Bhi06M000455 (mRNA) Wax gourd (B227) v1

Overview
NameBhi06M000455
TypemRNA
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRibosomal protein S3
Locationchr6: 12311050 .. 12311310 (-)
Sequence length186
RNA-Seq ExpressionBhi06M000455
SyntenyBhi06M000455
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGGTATTCAAAAAAAGACCTAAGAATTTACAGGAAATTTTGTTTTGTTATATAAAATAAGTACCCAAAAAAACAAAGCCACCTTAACGCCCTTGCGCCTGGTCTTTCAAAGCCTTGGGCACAGTTGAATGTAGATATCATGAACGCGAGGTGCAGAATACCAGGCCGAGAAACCCGGGCAACCACTCCCTATGTGCTGATCGCTAGGCATCCAGGGCCGGCGCCCAGCTCCGCTGGAGAGCCTAGCCTGATCTGA

mRNA sequence

ATGAGTGGCCACCTTAACGCCCTTGCGCCTGGTCTTTCAAAGCCTTGGGCACAGTTGAATGTAGATATCATGAACGCGAGGTGCAGAATACCAGGCCGAGAAACCCGGGCAACCACTCCCTATGTGCTGATCGCTAGGCATCCAGGGCCGGCGCCCAGCTCCGCTGGAGAGCCTAGCCTGATCTGA

Coding sequence (CDS)

ATGAGTGGCCACCTTAACGCCCTTGCGCCTGGTCTTTCAAAGCCTTGGGCACAGTTGAATGTAGATATCATGAACGCGAGGTGCAGAATACCAGGCCGAGAAACCCGGGCAACCACTCCCTATGTGCTGATCGCTAGGCATCCAGGGCCGGCGCCCAGCTCCGCTGGAGAGCCTAGCCTGATCTGA

Protein sequence

MSGHLNALAPGLSKPWAQLNVDIMNARCRIPGRETRATTPYVLIARHPGPAPSSAGEPSLI
Homology
[Close]
BLAST of Bhi06M000455 vs. ExPASy TrEMBL
Match: A0A141NB76 (Ribosomal protein S3 OS=Oryza minuta OX=63629 GN=rps3 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.3e-05
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 17  AQLNVDIMNARCRIPGRETRATTPYVLIA-RHPGP-APSSAGEPSLI 62
           AQLNVDIMNAR RIPGRETRA+TP +  +  HPGP  P+    PSLI
Sbjct: 95  AQLNVDIMNARIRIPGRETRASTPLMCRSLAHPGPRRPAPLERPSLI 141

[Close]
BLAST of Bhi06M000455 vs. ExPASy TrEMBL
Match: A0A142D7W9 (Ribosomal protein S3 OS=Oryza minuta OX=63629 GN=rps3 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.3e-05
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 17  AQLNVDIMNARCRIPGRETRATTPYVLIA-RHPGP-APSSAGEPSLI 62
           AQLNVDIMNAR RIPGRETRA+TP +  +  HPGP  P+    PSLI
Sbjct: 95  AQLNVDIMNARIRIPGRETRASTPLMCRSLAHPGPRRPAPLERPSLI 141

The following BLAST results are available for this feature:
BLAST of Bhi06M000455 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi06M000455 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi06M000455 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A141NB769.3e-0565.96Ribosomal protein S3 OS=Oryza minuta OX=63629 GN=rps3 PE=3 SV=1[more]
A0A142D7W99.3e-0565.96Ribosomal protein S3 OS=Oryza minuta OX=63629 GN=rps3 PE=4 SV=1[more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi06G000455Bhi06G000455gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi06M000455.exon2Bhi06M000455.exon2exon
Bhi06M000455.exon1Bhi06M000455.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi06M000455cds.Bhi06M000455_2CDS
cds.Bhi06M000455cds.Bhi06M000455CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi06M000455Bhi06M000455-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0043229 intracellular organelle