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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGACTGCCTACAGAAAAGGTGAATTCGACCATTTGGGAGCTCATCCCCTGCTAGCATCCTCCCCTAATCTCCGTGGAGGCCGCCATAGAAAATCAAGAAGCTTTGCAAATGGTTTTCCTTTTGAAAACGTTGAATTCACAGATGTCGTTACCGCTCAAAATGGAACAACTGACTCGATCAAAGGGGGTGAAAAACGGGTCAGAAGACGCCAGAAATCTATGGCGGACTTCTCCACCGCTACCGAAAGCATTTCGAACAAGACGTATGCCAGCAATAATGGTGACTGTTTGTCATTGACAAGAAAAAGCTTAGAGGTGAGACTGAAAGGAGCTCTTGCAAGAACTAATGCTGCAGCATCAAATGGGGTTACTGAAGTGAGTAAATTGACACCAAATTTAACGGATGATTTGGGAGGAGACTCGTTTATGAGAAGATCATCAAGTACATGTAATTTACAGGAAGTTGAAAAAGGAAATTCTTCCTCATCCATGTGGTCAACATCTTCTTGGAGTTTGAAAACAGATCTTCAAGCACTTTCATCTGCAAAGGTAACCAAGTCGATATTTGAAGGTTTGCCAAAGCCAGGATCAACCAGGTATAAAGCTTCAATGGATTGA mRNA sequence ATGACTGCCTACAGAAAAGGTGAATTCGACCATTTGGGAGCTCATCCCCTGCTAGCATCCTCCCCTAATCTCCGTGGAGGCCGCCATAGAAAATCAAGAAGCTTTGCAAATGGTTTTCCTTTTGAAAACGTTGAATTCACAGATGTCGTTACCGCTCAAAATGGAACAACTGACTCGATCAAAGGGGGTGAAAAACGGGTCAGAAGACGCCAGAAATCTATGGCGGACTTCTCCACCGCTACCGAAAGCATTTCGAACAAGACGTATGCCAGCAATAATGGTGACTGTTTGTCATTGACAAGAAAAAGCTTAGAGGTGAGACTGAAAGGAGCTCTTGCAAGAACTAATGCTGCAGCATCAAATGGGGTTACTGAAGTGAGTAAATTGACACCAAATTTAACGGATGATTTGGGAGGAGACTCGTTTATGAGAAGATCATCAAGTACATGTAATTTACAGGAAGTTGAAAAAGGAAATTCTTCCTCATCCATGTGGTCAACATCTTCTTGGAGTTTGAAAACAGATCTTCAAGCACTTTCATCTGCAAAGGTAACCAAGTCGATATTTGAAGGTTTGCCAAAGCCAGGATCAACCAGGTATAAAGCTTCAATGGATTGA Coding sequence (CDS) ATGACTGCCTACAGAAAAGGTGAATTCGACCATTTGGGAGCTCATCCCCTGCTAGCATCCTCCCCTAATCTCCGTGGAGGCCGCCATAGAAAATCAAGAAGCTTTGCAAATGGTTTTCCTTTTGAAAACGTTGAATTCACAGATGTCGTTACCGCTCAAAATGGAACAACTGACTCGATCAAAGGGGGTGAAAAACGGGTCAGAAGACGCCAGAAATCTATGGCGGACTTCTCCACCGCTACCGAAAGCATTTCGAACAAGACGTATGCCAGCAATAATGGTGACTGTTTGTCATTGACAAGAAAAAGCTTAGAGGTGAGACTGAAAGGAGCTCTTGCAAGAACTAATGCTGCAGCATCAAATGGGGTTACTGAAGTGAGTAAATTGACACCAAATTTAACGGATGATTTGGGAGGAGACTCGTTTATGAGAAGATCATCAAGTACATGTAATTTACAGGAAGTTGAAAAAGGAAATTCTTCCTCATCCATGTGGTCAACATCTTCTTGGAGTTTGAAAACAGATCTTCAAGCACTTTCATCTGCAAAGGTAACCAAGTCGATATTTGAAGGTTTGCCAAAGCCAGGATCAACCAGGTATAAAGCTTCAATGGATTGA Protein sequence MTAYRKGEFDHLGAHPLLASSPNLRGGRHRKSRSFANGFPFENVEFTDVVTAQNGTTDSIKGGEKRVRRRQKSMADFSTATESISNKTYASNNGDCLSLTRKSLEVRLKGALARTNAAASNGVTEVSKLTPNLTDDLGGDSFMRRSSSTCNLQEVEKGNSSSSMWSTSSWSLKTDLQALSSAKVTKSIFEGLPKPGSTRYKASMD
Homology
BLAST of Bhi09M000605 vs. TAIR 10
Match: AT5G08200.1 (peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 93.6 bits (231), Expect = 2.0e-19 Identity = 83/208 (39.90%), Postives = 111/208 (53.37%), Query Frame = 0 Query: 4 YRKGEFDHLGAHPLLASSPNLRGGRHRKSRSFANGFPFENVEFTDVVTAQNGTTDSIKGG 63 + G+ +L P S N HRKSRS N E V + Q T+D Sbjct: 216 FNNGDNGYLRPFP----STNTPLNHHRKSRSLVNAL-IEEVNQSPDNNTQEPTSD----- 275
Query: 64 EKRVRRRQKSMADFSTAT-ESISNKTYASNNGDCLSLTRKSLEVRLKGALARTNAAASNG 123 K +RRRQKS ADFS+ T E + + S+NG LS+ K L +R K A +RTN AA + Sbjct: 276 -KFMRRRQKSEADFSSRTPELVLKEENGSSNGGFLSIAGKGLALRSK-ASSRTNLAAESE 335
Query: 124 VTEVSKLTPNLTDDLGGDSF--MRRSSSTCNLQEVE--KGNSSSSMWSTSSWSLKTDLQA 183 + ++ NL D DSF +R+SSS +LQ+ + N S S+W TS WSLK DL Sbjct: 336 NGNFNPVSMNLMDAPVSDSFSSVRKSSSASSLQDPDGNSNNGSLSLWPTSKWSLKPDL-- 395
Query: 184 LSSAKVTKSIFEGLPKP-GSTRYKASMD 206 L+ A +T SIF+GLPKP R K ++D Sbjct: 396 LTPAAITSSIFDGLPKPLTGRRNKTALD 409
BLAST of Bhi09M000605 vs. TAIR 10
Match: AT5G23130.1 (Peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 76.6 bits (187), Expect = 2.5e-14 Identity = 68/183 (37.16%), Postives = 100/183 (54.64%), Query Frame = 0 Query: 16 PLLASSPNLRGGRHRKSRSFANGFPFENVEFTDVVTAQNGTTDSIKGGEKRVRRRQKSMA 75 P A+S L HRKSRS + E + + A G +S +K +RRRQKS A Sbjct: 214 PFPATSTPL--SHHRKSRSLVDAVIAEVNQSPNPSKAGGGEVNST---DKPMRRRQKSEA 273
Query: 76 DFST-ATESISNKTYASNNGDCLSLTRKSLEVRLKGALARTNAAASNGVTEVSKLTPNLT 135 DFS+ A E + + S++G ++ K+L +R K A +R N +A ++ + NL Sbjct: 274 DFSSRAPELLLKEENRSSSGAFSAIAGKNLALRSK-ASSRANLSAE--TRHLNSIPINLM 333
Query: 136 DDLGGDSF--MRRSSSTCNLQEVEKGNSSSSMWSTSSWSLKTDLQALSSAKVTKSIFEGL 195 D GDSF +R+S S +LQE ++ SS+W TS W+LK +L L+ + SIF+GL Sbjct: 334 DAPVGDSFSSVRKSVSASSLQEPNCNSNGSSLWPTSKWTLKPEL--LTQVAMASSIFDGL 386
BLAST of Bhi09M000605 vs. ExPASy TrEMBL
Match: A0A1S3CEJ2 (uncharacterized protein LOC103499969 OS=Cucumis melo OX=3656 GN=LOC103499969 PE=4 SV=1) HSP 1 Score: 305.8 bits (782), Expect = 1.3e-79 Identity = 168/214 (78.50%), Postives = 185/214 (86.45%), Query Frame = 0 Query: 1 MTAYRKGEFDHLGAHPLLASSPNLRGGRHRKSRSFANGFPFENVEFTDVVTAQNGTTDSI 60 +T+Y KGEFDHLG+HP LASS N G RHRKSRSFANGF EN+EFTD+VTA NG TDSI Sbjct: 159 LTSYGKGEFDHLGSHPKLASSHNPHGRRHRKSRSFANGFSLENIEFTDIVTAPNGATDSI 218
Query: 61 KGGEKRVRRRQKSMADFSTATESISNKTYASNNGDCLSLTRKSLEVRLKGALARTNAAAS 120 KGGEK RRRQKSMADFSTATESISNKTYA+NNG+CLS+T++SL++RLKGAL RTN AAS Sbjct: 219 KGGEKLCRRRQKSMADFSTATESISNKTYATNNGECLSMTKRSLDLRLKGALGRTN-AAS 278
Query: 121 NGVTEVSKLTPNLTDDLGGD-SFM-------RRSSSTCNLQEVEKGN-SSSSMWSTSSWS 180 NGVTE+SKLTPNLTDD+GG+ SFM RRSSSTCNLQE +KGN SSSSMWST SWS Sbjct: 279 NGVTELSKLTPNLTDDVGGNSSFMSNRILGGRRSSSTCNLQEADKGNSSSSSMWST-SWS 338
Query: 181 LKTDLQALSSAKVTKSIFEGLPKPGSTRYKASMD 206 LKTDLQA SSA VTKSIFEGLP+ GSTRYKAS D Sbjct: 339 LKTDLQAFSSAMVTKSIFEGLPRSGSTRYKASRD 370
BLAST of Bhi09M000605 vs. ExPASy TrEMBL
Match: A0A5D3CFU3 (Peptidoglycan-binding LysM domain-containing protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00170 PE=4 SV=1) HSP 1 Score: 305.8 bits (782), Expect = 1.3e-79 Identity = 168/214 (78.50%), Postives = 185/214 (86.45%), Query Frame = 0 Query: 1 MTAYRKGEFDHLGAHPLLASSPNLRGGRHRKSRSFANGFPFENVEFTDVVTAQNGTTDSI 60 +T+Y KGEFDHLG+HP LASS N G RHRKSRSFANGF EN+EFTD+VTA NG TDSI Sbjct: 159 LTSYGKGEFDHLGSHPKLASSHNPHGRRHRKSRSFANGFSLENIEFTDIVTAPNGATDSI 218
Query: 61 KGGEKRVRRRQKSMADFSTATESISNKTYASNNGDCLSLTRKSLEVRLKGALARTNAAAS 120 KGGEK RRRQKSMADFSTATESISNKTYA+NNG+CLS+T++SL++RLKGAL RTN AAS Sbjct: 219 KGGEKLCRRRQKSMADFSTATESISNKTYATNNGECLSMTKRSLDLRLKGALGRTN-AAS 278
Query: 121 NGVTEVSKLTPNLTDDLGGD-SFM-------RRSSSTCNLQEVEKGN-SSSSMWSTSSWS 180 NGVTE+SKLTPNLTDD+GG+ SFM RRSSSTCNLQE +KGN SSSSMWST SWS Sbjct: 279 NGVTELSKLTPNLTDDVGGNSSFMSNRILGGRRSSSTCNLQEADKGNSSSSSMWST-SWS 338
Query: 181 LKTDLQALSSAKVTKSIFEGLPKPGSTRYKASMD 206 LKTDLQA SSA VTKSIFEGLP+ GSTRYKAS D Sbjct: 339 LKTDLQAFSSAMVTKSIFEGLPRSGSTRYKASRD 370
BLAST of Bhi09M000605 vs. ExPASy TrEMBL
Match: A0A0A0KBC9 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G420740 PE=4 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 1.9e-78 Identity = 162/214 (75.70%), Postives = 179/214 (83.64%), Query Frame = 0 Query: 1 MTAYRKGEFDHLGAHPLLASSPNLRGGRHRKSRSFANGFPFENVEFTDVVTAQNGTTDSI 60 +T+Y KGEF+ LG+HP LASS N G HRKSRSFANGFP EN+EFTD+VTA NG DSI Sbjct: 161 LTSYSKGEFNQLGSHPKLASSHNPHGSHHRKSRSFANGFPLENIEFTDIVTAPNGAADSI 220
Query: 61 KGGEKRVRRRQKSMADFSTATESISNKTYASNNGDCLSLTRKSLEVRLKGALARTNAAAS 120 KG EK RRRQKSMADFSTATESI NKTYA+NNG+CLS+TR+SL++RLKG L RTN AAS Sbjct: 221 KGSEKLCRRRQKSMADFSTATESILNKTYATNNGECLSMTRRSLDLRLKGVLGRTN-AAS 280
Query: 121 NGVTEVSKLTPNLTDDLGGDSFM--------RRSSSTCNLQEVEKGN-SSSSMWSTSSWS 180 NGVTE+SKLTPNLTDD+GGDS + RRSSSTCNLQE +KGN SSSS WSTSSWS Sbjct: 281 NGVTELSKLTPNLTDDMGGDSSLMRNGILGGRRSSSTCNLQEADKGNASSSSKWSTSSWS 340
Query: 181 LKTDLQALSSAKVTKSIFEGLPKPGSTRYKASMD 206 LKTDLQA SSA VTKSIFEGLP+ GSTRYKAS D Sbjct: 341 LKTDLQAFSSAMVTKSIFEGLPRSGSTRYKASRD 373
BLAST of Bhi09M000605 vs. ExPASy TrEMBL
Match: A0A6J1GPY6 (uncharacterized protein LOC111456405 OS=Cucurbita moschata OX=3662 GN=LOC111456405 PE=4 SV=1) HSP 1 Score: 253.8 bits (647), Expect = 6.0e-64 Identity = 151/221 (68.33%), Postives = 170/221 (76.92%), Query Frame = 0 Query: 2 TAYRKGEFDHLG------AHPLLASSPNLRGGRHRKSRSFANGFPFENVEFTDVVTAQ-- 61 TAYRKGEF+H G HP+LASS N RHRKSRSFANGF FENVEFTD+++A Sbjct: 163 TAYRKGEFNHGGTTTTTTTHPMLASSHNPHQNRHRKSRSFANGFHFENVEFTDIISASAP 222
Query: 62 NGTTDSIKGGEKRVRRRQKSMADFSTATESISNKTYASNNGDCLSLTRKSLEVRLKGALA 121 +G DS KG EK VRRRQKSMADFS A +S+ NKTY S NG+C S+T K+L+VRL G + Sbjct: 223 SGAIDSTKGSEKLVRRRQKSMADFSIAADSVFNKTYIS-NGECFSMTTKNLDVRLDGG-S 282
Query: 122 RTNAAASNGVTEVSKLTPNLTDDLGGDSFM---------RRSSSTCNLQEVEKGNSSSSM 181 R N A SNGVTEVSKLTP LTDD+GG SFM RRSSSTCNLQ+ EKGNSSSSM Sbjct: 283 RIN-ATSNGVTEVSKLTPILTDDVGGGSFMGSNGMMIGGRRSSSTCNLQDTEKGNSSSSM 342
Query: 182 WSTSSWSLKTDLQALSSAKVTKSIFEGLPKPGSTRYKASMD 206 WST SWSLKTDLQALS+A VTKSIF+GLP+ +TRYKASMD Sbjct: 343 WST-SWSLKTDLQALSTAMVTKSIFDGLPR-STTRYKASMD 378
BLAST of Bhi09M000605 vs. ExPASy TrEMBL
Match: A0A6J1JLY4 (uncharacterized protein LOC111488087 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488087 PE=4 SV=1) HSP 1 Score: 248.4 bits (633), Expect = 2.5e-62 Identity = 148/219 (67.58%), Postives = 167/219 (76.26%), Query Frame = 0 Query: 2 TAYRKGEFDHLG-----AHPLLASSPNLRGGRHRKSRSFANGFPFENVEFTDVVTAQNGT 61 TAYRKGEF+H G HP+LASS N RHRKSRSFA+GF FENVEFTD+++A G Sbjct: 140 TAYRKGEFNHGGTTTITTHPMLASSHNPHQNRHRKSRSFADGFHFENVEFTDIISAPYGA 199
Query: 62 TDSIKGGEKRVRRRQKSMADFSTATESISNKTYASNNGDCLSLTRKSLEVRLKGALARTN 121 DS KG EK VRRRQKSMADFS A +S+ NKTY S NG+ S+T K+L+VRL +R N Sbjct: 200 IDSTKGSEKLVRRRQKSMADFSIAADSVLNKTYIS-NGESFSMTTKNLDVRLDRG-SRIN 259
Query: 122 AAASNGVTEVSKLTPNLTDDLGGDSFM----------RRSSSTCNLQEVEKGNSSSSMWS 181 A SNGVTEVSKLTP LTDD+GG SFM RRSSSTCNLQ+ EKGNSSSSMWS Sbjct: 260 -ATSNGVTEVSKLTPILTDDVGGGSFMGSSNGMMIGGRRSSSTCNLQDTEKGNSSSSMWS 319
Query: 182 TSSWSLKTDLQALSSAKVTKSIFEGLPKPGSTRYKASMD 206 T SWSLKTDLQALS+A VTKSIF+GLP+ +TRYKASMD Sbjct: 320 T-SWSLKTDLQALSTAMVTKSIFDGLPR-STTRYKASMD 353
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
AT5G08200.1 | 2.0e-19 | 39.90 | peptidoglycan-binding LysM domain-containing protein | [more] |
AT5G23130.1 | 2.5e-14 | 37.16 | Peptidoglycan-binding LysM domain-containing protein | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3CEJ2 | 1.3e-79 | 78.50 | uncharacterized protein LOC103499969 OS=Cucumis melo OX=3656 GN=LOC103499969 PE=... | [more] |
A0A5D3CFU3 | 1.3e-79 | 78.50 | Peptidoglycan-binding LysM domain-containing protein, putative isoform 1 OS=Cucu... | [more] |
A0A0A0KBC9 | 1.9e-78 | 75.70 | LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G420740 PE=4 S... | [more] |
A0A6J1GPY6 | 6.0e-64 | 68.33 | uncharacterized protein LOC111456405 OS=Cucurbita moschata OX=3662 GN=LOC1114564... | [more] |
A0A6J1JLY4 | 2.5e-62 | 67.58 | uncharacterized protein LOC111488087 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... | [more] |
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 137..167 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 141..167 |
None | No IPR available | PANTHER | PTHR20932:SF36 | PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN | coord: 3..205 |
IPR045030 | LysM and putative peptidoglycan-binding domain-containing protein 1-4 | PANTHER | PTHR20932 | LOC443603 PROTEIN-RELATED | coord: 3..205 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Bhi09M000605.exon1 | Bhi09M000605.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
cds.Bhi09M000605 | cds.Bhi09M000605 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Bhi09M000605 | Bhi09M000605-protein | polypeptide |
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