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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCTGATGGTTTCTTTTCCTTCACACCATTTGATTTCAGTGGCTCACGAGCAGGAACTTTCTTCCCCTCTAATGGCGTCCACGAGAAACCGGAGACTGAGCACAGAGGCAAAGAAGACGATTGTCCATTTAGAATGGAGGAGTTTGGAGATTTCAACTTTCTCTCAGCTAATCAATCTGGCTTATACCAACAGGACATTCTCAAGATTGGAGATCAAACAAACTATCAACAGCCCAACTCAGATTGTCTTATTTTTGACGAATTGCTGTTTGACAACGATTTTACCATTTCCGAATTGATTCGGGAGAAGTCGAAGATATCGGAAAACCCGGCGGCATATTCTATCAGTTTGAACCCCAGTAAACAAGTTTCGAATCCACGTTTAGAATCTTTGCAGCTGCTAAACAGCTATGGTACCAAACAAAGTCAAGAGGAAGAAAGGGACAATTCTTAACAAAAAAGGCGGTAAAGCCAGTGTGAAGAGAACAGAACATTGTCAACTGAAGAGATATTAAGGGTAGCTGGAGCAAGATATGTTCATTTCTTCCCTGATGGTTATGATGACGTTTACATGCTGAGGCATCCGTGTGATTTCTCTATCTCCGGTCTGTTGAAGGATGAGAGAGAAGAAGTTGAGCTTGCCCATGTTCTCTTTGCTGCAGCTGAGAAAGTAGGCTAACAGCAATTTGATCGAGCGAGCCGGCTGCTTCAATGCCGTTAATGGGCTGCATCTGCCTACGGTAACGCAGTCCAGCAGCTCGTTTCTTACTTTGCGAAAGCACTTAGACAATTTCAAAAGAGAAACTGGACAGGAAGCAATTAAGGAGCAAAAAGAAGAGGAAATGAACCTTGAAGCACTTAAAGGATGCACGAAACTTTTCAGCAAGTGA mRNA sequence ATGGCTGATGGTTTCTTTTCCTTCACACCATTTGATTTCAGTGGCTCACGAGCAGGAACTTTCTTCCCCTCTAATGGCGTCCACGAGAAACCGGAGACTGAGCACAGAGGCAAAGAAGACGATTGTCCATTTAGAATGGAGGAGTTTGGAGATTTCAACTTTCTCTCAGCTAATCAATCTGGCTTATACCAACAGGACATTCTCAAGATTGGAGATCAAACAAACTATCAACAGCCCAACTCAGATTGTCTTATTTTTGACGAATTGCTGTTTGACAACGATTTTACCATTTCCGAATTGATTCGGGAGAAGTCGAAGATATCGGAAAACCCGGCGGCATATTCTATCAGTTTGAACCCCAGTAAACAAGTTTCGAATCCACGTTTAGAATCTTTGCAGCTGCTAAACAGCTATGAGATATTAAGGGTAGCTGGAGCAAGATATGTTCATTTCTTCCCTGATGGTTATGATGACGTTTACATGCTGAGGCATCCGTGTGATTTCTCTATCTCCGGTCTGTTGAAGGATGAGAGAGAAGAAGTTGAGCTTGCCCATGTTCTCTTTGCTGCAGCTGAGAAATCCAGCAGCTCGTTTCTTACTTTGCGAAAGCACTTAGACAATTTCAAAAGAGAAACTGGACAGGAAGCAATTAAGGAGCAAAAAGAAGAGGAAATGAACCTTGAAGCACTTAAAGGATGCACGAAACTTTTCAGCAAGTGA Coding sequence (CDS) ATGGCTGATGGTTTCTTTTCCTTCACACCATTTGATTTCAGTGGCTCACGAGCAGGAACTTTCTTCCCCTCTAATGGCGTCCACGAGAAACCGGAGACTGAGCACAGAGGCAAAGAAGACGATTGTCCATTTAGAATGGAGGAGTTTGGAGATTTCAACTTTCTCTCAGCTAATCAATCTGGCTTATACCAACAGGACATTCTCAAGATTGGAGATCAAACAAACTATCAACAGCCCAACTCAGATTGTCTTATTTTTGACGAATTGCTGTTTGACAACGATTTTACCATTTCCGAATTGATTCGGGAGAAGTCGAAGATATCGGAAAACCCGGCGGCATATTCTATCAGTTTGAACCCCAGTAAACAAGTTTCGAATCCACGTTTAGAATCTTTGCAGCTGCTAAACAGCTATGAGATATTAAGGGTAGCTGGAGCAAGATATGTTCATTTCTTCCCTGATGGTTATGATGACGTTTACATGCTGAGGCATCCGTGTGATTTCTCTATCTCCGGTCTGTTGAAGGATGAGAGAGAAGAAGTTGAGCTTGCCCATGTTCTCTTTGCTGCAGCTGAGAAATCCAGCAGCTCGTTTCTTACTTTGCGAAAGCACTTAGACAATTTCAAAAGAGAAACTGGACAGGAAGCAATTAAGGAGCAAAAAGAAGAGGAAATGAACCTTGAAGCACTTAAAGGATGCACGAAACTTTTCAGCAAGTGA Protein sequence MADGFFSFTPFDFSGSRAGTFFPSNGVHEKPETEHRGKEDDCPFRMEEFGDFNFLSANQSGLYQQDILKIGDQTNYQQPNSDCLIFDELLFDNDFTISELIREKSKISENPAAYSISLNPSKQVSNPRLESLQLLNSYEILRVAGARYVHFFPDGYDDVYMLRHPCDFSISGLLKDEREEVELAHVLFAAAEKSSSSFLTLRKHLDNFKRETGQEAIKEQKEEEMNLEALKGCTKLFSK
Homology
BLAST of Bhi09M000671 vs. ExPASy TrEMBL
Match: A0A0A0K9I9 (GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G407700 PE=3 SV=1) HSP 1 Score: 330.1 bits (845), Expect = 7.7e-87 Identity = 185/296 (62.50%), Postives = 208/296 (70.27%), Query Frame = 0
Query: 1 MADGFFSFTPFDFSGSRAGTFFPSN-GVHEKPETEHRGKEDDCPFRMEEFGDFNFLSANQ 60
MADGFFSFTPFDFSGS+ GTFFPSN GVHEK ETE RGKEDDCPFRM+EFGDFNF SANQ
Sbjct: 1 MADGFFSFTPFDFSGSQPGTFFPSNGGVHEKQETEQRGKEDDCPFRMDEFGDFNFPSANQ 60
Query: 61 SGLYQQDILKIGDQTNYQQPNSDCLIFDELLFDNDFTISELIREKSKISENPAAYSISLN 120
G YQQDI KIGDQTNY+ PN+DCLIFDELLF NDF ISELI+EKSKISE+ AA SIS N
Sbjct: 61 FGFYQQDISKIGDQTNYEHPNTDCLIFDELLFGNDFNISELIQEKSKISESLAADSISFN 120
Query: 121 PSKQVSNPRLESLQLLNSY-----------------------------EILRVAGARYVH 180
+KQVSNP L+SLQLLNSY EILRVAGARYVH
Sbjct: 121 SNKQVSNPCLDSLQLLNSYGTKVKRMNGENLNKRGDEVNEENKTLSTEEILRVAGARYVH 180
Query: 181 FFPDGYDDVYMLRHPCDFSISGLLKDEREEVELAHVLFAAAEK----------------- 237
FFP+G+DD YML HPCDF++SGL KDERE+VELAHVLFAAAEK
Sbjct: 181 FFPEGHDDFYMLTHPCDFALSGLSKDEREDVELAHVLFAAAEKVGYQQFDRGSRLLQRCE 240
BLAST of Bhi09M000671 vs. ExPASy TrEMBL
Match: A0A5A7TXT2 (DELLA protein RGL2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001730 PE=3 SV=1) HSP 1 Score: 324.3 bits (830), Expect = 4.2e-85 Identity = 184/296 (62.16%), Postives = 205/296 (69.26%), Query Frame = 0
Query: 1 MADGFFSFTPFDFSGSRAGTFFPSN-GVHEKPETEHRGKEDDCPFRMEEFGDFNFLSANQ 60
MADGFFSFTPFDFSGS+ TFFPSN GVHEK ETE RGKEDDCPFRM+EFGDFNF SANQ
Sbjct: 1 MADGFFSFTPFDFSGSQPETFFPSNGGVHEKQETEQRGKEDDCPFRMDEFGDFNFPSANQ 60
Query: 61 SGLYQQDILKIGDQTNYQQPNSDCLIFDELLFDNDFTISELIREKSKISENPAAYSISLN 120
G YQQDI KI DQTNYQ PNSDCLIFDELLF NDFTISELI+EKSKISEN +A SIS N
Sbjct: 61 FGFYQQDISKIVDQTNYQHPNSDCLIFDELLFGNDFTISELIQEKSKISENLSADSISFN 120
Query: 121 PSKQVSNPRLESLQLLNSY-----------------------------EILRVAGARYVH 180
+KQVSNP L+SLQLLNSY EI RVAGARYVH
Sbjct: 121 SNKQVSNPCLDSLQLLNSYGTKVKRMKGENLNKRGDEAGEENKTLSTEEIFRVAGARYVH 180
Query: 181 FFPDGYDDVYMLRHPCDFSISGLLKDEREEVELAHVLFAAAEK-------SSSSFL---- 237
FFP+G+DD YML HPCDF++SGL +DERE+VELA+VLFAAAEK +S L
Sbjct: 181 FFPEGHDDFYMLTHPCDFALSGLSEDEREDVELANVLFAAAEKVGYQQFDRASRLLQRCE 240
BLAST of Bhi09M000671 vs. ExPASy TrEMBL
Match: A0A1S3BQZ0 (DELLA protein RGL2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492753 PE=3 SV=1) HSP 1 Score: 320.9 bits (821), Expect = 4.6e-84 Identity = 182/296 (61.49%), Postives = 204/296 (68.92%), Query Frame = 0
Query: 1 MADGFFSFTPFDFSGSRAGTFFPSN-GVHEKPETEHRGKEDDCPFRMEEFGDFNFLSANQ 60
MADGFFSFTPFDFSGS+ TFFPSN GVHEK ETE GKEDDCPFRM+EFGDFNF SANQ
Sbjct: 1 MADGFFSFTPFDFSGSQPETFFPSNGGVHEKQETEQHGKEDDCPFRMDEFGDFNFPSANQ 60
Query: 61 SGLYQQDILKIGDQTNYQQPNSDCLIFDELLFDNDFTISELIREKSKISENPAAYSISLN 120
G YQQDI KI DQTNYQ PNSDCLIFDELLF NDFTISELI+EKSKISEN +A SIS N
Sbjct: 61 FGFYQQDISKIVDQTNYQHPNSDCLIFDELLFGNDFTISELIQEKSKISENLSADSISFN 120
Query: 121 PSKQVSNPRLESLQLLNSY-----------------------------EILRVAGARYVH 180
+KQVSNP L+SLQLLNSY EI RVAGARYVH
Sbjct: 121 SNKQVSNPCLDSLQLLNSYGTKVKRMKGENLNKRGDEAGEENKTLSTEEIFRVAGARYVH 180
Query: 181 FFPDGYDDVYMLRHPCDFSISGLLKDEREEVELAHVLFAAAEK-------SSSSFL---- 237
FFP+G+DD YML HPCDF++SGL +DERE+VELA+VLFAAAEK +S L
Sbjct: 181 FFPEGHDDFYMLTHPCDFALSGLSEDEREDVELANVLFAAAEKVGYQQFDRASRLLQRCE 240
BLAST of Bhi09M000671 vs. ExPASy TrEMBL
Match: A0A6J1CTR1 (DELLA protein RGL2-like OS=Momordica charantia OX=3673 GN=LOC111014683 PE=3 SV=1) HSP 1 Score: 306.2 bits (783), Expect = 1.2e-79 Identity = 177/297 (59.60%), Postives = 201/297 (67.68%), Query Frame = 0
Query: 1 MADGFFSFTPFDFSGSRAGTFFPSNGVHEKPETEHRGKEDDCPFRMEEFGDFNFLSANQS 60
MADGFFSFTPFDF+GS+ FFP NG +EKPE+E RGK DDCPFRMEEFGDFNFLSA+QS
Sbjct: 1 MADGFFSFTPFDFNGSQGEAFFPFNGCYEKPESELRGKADDCPFRMEEFGDFNFLSADQS 60
Query: 61 GLYQQDILKIGDQTNYQQPNSDCLIFDELLFDNDFTISELIREKSKISENPAAYSISLNP 120
G YQQ++ KIGDQTNYQQP SD LIFDELLF+N+ TISE I EKSKISEN AA SIS NP
Sbjct: 61 GFYQQNVPKIGDQTNYQQPYSDDLIFDELLFNNNITISESIPEKSKISENLAADSISFNP 120
Query: 121 SKQVSNPRLESLQLLNSY------------------------------EILRVAGARYVH 180
SKQVSNP LESLQLLNSY EILRVAGARYVH
Sbjct: 121 SKQVSNPCLESLQLLNSYGAKFKRRMKGTKLGNRGIEASEENKKLSTEEILRVAGARYVH 180
Query: 181 FFPDGYDDVYMLRHPCDFSISGLLKDEREEVELAHVLFAAAEK-------SSSSFL---- 237
FFP+G+DD YM HPCDF++SGL +DE ++VELAHVLFAAAEK +S L
Sbjct: 181 FFPEGHDDFYMPMHPCDFALSGLSEDEIKDVELAHVLFAAAEKVGYQQYDRASRLLQRCE 240
BLAST of Bhi09M000671 vs. ExPASy TrEMBL
Match: A0A6J1GPK2 (DELLA protein RGL1-like OS=Cucurbita moschata OX=3662 GN=LOC111455972 PE=3 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 3.5e-71 Identity = 165/295 (55.93%), Postives = 188/295 (63.73%), Query Frame = 0
Query: 1 MADGFFSFTPFDFSGSRAGTFFPSNGVHEKPETEHRGKEDDCPFRMEEFGDFNFLSANQS 60
MAD FF FTPFDF+GS AGTFFPSNG+H+ ETE RGKEDDCPF E GDFNF+S +QS
Sbjct: 1 MADDFFPFTPFDFNGSLAGTFFPSNGIHQNQETELRGKEDDCPF--GELGDFNFVSPDQS 60
Query: 61 GLYQQDILKIGDQTNYQQPNSDCLIFDELLF--DNDFTISELIREKSKISENPAAYSISL 120
G YQQDILKIG++T Y QPNSDCLI +E+LF NDFT+SELI+EKSKIS+N A SI
Sbjct: 61 GFYQQDILKIGNETEYPQPNSDCLILNEILFGIGNDFTLSELIQEKSKISDNLNADSI-- 120
Query: 121 NPSKQVSNPRLESLQLLNSY-----------------------------EILRVAGARYV 180
SKQV NP LESLQLLNSY EILRVAGARYV
Sbjct: 121 --SKQVLNPCLESLQLLNSYGAKVKRMKGTDLEKRGGEASEENKSLSTEEILRVAGARYV 180
Query: 181 HFFPDGYDDVYMLRHPCDFSISGLLKDEREEVELAHVLFAAAEKSSSS------------ 237
HFFP+G+D+ YM HPCDF+++GL DER +VELAHVLFAAAEK S
Sbjct: 181 HFFPEGHDEFYMPMHPCDFALTGLSVDERNDVELAHVLFAAAEKVSYQQYERASRLLQRC 240
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0K9I9 | 7.7e-87 | 62.50 | GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G407700 PE=3 S... | [more] |
| A0A5A7TXT2 | 4.2e-85 | 62.16 | DELLA protein RGL2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... | [more] |
| A0A1S3BQZ0 | 4.6e-84 | 61.49 | DELLA protein RGL2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492753 PE=3 ... | [more] |
| A0A6J1CTR1 | 1.2e-79 | 59.60 | DELLA protein RGL2-like OS=Momordica charantia OX=3673 GN=LOC111014683 PE=3 SV=1 | [more] |
| A0A6J1GPK2 | 3.5e-71 | 55.93 | DELLA protein RGL1-like OS=Cucurbita moschata OX=3662 GN=LOC111455972 PE=3 SV=1 | [more] |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Bhi09M000671.exon3 | Bhi09M000671.exon3 | exon |
| Bhi09M000671.exon2 | Bhi09M000671.exon2 | exon |
| Bhi09M000671.exon1 | Bhi09M000671.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| cds.Bhi09M000671 | cds.Bhi09M000671_3 | CDS |
| cds.Bhi09M000671 | cds.Bhi09M000671_2 | CDS |
| cds.Bhi09M000671 | cds.Bhi09M000671 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Bhi09M000671 | Bhi09M000671-protein | polypeptide |
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0003700 |
DNA-binding transcription factor activity |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
|
