Bhi06M000347 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi06M000347
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	BHLH domain-containing protein
Location	chr6: 9251891 .. 9252609 (+)
Sequence length	177
RNA-Seq Expression	Bhi06M000347
Synteny	Bhi06M000347

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAGCAGAAGATCAAGGCAGTCAAGTGCTTCTAGAATCACTGATGACCAAATCATTGAACTCGTCTCCAAGCTTCGCCAACTCGTTCCCGAGATTCGCCCATCGTCGTCCCGACAAGGTACTCCAATTTTCTAGTACTACTGTAATACCTACTACTCTGGAAAAATTCCATCTTTGAAAAACTAGACTTGACCCGGATATCATGGAAAATACTAACCATTCTTTTTTTTTTTTTTTTTTTCCTTTTAATTTTTGAAAAAGAAAAGAAAGAAAAGAATGTGTTTGTTGCTTTAAGTTAAAGATTCTCATTGTCTTGATGGGGGGTTCACATTTGACTCTATTATAAACTTAATTCATGCCACCGATTGATAATGTACGGTCAAAAGAAACTCCATTGGTCTAGTCAATTAAAGAATTTAACAAATTAACATTTAAGCTAAGTAAAGTAATTTAAAAGTTCTTTAATTTTAATTGGGTATGCCACAAACATAATTAAATCAGACCCACTTAATTCAAAATGGGCAAAACAAACAATGCAAAAGTACAACAAAGTGTTTGCTTTTTTGTTTAATTTCATATTTGACTTTATTATATTATTCTTTTTTCATTAATTAATTAATTAATTAATTGGTGTCTTAATTTTACTTTTAATTCCCTCAGGTATCAGCTTCAAAAGTCCTCCAAGAGACTTGCAATTACATAAGAAATTTGCATAG

mRNA sequence

ATGTCTAGCAGAAGATCAAGGCAGTCAAGTGCTTCTAGAATCACTGATGACCAAATCATTGAACTCGTCTCCAAGCTTCGCCAACTCGTTCCCGAGATTCGCCCATCGTCGTCCCGACAAGGTATCAGCTTCAAAAGTCCTCCAAGAGACTTGCAATTACATAAGAAATTTGCATAG

Coding sequence (CDS)

ATGTCTAGCAGAAGATCAAGGCAGTCAAGTGCTTCTAGAATCACTGATGACCAAATCATTGAACTCGTCTCCAAGCTTCGCCAACTCGTTCCCGAGATTCGCCCATCGTCGTCCCGACAAGGTATCAGCTTCAAAAGTCCTCCAAGAGACTTGCAATTACATAAGAAATTTGCATAG

Protein sequence

MSSRRSRQSSASRITDDQIIELVSKLRQLVPEIRPSSSRQGISFKSPPRDLQLHKKFA

Homology

[Close]

BLAST of Bhi06M000347 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 47.8 bits (112), Expect = 3.5e-06
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 2  SSRRSRQ-SSASRITDDQIIELVSKLRQLVPEIRPSSSRQGIS 44
          SSRRSRQ SS+SRI+DDQI +L+SKLRQ +PEIR +     +S
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVS 45

[Close]

BLAST of Bhi06M000347 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 47.0 bits (110), Expect = 6.1e-06
Identity = 26/34 (76.47%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 1  MSSRRSRQ-SSASRITDDQIIELVSKLRQLVPEI 34
          MS+RRSRQ S+ASRI+DDQ+I+LVSKLRQ +PEI
Sbjct: 1  MSNRRSRQTSNASRISDDQMIDLVSKLRQFLPEI 34

[Close]

BLAST of Bhi06M000347 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 45.1 bits (105), Expect = 2.3e-05
Identity = 25/34 (73.53%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 1  MSSRRSRQ-SSASRITDDQIIELVSKLRQLVPEI 34
          MS+RRSRQ SSA RI+D+Q+I+LVSKLRQ++PEI
Sbjct: 1  MSNRRSRQSSSAPRISDNQMIDLVSKLRQILPEI 34

[Close]

BLAST of Bhi06M000347 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 3.0e-05
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 1  MSSR---RSRQSSASRITDDQIIELVSKLRQLVPEIR 35
          MSSR   RSRQS +SRI+DDQI +LVSKL+ L+PE+R
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELR 37

[Close]

BLAST of Bhi06M000347 vs. ExPASy Swiss-Prot
Match: Q9LXG5 (Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 5.0e-05
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 2  SSRRSRQ-SSASRITDDQIIELVSKLRQLVPEIRPSSSRQGIS 44
          SSRRSRQ SS+SRI+DDQI +L+SKLRQ +PEIR +     +S
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVS 45

[Close]

BLAST of Bhi06M000347 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 8.5e-05
Identity = 26/34 (76.47%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 1  MSSRRSRQ-SSASRITDDQIIELVSKLRQLVPEI 34
          MS+RRSRQ S+ASRI+DDQ+I+LVSKLRQ +PEI
Sbjct: 1  MSNRRSRQTSNASRISDDQMIDLVSKLRQFLPEI 34

[Close]

BLAST of Bhi06M000347 vs. ExPASy Swiss-Prot
Match: Q9FLE9 (Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.2e-04
Identity = 25/34 (73.53%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 1  MSSRRSRQ-SSASRITDDQIIELVSKLRQLVPEI 34
          MS+RRSRQ SSA RI+D+Q+I+LVSKLRQ++PEI
Sbjct: 1  MSNRRSRQSSSAPRISDNQMIDLVSKLRQILPEI 34

[Close]

BLAST of Bhi06M000347 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 4.2e-04
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 1  MSSR---RSRQSSASRITDDQIIELVSKLRQLVPEIR 35
          MSSR   RSRQS +SRI+DDQI +LVSKL+ L+PE+R
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELR 37

[Close]

BLAST of Bhi06M000347 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 43.5 bits (101), Expect = 9.4e-04
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 1  MSSR--RSRQSSASRITDDQIIELVSKLRQLVPEIRPSSS 39
          MSSR  RSRQS +SRITD+QI +LVSKL+ L+PE R  S+
Sbjct: 1  MSSRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSN 40

[Close]

BLAST of Bhi06M000347 vs. ExPASy TrEMBL
Match: A0A5A7T970 (Transcription factor PRE6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold33818G00010 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-06
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 1  MSSRRSRQSSASRITDDQIIELVSKLRQLVPEIR 35
          MSSRRSRQSSASRI+DDQIIELVSKLRQLVPEIR
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIR 34

[Close]

BLAST of Bhi06M000347 vs. ExPASy TrEMBL
Match: A0A0A0KXB9 (Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G635950 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-06
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 1  MSSRRSRQSSASRITDDQIIELVSKLRQLVPEIR 35
          MSSRRSRQSSASRI+DDQIIELVSKLRQLVPEIR
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIR 34

[Close]

BLAST of Bhi06M000347 vs. ExPASy TrEMBL
Match: A0A1S3CB29 (transcription factor PRE6 OS=Cucumis melo OX=3656 GN=LOC103498476 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-06
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 1  MSSRRSRQSSASRITDDQIIELVSKLRQLVPEIR 35
          MSSRRSRQSSASRI+DDQIIELVSKLRQLVPEIR
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIR 34

[Close]

BLAST of Bhi06M000347 vs. ExPASy TrEMBL
Match: A0A6P9F8C8 (transcription factor PRE6-like OS=Juglans regia OX=51240 GN=LOC109002575 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 1  MSSRRSRQSSASRITDDQIIELVSKLRQLVPEIR 35
          MSSRRSRQS  SRITDDQII+LVSKLRQLVPEIR
Sbjct: 1  MSSRRSRQSGTSRITDDQIIDLVSKLRQLVPEIR 34

[Close]

BLAST of Bhi06M000347 vs. ExPASy TrEMBL
Match: A0A7N2KZV9 (BHLH domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 1  MSSRRSRQSSASRITDDQIIELVSKLRQLVPEIR 35
          MSSRRSRQS ASRITDDQII+LVSKLRQLVPEI+
Sbjct: 1  MSSRRSRQSGASRITDDQIIDLVSKLRQLVPEIQ 34

The following BLAST results are available for this feature:

BLAST of Bhi06M000347 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15160.1	3.5e-06	62.79	BANQUO 2	[more]
AT3G28857.1	6.1e-06	76.47	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G39860.1	2.3e-05	73.53	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT1G26945.1	3.0e-05	67.57	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of Bhi06M000347 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXG5	5.0e-05	62.79	Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1	[more]
Q9LJX1	8.5e-05	76.47	Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1	[more]
Q9FLE9	3.2e-04	73.53	Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1	[more]
Q8GW32	4.2e-04	67.57	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
B8APB5	9.4e-04	65.00	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]

BLAST of Bhi06M000347 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T970	2.1e-06	97.06	Transcription factor PRE6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KXB9	2.1e-06	97.06	Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G635950 PE=4 SV=1	[more]
A0A1S3CB29	2.1e-06	97.06	transcription factor PRE6 OS=Cucumis melo OX=3656 GN=LOC103498476 PE=4 SV=1	[more]
A0A6P9F8C8	1.4e-05	91.18	transcription factor PRE6-like OS=Juglans regia OX=51240 GN=LOC109002575 PE=4 SV...	[more]
A0A7N2KZV9	1.4e-05	91.18	BHLH domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..58

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi06G000347	Bhi06G000347	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi06M000347.exon1	Bhi06M000347.exon1	exon
Bhi06M000347.exon2	Bhi06M000347.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi06M000347	cds.Bhi06M000347	CDS
cds.Bhi06M000347	cds.Bhi06M000347_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi06M000347	Bhi06M000347-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity