Bhi06M000283 (mRNA) Wax gourd (B227) v1

Overview
NameBhi06M000283
TypemRNA
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionTranscription factor UPBEAT1-like
Locationchr6: 7758097 .. 7758874 (-)
Sequence length778
RNA-Seq ExpressionBhi06M000283
SyntenyBhi06M000283
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATCGTACTGTTACTTAAAGGAAGGTTTCTCCATGGTGTTGGGCGACGAAATTGGCTCCGAGTAATTGGAGACAAACAAGACAAAACAATGAGCTCCAAAACCAACACACTCCCAAATCCTCTCAGAAGTTACCTTAGAAGAAGAAGAACCAAACGATCTTTAACCGATTCCCGCCGTCGCTTCCGCCGCCGTCACTGCCCCCCCCTCCGTTCTCCAATTCCGACCCCCTCACCGCCCTGCTGCTCCGACGTCTCCGCTAAATTGGAGGCCCTGCAGAGCCTCATTCCGCCACAATCCACCGCCGTCCACGGCCAACCCCGCCAAACGGATCAGTTGTTCAAGGAAACCGCCGATTACATTGTTTTATTGAAAACTCAGGTCGTCATTTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCTTGCAGCGACGACTCTCAAAACGCCGTCGTTTCATAGTTTCTCTTTCTCTCCTTTTTTTTTTTCCCTCTTTTCTTTTTTCTTTTTTTTTTTTTAACTTCTTGTAATTATGAGAAAAAAATAAATTAAAAAAATTGAAAGAAAGAGTCCTGTTGTCTATATATATATATTTTTTTTTAAGTATAAATGTTTTAACTATAGATCTCATGGTTATTAACGCACTCAATTTAATCATCTTGTCTATGTCTTGTTTCTTCTGTCAATGATGGTTTATAGTACAAATTTTATGGAATAGGTAAATTGAAGGTTTATAGTACAAATTTTATGTCAATTGAGTCGTATTCATTTTGACGAAGTTT

mRNA sequence

TTATCGTACTGTTACTTAAAGGAAGGTTTCTCCATGGTGTTGGGCGACGAAATTGGCTCCGAGTAATTGGAGACAAACAAGACAAAACAATGAGCTCCAAAACCAACACACTCCCAAATCCTCTCAGAAGTTACCTTAGAAGAAGAAGAACCAAACGATCTTTAACCGATTCCCGCCGTCGCTTCCGCCGCCGTCACTGCCCCCCCCTCCGTTCTCCAATTCCGACCCCCTCACCGCCCTGCTGCTCCGACGTCTCCGCTAAATTGGAGGCCCTGCAGAGCCTCATTCCGCCACAATCCACCGCCGTCCACGGCCAACCCCGCCAAACGGATCAGTTGTTCAAGGAAACCGCCGATTACATTGTTTTATTGAAAACTCAGGTCGTCATTTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCTTGCAGCGACGACTCTCAAAACGCCGTCGTTTCATAGTTTCTCTTTCTCTCCTTTTTTTTTTTCCCTCTTTTCTTTTTTCTTTTTTTTTTTTTAACTTCTTGTAATTATGAGAAAAAAATAAATTAAAAAAATTGAAAGAAAGAGTCCTGTTGTCTATATATATATATTTTTTTTTAAGTATAAATGTTTTAACTATAGATCTCATGGTTATTAACGCACTCAATTTAATCATCTTGTCTATGTCTTGTTTCTTCTGTCAATGATGGTTTATAGTACAAATTTTATGGAATAGGTAAATTGAAGGTTTATAGTACAAATTTTATGTCAATTGAGTCGTATTCATTTTGACGAAGTTT

Coding sequence (CDS)

ATGAGCTCCAAAACCAACACACTCCCAAATCCTCTCAGAAGTTACCTTAGAAGAAGAAGAACCAAACGATCTTTAACCGATTCCCGCCGTCGCTTCCGCCGCCGTCACTGCCCCCCCCTCCGTTCTCCAATTCCGACCCCCTCACCGCCCTGCTGCTCCGACGTCTCCGCTAAATTGGAGGCCCTGCAGAGCCTCATTCCGCCACAATCCACCGCCGTCCACGGCCAACCCCGCCAAACGGATCAGTTGTTCAAGGAAACCGCCGATTACATTGTTTTATTGAAAACTCAGGTCGTCATTTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCTTGCAGCGACGACTCTCAAAACGCCGTCGTTTCATAG

Protein sequence

MSSKTNTLPNPLRSYLRRRRTKRSLTDSRRRFRRRHCPPLRSPIPTPSPPCCSDVSAKLEALQSLIPPQSTAVHGQPRQTDQLFKETADYIVLLKTQVVILQKLVDFFGSACSDDSQNAVVS
Homology
BLAST of Bhi06M000283 vs. TAIR 10
Match: AT5G39240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29370.1); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-09
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 56  SAKLEALQSLIPPQSTAVHGQPRQ------------TDQLFKETADYIVLLKTQVVILQK 115
           S KL+AL+SL+PP S     Q RQ            T+QLF+ETADYIV L+ QVV+LQK
Sbjct: 31  SEKLQALKSLLPPPSKMTE-QSRQDAYVEEDSSVGETEQLFQETADYIVRLRGQVVVLQK 90

Query: 116 LVDFFGSACSDDSQNAVVS 123
           L++ +GS  SD  ++  VS
Sbjct: 91  LIEIYGS--SDQKEDNFVS 106

BLAST of Bhi06M000283 vs. TAIR 10
Match: AT3G29370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 8.8e-07
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 0

Query: 23  RSLTDSRRRFRRRHCPPLRSPIPTPSPPCCSD--------VSAKLEALQSLIPPQSTAVH 82
           R+L     R RRR     R+ +      CC +        V  KL AL+SL+PP      
Sbjct: 2   RTLKTQTTRGRRRANVSSRTRV---LHTCCGNGSSDGGKTVMEKLLALKSLLPPPVNVGG 61

Query: 83  GQPRQTDQLFKETADYIVLLKTQVVILQKLVDFFGSACSDDSQNAVV 122
           G   +T++LF+ETA+YIV L+TQVV+L+KL++ + ++ SD  ++ V+
Sbjct: 62  G---ETEELFQETAEYIVKLRTQVVVLKKLIEIYDNS-SDQKKDVVL 101

BLAST of Bhi06M000283 vs. ExPASy TrEMBL
Match: A0A5D3BNP5 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002510 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 9.1e-36
Identity = 95/122 (77.87%), Postives = 101/122 (82.79%), Query Frame = 0

Query: 1   MSSKTNTLPNPLRSYLRRRRTKRSLTDSRRRFRRRHCPPLRSPIPTPSPPCCSDVSAKLE 60
           MSSKTNTLPNPLR+Y RRRRTKRSLT SRRRF RRH    R   P  S   CS+VS KLE
Sbjct: 1   MSSKTNTLPNPLRNY-RRRRTKRSLTHSRRRFHRRHNAGCR---PGDSTLGCSEVSTKLE 60

Query: 61  ALQSLIPPQSTAVHGQPRQTDQLFKETADYIVLLKTQVVILQKLVDFFGSACSDDSQNAV 120
           ALQSLIPPQS A HGQPRQ D+LFK+TADYIV+LKTQVVILQKLVDFFGSACS DS +AV
Sbjct: 61  ALQSLIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACS-DSPDAV 117

Query: 121 VS 123
           VS
Sbjct: 121 VS 117

BLAST of Bhi06M000283 vs. ExPASy TrEMBL
Match: A0A6J1JTK8 (uncharacterized protein LOC111489609 OS=Cucurbita maxima OX=3661 GN=LOC111489609 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.2e-16
Identity = 71/119 (59.66%), Postives = 74/119 (62.18%), Query Frame = 0

Query: 1   MSSKTNTLPNPLRSYLRRRRTKRSLTDSRRRFRRRHCPPLRSPIPTPSPPCCS------- 60
           M+ KT TL N       R RTKRSL DS  R    H         T S PC S       
Sbjct: 1   MTPKTYTLTN------LRTRTKRSLPDSAVRAPNPH----EYGETTSSSPCSSSSDDDDD 60

Query: 61  -DVSAKLEALQSLIPPQSTAVHGQPRQTDQLFKETADYIVLLKTQVVILQKLVDFFGSA 112
            DVSAKLEALQSLIP QS     + RQT+QLFKETADYIVLLKTQVVILQKLVDFFGSA
Sbjct: 61  DDVSAKLEALQSLIPAQS----AEARQTEQLFKETADYIVLLKTQVVILQKLVDFFGSA 105

BLAST of Bhi06M000283 vs. ExPASy TrEMBL
Match: A0A7J0EEI9 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_03g0016470 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.3e-10
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 0

Query: 18  RRRTKRSLTDSRRRFRRRHCPPLRSPIPTPSPPCCSDVSAKLEALQSLIPPQSTAVHGQP 77
           RR    + T   RR  +R C   + P PT +   C+ +S KLEAL+SLIP    A  G+ 
Sbjct: 4   RRNNPTTRTMGTRRRLKRICRAEKRPRPTVNGDPCASLSDKLEALKSLIP----ATDGE- 63

Query: 78  RQTDQLFKETADYIVLLKTQVVILQKLVDFFGSACSDDSQNAV 121
           R  D+LF+ETADYIVLLKTQ++ILQ+LVDF+    S+ +QNAV
Sbjct: 64  RNPDELFQETADYIVLLKTQILILQRLVDFY---ASNQNQNAV 98

BLAST of Bhi06M000283 vs. ExPASy TrEMBL
Match: A0A5N6QW57 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007655 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.0e-10
Identity = 51/96 (53.12%), Postives = 66/96 (68.75%), Query Frame = 0

Query: 19  RRTKRSL---TDSRRRFRRRHCPPLRSPIPTPSPPCCSDVSAKLEALQSLIPPQSTAVHG 78
           RRT+R L   T +RRR + R C   RS         C+ VS KLEAL++LIP    A +G
Sbjct: 13  RRTRRKLTRRTSTRRRLQARPCRARRS--FNNGGRTCAKVSDKLEALKNLIP----AHNG 72

Query: 79  QPRQTDQLFKETADYIVLLKTQVVILQKLVDFFGSA 112
           +  + DQLFKETA+YIVLL+TQVVILQ+LV+F+GS+
Sbjct: 73  ETVKPDQLFKETAEYIVLLRTQVVILQRLVEFYGSS 102

BLAST of Bhi06M000283 vs. ExPASy TrEMBL
Match: A0A2C9WB72 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G054200 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.0e-10
Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = 0

Query: 12  LRSYLRRRRTKRSLTDSRRRFRRRHCPPLRSPIPTPSPPCCSDVSAKLEALQSLIPPQST 71
           L+   RR   + S++  RR + RR C P RS   T +    + VSAKLE L++LIP    
Sbjct: 12  LKKTPRRSLRRTSISRRRRLYARRPCKPKRSWRTTTT--TTTKVSAKLETLKNLIP---- 71

Query: 72  AVHGQPRQTDQLFKETADYIVLLKTQVVILQKLVDFFGSACSDDSQNAV 121
           A +G+  + + LF+ETADYIVLLKTQV +LQ+LV+F+GS  ++   NAV
Sbjct: 72  AHNGEIIKAEHLFQETADYIVLLKTQVFVLQRLVEFYGSTTTEAETNAV 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT5G39240.12.5e-0948.10unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G29370.18.8e-0736.45unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BNP59.1e-3677.87Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A6J1JTK86.2e-1659.66uncharacterized protein LOC111489609 OS=Cucurbita maxima OX=3661 GN=LOC111489609... [more]
A0A7J0EEI92.3e-1049.51Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_03g0016470 PE=4 SV=1[more]
A0A5N6QW573.0e-1053.13Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007655 PE=4 SV=1[more]
A0A2C9WB723.0e-1045.87Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G054200 PE=4 SV=... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49
NoneNo IPR availablePANTHERPTHR33124:SF70SUBFAMILY NOT NAMEDcoord: 18..120
IPR044660Transcription factor IBH1-likePANTHERPTHR33124TRANSCRIPTION FACTOR IBH1-LIKE 1coord: 18..120
IPR044549Transcription factor IBH1-like, bHLH domainCDDcd11444bHLH_AtIBH1_likecoord: 52..105
e-value: 1.04942E-12
score: 56.4768

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi06G000283Bhi06G000283gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi06M000283.exon1Bhi06M000283.exon1exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi06M000283.utr3p1Bhi06M000283.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi06M000283cds.Bhi06M000283CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi06M000283.utr5p1Bhi06M000283.utr5p1five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi06M000283Bhi06M000283-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated