Bhi09M000605 (mRNA) Wax gourd (B227) v1

Overview
NameBhi09M000605
TypemRNA
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionLysM domain-containing protein
Locationchr9: 16054291 .. 16054908 (-)
Sequence length618
RNA-Seq ExpressionBhi09M000605
SyntenyBhi09M000605
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGCCTACAGAAAAGGTGAATTCGACCATTTGGGAGCTCATCCCCTGCTAGCATCCTCCCCTAATCTCCGTGGAGGCCGCCATAGAAAATCAAGAAGCTTTGCAAATGGTTTTCCTTTTGAAAACGTTGAATTCACAGATGTCGTTACCGCTCAAAATGGAACAACTGACTCGATCAAAGGGGGTGAAAAACGGGTCAGAAGACGCCAGAAATCTATGGCGGACTTCTCCACCGCTACCGAAAGCATTTCGAACAAGACGTATGCCAGCAATAATGGTGACTGTTTGTCATTGACAAGAAAAAGCTTAGAGGTGAGACTGAAAGGAGCTCTTGCAAGAACTAATGCTGCAGCATCAAATGGGGTTACTGAAGTGAGTAAATTGACACCAAATTTAACGGATGATTTGGGAGGAGACTCGTTTATGAGAAGATCATCAAGTACATGTAATTTACAGGAAGTTGAAAAAGGAAATTCTTCCTCATCCATGTGGTCAACATCTTCTTGGAGTTTGAAAACAGATCTTCAAGCACTTTCATCTGCAAAGGTAACCAAGTCGATATTTGAAGGTTTGCCAAAGCCAGGATCAACCAGGTATAAAGCTTCAATGGATTGA

mRNA sequence

ATGACTGCCTACAGAAAAGGTGAATTCGACCATTTGGGAGCTCATCCCCTGCTAGCATCCTCCCCTAATCTCCGTGGAGGCCGCCATAGAAAATCAAGAAGCTTTGCAAATGGTTTTCCTTTTGAAAACGTTGAATTCACAGATGTCGTTACCGCTCAAAATGGAACAACTGACTCGATCAAAGGGGGTGAAAAACGGGTCAGAAGACGCCAGAAATCTATGGCGGACTTCTCCACCGCTACCGAAAGCATTTCGAACAAGACGTATGCCAGCAATAATGGTGACTGTTTGTCATTGACAAGAAAAAGCTTAGAGGTGAGACTGAAAGGAGCTCTTGCAAGAACTAATGCTGCAGCATCAAATGGGGTTACTGAAGTGAGTAAATTGACACCAAATTTAACGGATGATTTGGGAGGAGACTCGTTTATGAGAAGATCATCAAGTACATGTAATTTACAGGAAGTTGAAAAAGGAAATTCTTCCTCATCCATGTGGTCAACATCTTCTTGGAGTTTGAAAACAGATCTTCAAGCACTTTCATCTGCAAAGGTAACCAAGTCGATATTTGAAGGTTTGCCAAAGCCAGGATCAACCAGGTATAAAGCTTCAATGGATTGA

Coding sequence (CDS)

ATGACTGCCTACAGAAAAGGTGAATTCGACCATTTGGGAGCTCATCCCCTGCTAGCATCCTCCCCTAATCTCCGTGGAGGCCGCCATAGAAAATCAAGAAGCTTTGCAAATGGTTTTCCTTTTGAAAACGTTGAATTCACAGATGTCGTTACCGCTCAAAATGGAACAACTGACTCGATCAAAGGGGGTGAAAAACGGGTCAGAAGACGCCAGAAATCTATGGCGGACTTCTCCACCGCTACCGAAAGCATTTCGAACAAGACGTATGCCAGCAATAATGGTGACTGTTTGTCATTGACAAGAAAAAGCTTAGAGGTGAGACTGAAAGGAGCTCTTGCAAGAACTAATGCTGCAGCATCAAATGGGGTTACTGAAGTGAGTAAATTGACACCAAATTTAACGGATGATTTGGGAGGAGACTCGTTTATGAGAAGATCATCAAGTACATGTAATTTACAGGAAGTTGAAAAAGGAAATTCTTCCTCATCCATGTGGTCAACATCTTCTTGGAGTTTGAAAACAGATCTTCAAGCACTTTCATCTGCAAAGGTAACCAAGTCGATATTTGAAGGTTTGCCAAAGCCAGGATCAACCAGGTATAAAGCTTCAATGGATTGA

Protein sequence

MTAYRKGEFDHLGAHPLLASSPNLRGGRHRKSRSFANGFPFENVEFTDVVTAQNGTTDSIKGGEKRVRRRQKSMADFSTATESISNKTYASNNGDCLSLTRKSLEVRLKGALARTNAAASNGVTEVSKLTPNLTDDLGGDSFMRRSSSTCNLQEVEKGNSSSSMWSTSSWSLKTDLQALSSAKVTKSIFEGLPKPGSTRYKASMD
Homology
BLAST of Bhi09M000605 vs. TAIR 10
Match: AT5G08200.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-19
Identity = 83/208 (39.90%), Postives = 111/208 (53.37%), Query Frame = 0

Query: 4   YRKGEFDHLGAHPLLASSPNLRGGRHRKSRSFANGFPFENVEFTDVVTAQNGTTDSIKGG 63
           +  G+  +L   P    S N     HRKSRS  N    E V  +     Q  T+D     
Sbjct: 216 FNNGDNGYLRPFP----STNTPLNHHRKSRSLVNAL-IEEVNQSPDNNTQEPTSD----- 275

Query: 64  EKRVRRRQKSMADFSTAT-ESISNKTYASNNGDCLSLTRKSLEVRLKGALARTNAAASNG 123
            K +RRRQKS ADFS+ T E +  +   S+NG  LS+  K L +R K A +RTN AA + 
Sbjct: 276 -KFMRRRQKSEADFSSRTPELVLKEENGSSNGGFLSIAGKGLALRSK-ASSRTNLAAESE 335

Query: 124 VTEVSKLTPNLTDDLGGDSF--MRRSSSTCNLQEVE--KGNSSSSMWSTSSWSLKTDLQA 183
               + ++ NL D    DSF  +R+SSS  +LQ+ +    N S S+W TS WSLK DL  
Sbjct: 336 NGNFNPVSMNLMDAPVSDSFSSVRKSSSASSLQDPDGNSNNGSLSLWPTSKWSLKPDL-- 395

Query: 184 LSSAKVTKSIFEGLPKP-GSTRYKASMD 206
           L+ A +T SIF+GLPKP    R K ++D
Sbjct: 396 LTPAAITSSIFDGLPKPLTGRRNKTALD 409

BLAST of Bhi09M000605 vs. TAIR 10
Match: AT5G23130.1 (Peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-14
Identity = 68/183 (37.16%), Postives = 100/183 (54.64%), Query Frame = 0

Query: 16  PLLASSPNLRGGRHRKSRSFANGFPFENVEFTDVVTAQNGTTDSIKGGEKRVRRRQKSMA 75
           P  A+S  L    HRKSRS  +    E  +  +   A  G  +S    +K +RRRQKS A
Sbjct: 214 PFPATSTPL--SHHRKSRSLVDAVIAEVNQSPNPSKAGGGEVNST---DKPMRRRQKSEA 273

Query: 76  DFST-ATESISNKTYASNNGDCLSLTRKSLEVRLKGALARTNAAASNGVTEVSKLTPNLT 135
           DFS+ A E +  +   S++G   ++  K+L +R K A +R N +A      ++ +  NL 
Sbjct: 274 DFSSRAPELLLKEENRSSSGAFSAIAGKNLALRSK-ASSRANLSAE--TRHLNSIPINLM 333

Query: 136 DDLGGDSF--MRRSSSTCNLQEVEKGNSSSSMWSTSSWSLKTDLQALSSAKVTKSIFEGL 195
           D   GDSF  +R+S S  +LQE    ++ SS+W TS W+LK +L  L+   +  SIF+GL
Sbjct: 334 DAPVGDSFSSVRKSVSASSLQEPNCNSNGSSLWPTSKWTLKPEL--LTQVAMASSIFDGL 386

BLAST of Bhi09M000605 vs. ExPASy TrEMBL
Match: A0A1S3CEJ2 (uncharacterized protein LOC103499969 OS=Cucumis melo OX=3656 GN=LOC103499969 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.3e-79
Identity = 168/214 (78.50%), Postives = 185/214 (86.45%), Query Frame = 0

Query: 1   MTAYRKGEFDHLGAHPLLASSPNLRGGRHRKSRSFANGFPFENVEFTDVVTAQNGTTDSI 60
           +T+Y KGEFDHLG+HP LASS N  G RHRKSRSFANGF  EN+EFTD+VTA NG TDSI
Sbjct: 159 LTSYGKGEFDHLGSHPKLASSHNPHGRRHRKSRSFANGFSLENIEFTDIVTAPNGATDSI 218

Query: 61  KGGEKRVRRRQKSMADFSTATESISNKTYASNNGDCLSLTRKSLEVRLKGALARTNAAAS 120
           KGGEK  RRRQKSMADFSTATESISNKTYA+NNG+CLS+T++SL++RLKGAL RTN AAS
Sbjct: 219 KGGEKLCRRRQKSMADFSTATESISNKTYATNNGECLSMTKRSLDLRLKGALGRTN-AAS 278

Query: 121 NGVTEVSKLTPNLTDDLGGD-SFM-------RRSSSTCNLQEVEKGN-SSSSMWSTSSWS 180
           NGVTE+SKLTPNLTDD+GG+ SFM       RRSSSTCNLQE +KGN SSSSMWST SWS
Sbjct: 279 NGVTELSKLTPNLTDDVGGNSSFMSNRILGGRRSSSTCNLQEADKGNSSSSSMWST-SWS 338

Query: 181 LKTDLQALSSAKVTKSIFEGLPKPGSTRYKASMD 206
           LKTDLQA SSA VTKSIFEGLP+ GSTRYKAS D
Sbjct: 339 LKTDLQAFSSAMVTKSIFEGLPRSGSTRYKASRD 370

BLAST of Bhi09M000605 vs. ExPASy TrEMBL
Match: A0A5D3CFU3 (Peptidoglycan-binding LysM domain-containing protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00170 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.3e-79
Identity = 168/214 (78.50%), Postives = 185/214 (86.45%), Query Frame = 0

Query: 1   MTAYRKGEFDHLGAHPLLASSPNLRGGRHRKSRSFANGFPFENVEFTDVVTAQNGTTDSI 60
           +T+Y KGEFDHLG+HP LASS N  G RHRKSRSFANGF  EN+EFTD+VTA NG TDSI
Sbjct: 159 LTSYGKGEFDHLGSHPKLASSHNPHGRRHRKSRSFANGFSLENIEFTDIVTAPNGATDSI 218

Query: 61  KGGEKRVRRRQKSMADFSTATESISNKTYASNNGDCLSLTRKSLEVRLKGALARTNAAAS 120
           KGGEK  RRRQKSMADFSTATESISNKTYA+NNG+CLS+T++SL++RLKGAL RTN AAS
Sbjct: 219 KGGEKLCRRRQKSMADFSTATESISNKTYATNNGECLSMTKRSLDLRLKGALGRTN-AAS 278

Query: 121 NGVTEVSKLTPNLTDDLGGD-SFM-------RRSSSTCNLQEVEKGN-SSSSMWSTSSWS 180
           NGVTE+SKLTPNLTDD+GG+ SFM       RRSSSTCNLQE +KGN SSSSMWST SWS
Sbjct: 279 NGVTELSKLTPNLTDDVGGNSSFMSNRILGGRRSSSTCNLQEADKGNSSSSSMWST-SWS 338

Query: 181 LKTDLQALSSAKVTKSIFEGLPKPGSTRYKASMD 206
           LKTDLQA SSA VTKSIFEGLP+ GSTRYKAS D
Sbjct: 339 LKTDLQAFSSAMVTKSIFEGLPRSGSTRYKASRD 370

BLAST of Bhi09M000605 vs. ExPASy TrEMBL
Match: A0A0A0KBC9 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G420740 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.9e-78
Identity = 162/214 (75.70%), Postives = 179/214 (83.64%), Query Frame = 0

Query: 1   MTAYRKGEFDHLGAHPLLASSPNLRGGRHRKSRSFANGFPFENVEFTDVVTAQNGTTDSI 60
           +T+Y KGEF+ LG+HP LASS N  G  HRKSRSFANGFP EN+EFTD+VTA NG  DSI
Sbjct: 161 LTSYSKGEFNQLGSHPKLASSHNPHGSHHRKSRSFANGFPLENIEFTDIVTAPNGAADSI 220

Query: 61  KGGEKRVRRRQKSMADFSTATESISNKTYASNNGDCLSLTRKSLEVRLKGALARTNAAAS 120
           KG EK  RRRQKSMADFSTATESI NKTYA+NNG+CLS+TR+SL++RLKG L RTN AAS
Sbjct: 221 KGSEKLCRRRQKSMADFSTATESILNKTYATNNGECLSMTRRSLDLRLKGVLGRTN-AAS 280

Query: 121 NGVTEVSKLTPNLTDDLGGDSFM--------RRSSSTCNLQEVEKGN-SSSSMWSTSSWS 180
           NGVTE+SKLTPNLTDD+GGDS +        RRSSSTCNLQE +KGN SSSS WSTSSWS
Sbjct: 281 NGVTELSKLTPNLTDDMGGDSSLMRNGILGGRRSSSTCNLQEADKGNASSSSKWSTSSWS 340

Query: 181 LKTDLQALSSAKVTKSIFEGLPKPGSTRYKASMD 206
           LKTDLQA SSA VTKSIFEGLP+ GSTRYKAS D
Sbjct: 341 LKTDLQAFSSAMVTKSIFEGLPRSGSTRYKASRD 373

BLAST of Bhi09M000605 vs. ExPASy TrEMBL
Match: A0A6J1GPY6 (uncharacterized protein LOC111456405 OS=Cucurbita moschata OX=3662 GN=LOC111456405 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 6.0e-64
Identity = 151/221 (68.33%), Postives = 170/221 (76.92%), Query Frame = 0

Query: 2   TAYRKGEFDHLG------AHPLLASSPNLRGGRHRKSRSFANGFPFENVEFTDVVTAQ-- 61
           TAYRKGEF+H G       HP+LASS N    RHRKSRSFANGF FENVEFTD+++A   
Sbjct: 163 TAYRKGEFNHGGTTTTTTTHPMLASSHNPHQNRHRKSRSFANGFHFENVEFTDIISASAP 222

Query: 62  NGTTDSIKGGEKRVRRRQKSMADFSTATESISNKTYASNNGDCLSLTRKSLEVRLKGALA 121
           +G  DS KG EK VRRRQKSMADFS A +S+ NKTY S NG+C S+T K+L+VRL G  +
Sbjct: 223 SGAIDSTKGSEKLVRRRQKSMADFSIAADSVFNKTYIS-NGECFSMTTKNLDVRLDGG-S 282

Query: 122 RTNAAASNGVTEVSKLTPNLTDDLGGDSFM---------RRSSSTCNLQEVEKGNSSSSM 181
           R N A SNGVTEVSKLTP LTDD+GG SFM         RRSSSTCNLQ+ EKGNSSSSM
Sbjct: 283 RIN-ATSNGVTEVSKLTPILTDDVGGGSFMGSNGMMIGGRRSSSTCNLQDTEKGNSSSSM 342

Query: 182 WSTSSWSLKTDLQALSSAKVTKSIFEGLPKPGSTRYKASMD 206
           WST SWSLKTDLQALS+A VTKSIF+GLP+  +TRYKASMD
Sbjct: 343 WST-SWSLKTDLQALSTAMVTKSIFDGLPR-STTRYKASMD 378

BLAST of Bhi09M000605 vs. ExPASy TrEMBL
Match: A0A6J1JLY4 (uncharacterized protein LOC111488087 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488087 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.5e-62
Identity = 148/219 (67.58%), Postives = 167/219 (76.26%), Query Frame = 0

Query: 2   TAYRKGEFDHLG-----AHPLLASSPNLRGGRHRKSRSFANGFPFENVEFTDVVTAQNGT 61
           TAYRKGEF+H G      HP+LASS N    RHRKSRSFA+GF FENVEFTD+++A  G 
Sbjct: 140 TAYRKGEFNHGGTTTITTHPMLASSHNPHQNRHRKSRSFADGFHFENVEFTDIISAPYGA 199

Query: 62  TDSIKGGEKRVRRRQKSMADFSTATESISNKTYASNNGDCLSLTRKSLEVRLKGALARTN 121
            DS KG EK VRRRQKSMADFS A +S+ NKTY S NG+  S+T K+L+VRL    +R N
Sbjct: 200 IDSTKGSEKLVRRRQKSMADFSIAADSVLNKTYIS-NGESFSMTTKNLDVRLDRG-SRIN 259

Query: 122 AAASNGVTEVSKLTPNLTDDLGGDSFM----------RRSSSTCNLQEVEKGNSSSSMWS 181
            A SNGVTEVSKLTP LTDD+GG SFM          RRSSSTCNLQ+ EKGNSSSSMWS
Sbjct: 260 -ATSNGVTEVSKLTPILTDDVGGGSFMGSSNGMMIGGRRSSSTCNLQDTEKGNSSSSMWS 319

Query: 182 TSSWSLKTDLQALSSAKVTKSIFEGLPKPGSTRYKASMD 206
           T SWSLKTDLQALS+A VTKSIF+GLP+  +TRYKASMD
Sbjct: 320 T-SWSLKTDLQALSTAMVTKSIFDGLPR-STTRYKASMD 353

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT5G08200.12.0e-1939.90peptidoglycan-binding LysM domain-containing protein [more]
AT5G23130.12.5e-1437.16Peptidoglycan-binding LysM domain-containing protein [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3CEJ21.3e-7978.50uncharacterized protein LOC103499969 OS=Cucumis melo OX=3656 GN=LOC103499969 PE=... [more]
A0A5D3CFU31.3e-7978.50Peptidoglycan-binding LysM domain-containing protein, putative isoform 1 OS=Cucu... [more]
A0A0A0KBC91.9e-7875.70LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G420740 PE=4 S... [more]
A0A6J1GPY66.0e-6468.33uncharacterized protein LOC111456405 OS=Cucurbita moschata OX=3662 GN=LOC1114564... [more]
A0A6J1JLY42.5e-6267.58uncharacterized protein LOC111488087 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..167
NoneNo IPR availablePANTHERPTHR20932:SF36PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEINcoord: 3..205
IPR045030LysM and putative peptidoglycan-binding domain-containing protein 1-4PANTHERPTHR20932LOC443603 PROTEIN-RELATEDcoord: 3..205

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi09G000605Bhi09G000605gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi09M000605.exon1Bhi09M000605.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi09M000605cds.Bhi09M000605CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi09M000605Bhi09M000605-proteinpolypeptide