMVDDDLEYETEEE-VGGAGHGGSNACTALGYFENEKKKRG 60
           MEAKS EGKHN KDK  REG+VDDDLEYETEEE VGG GHGG+NACTALGY+ENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYREGVVDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 61  AAVSGRGRSGGCVSSPSCQAHNCATDLSEAKRYHRRHKVCELHSKAAVVMVAGIRQRFCQ 120
            AVSGRGRSG  VSSPSCQAHNC TDLSEAKRYHRRHKVCE HSKAAVVMVAGIRQRFCQ
Sbjct: 61  TAVSGRGRSGVGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSTPQSKESHCRQLVE 180
           QCSRFHELTEFDEAKRSCRRRLAGHNERRRK+SAECQGEST+RKG   QSKE  CRQL+E
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKNSAECQGESTNRKGPASQSKEGQCRQLME 180

Query: 181 DQRSRIQIAPPGSSGYKHLHIR 202
           DQR+RIQ+AP GSSGYKHLHIR
Sbjct: 181 DQRTRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of Bhi09M002816 vs. ExPASy TrEMBL
Match: A0A0A0L3D9 (Squamosa promoter-binding protein OS=Cucumis sativus OX=3659 GN=Csa_4G631590 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 7.4e-91
Identity = 180/206 (87.38%), Postives = 186/206 (90.29%), Query Frame = 0


Query: 1   MEAKSIEGKHNFKDKTCREGMVDDDLEYET-EEEVGGAGHGG--SNACTALGYFENEKKK 60
           M+AKS EGKHNFKDKT    +VDDD EYET EEEVGG G GG  SNAC ALGYF+NEKKK
Sbjct: 1   MDAKSFEGKHNFKDKT----VVDDDFEYETEEEEVGGGGGGGSNSNACNALGYFDNEKKK 60

Query: 61  RGAAVSGRGRSGGCVSSPSCQAHNCATDLSEAKRYHRRHKVCELHSKAAVVMVAGIRQRF 120
           RGAAVSGRG+SGG VS PSCQAHNCA DLSEAKRYHRRHKVCE HSKAA+VMVAGIRQRF
Sbjct: 61  RGAAVSGRGKSGGSVSLPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRF 120

Query: 121 CQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSTP--QSKESHCR 180
           CQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAE QGESTSRKGS P  QSKESHCR
Sbjct: 121 CQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAESQGESTSRKGSAPQAQSKESHCR 180

Query: 181 QLVEDQRSRIQIAPPGSSGYKHLHIR 202
           QLVEDQRSRIQ+APPGSSGYKHLHIR
Sbjct: 181 QLVEDQRSRIQMAPPGSSGYKHLHIR 202

[Close]

BLAST of Bhi09M002816 vs. ExPASy TrEMBL
Match: A0A5D3DWS3 (Squamosa promoter-binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001760 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.3e-87
Identity = 173/204 (84.80%), Postives = 182/204 (89.22%), Query Frame = 0


Query: 1   MEAKSIEGKHNFKDKTCREGMVDDDLEYETEEEVGGAGHGG--SNACTALGYFENEKKKR 60
           M+AKS EGKHN KDKT    +VDDD EYETEEE  G G GG  SNAC ALGYF+NEK+KR
Sbjct: 1   MDAKSFEGKHNSKDKT----VVDDDFEYETEEEEVGGGGGGSNSNACNALGYFDNEKRKR 60

Query: 61  GAAVSGRGRSGGCVSSPSCQAHNCATDLSEAKRYHRRHKVCELHSKAAVVMVAGIRQRFC 120
           GAAVSGRG+SGG VSSPSCQAHNCA DLSEAKRYHRRHKVCE HSKAA+VMVAGIRQRFC
Sbjct: 61  GAAVSGRGKSGGSVSSPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRFC 120

Query: 121 QQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGS-TPQSKESHCRQL 180
           QQCSRFHELTEFDEAKRSCRRRLAGHNERRRK+SAE QGESTSRK +   QSKESHCRQL
Sbjct: 121 QQCSRFHELTEFDEAKRSCRRRLAGHNERRRKNSAESQGESTSRKSAPQAQSKESHCRQL 180

Query: 181 VEDQRSRIQIAPPGSSGYKHLHIR 202
           VEDQRSRIQ+APPGSSGYKHLHIR
Sbjct: 181 VEDQRSRIQMAPPGSSGYKHLHIR 200

[Close]

BLAST of Bhi09M002816 vs. ExPASy TrEMBL
Match: A0A1S4E4C7 (squamosa promoter-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501851 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.5e-77
Identity = 159/202 (78.71%), Postives = 169/202 (83.66%), Query Frame = 0


Query: 1   MEAKSIEGKHNFKDKTCREGMVDDDLEYETEEEVGGAGHGGSNACTALGYFENEKKKRGA 60
           M+AKS EGKHN KDKT    +VDDD EYETEEE  G G G              +K++GA
Sbjct: 1   MDAKSFEGKHNSKDKT----VVDDDFEYETEEEEVGGGGG--------------EKEKGA 60

Query: 61  AVSGRGRSGGCVSSPSCQAHNCATDLSEAKRYHRRHKVCELHSKAAVVMVAGIRQRFCQQ 120
           AVSGRG+SGG VSSPSCQAHNCA DLSEAKRYHRRHKVCE HSKAA+VMVAGIRQRFCQQ
Sbjct: 61  AVSGRGKSGGSVSSPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRFCQQ 120

Query: 121 CSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGS-TPQSKESHCRQLVE 180
           CSRFHELTEFDEAKRSCRRRLAGHNERRRK+SAE QGESTSRK +   QSKESHCRQLVE
Sbjct: 121 CSRFHELTEFDEAKRSCRRRLAGHNERRRKNSAESQGESTSRKSAPQAQSKESHCRQLVE 180

Query: 181 DQRSRIQIAPPGSSGYKHLHIR 202
           DQRSRIQ+APPGSSGYKHLHIR
Sbjct: 181 DQRSRIQMAPPGSSGYKHLHIR 184

The following BLAST results are available for this feature:

BLAST of Bhi09M002816 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15270.1	2.8e-34	43.35	squamosa promoter binding protein-like 5	[more]
AT1G53160.2	9.0e-33	43.35	squamosa promoter binding protein-like 4	[more]
AT1G53160.1	9.0e-33	43.35	squamosa promoter binding protein-like 4	[more]
AT2G33810.1	1.6e-29	47.47	squamosa promoter binding protein-like 3	[more]
AT1G69170.1	1.0e-28	59.05	Squamosa promoter-binding protein-like (SBP domain) transcription factor family ...	[more]

BLAST of Bhi09M002816 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6Z461	1.4e-33	59.84	Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica OX=399...	[more]
Q9S758	4.0e-33	43.35	Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5...	[more]
Q9S7A9	1.3e-31	43.35	Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=SPL4...	[more]
Q38741	4.8e-31	67.33	Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV...	[more]
Q38740	1.3e-28	46.98	Squamosa promoter-binding protein 2 OS=Antirrhinum majus OX=4151 GN=SBP2 PE=2 SV...	[more]

BLAST of Bhi09M002816 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEY0	3.8e-95	88.12	squamosa promoter-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1IJV6	2.1e-93	87.62	squamosa promoter-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A0A0L3D9	7.4e-91	87.38	Squamosa promoter-binding protein OS=Cucumis sativus OX=3659 GN=Csa_4G631590 PE=...	[more]
A0A5D3DWS3	1.3e-87	84.80	Squamosa promoter-binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S4E4C7	3.5e-77	78.71	squamosa promoter-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501851...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004333	SBP domain	PFAM	PF03110	SBP	coord: 77..150 e-value: 2.0E-31 score: 108.1
IPR004333	SBP domain	PROSITE	PS51141	ZF_SBP	coord: 74..151 score: 32.231155
IPR036893	SBP domain superfamily	GENE3D	4.10.1100.10		coord: 72..138 e-value: 3.0E-32 score: 112.6
IPR036893	SBP domain superfamily	SUPERFAMILY	103612	SBT domain	coord: 75..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..172
None	No IPR available	PANTHER	PTHR31251:SF149	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN	coord: 8..201
IPR044817	Squamosa promoter-binding-like protein	PANTHER	PTHR31251	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	coord: 8..201

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi09G002816	Bhi09G002816	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi09M002816.utr5p1	Bhi09M002816.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi09M002816.exon1	Bhi09M002816.exon1	exon
Bhi09M002816.exon2	Bhi09M002816.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi09M002816	cds.Bhi09M002816	CDS
cds.Bhi09M002816	cds.Bhi09M002816_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi09M002816.utr3p1	Bhi09M002816.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi09M002816	Bhi09M002816-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding