Bhi06M000179 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi06M000179
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	RNA-binding protein 7-like isoform X2
Location	chr6: 4632367 .. 4636929 (-)
Sequence length	2008
RNA-Seq Expression	Bhi06M000179
Synteny	Bhi06M000179

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAAAGGGAAAAAGAAAAAAAAAACAAAAGAACTAGAGGTTCATTGGCTGACTGAATTTGCTCTTTCTCCTCCCCCTTTCTGCTTGCTTTCTGAAACTTCAGTTTAGGGTTTTGCTTTTGGAGTTGCAGAACAATCATGTCAGGAAGATCAAATGGCTGCACCGTTTACGTAGGTATGTTCATTGATTTGTCTACCCTAATTCGTTTTGAACTTTTTCGTTTTCCTCTCATGAGATTTCTGCTGTTTGCGTTTTAAGCTTCGTGTTTTTACTTCCGTGAAGTTCCGTTTGAAAATTATGCTTTCGGGTGGTCAATTTTGTAAGGAGTATGCTTATTTTCTTCTATCATGTTCTACGATTTGATTTATAGGACACAAAACATATTTCTTGATTGGAAAAGCTCTGCTTAGACATTTGGCGGGTTCATAATTGAACAAAAAGGATTGCATTGTTTGCTGGATTTCTTCCTTCCCAACTTTTTTTTTCCTCTCTTGTAAATTCGTTTTACTTCTGTTCATAACATGCGTGATTTCTTTGCTTTTAGGCGAAGAGGGTTGGAAGTTAAACTTACTTCGTTTTTGTTTTTCTTAGATCTCTTAGATTATCTTCGTTTTTGCTTAACTGGTTCAATCTTAATTTTCACTTACCCCATCATCTTTTATCTGCTTCTGTGTAGGCTTCCTCCATTTGAGTATTGATGCCAGTTTGTTCTTTAATATTTATTTAACATAACTAGATGTGCAACGAACTTATTCTTTCGGGGAACTTTTCGTTCCCTTTAATATTTTGATACAACGTTCGTTATGTATTAAAGTTTTTAGGATGCAACCTATCATTTTGAGTTTAAGATGCCACATTTTCTTATGAGTCTGATTTTGTTACTTTTTTTTCACTTTCTATAGGTAATTTGGATGAAAGGATAAGTGATAGGGTTCTTTATGATATTCTAATCCAAGCTGGGCGAGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGTAAACCCAAAGGTTTTGCTTTTGTAGTGTATGAAAGTGAGGAGATTACCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGACTCTTTATAACCGTACCCTGAAGTTTGCAGTATGTAATTATTGTTTCTTTCTCATTGCAAATTCTTCATGGTTCCCTTTGTTTCTTTTATCTTGGTTTTTCTTGATCAACTTTGTTTCCAAACTTATACATATTGTTTTTATATTTATTTATTCATGTCATATACCATCTCTTCTTATTTGACGGATTTTGATGAATACCTCACTTTTAGATATATATTATTAGTCTTTTAAGATGCACGTTGGATTTGAAATTTTAGTTTTCTTGACTTCATAACAATAAAATTTGATGGACTTAATTTTAGTATATTGCGTAACTTTTTTGAGGTTTTAGAAATTACATTCCAATCATATGGTTTTGTTCTTGTTATTTACCTAACTTGCGTTTAGATGCAAACCTTGTAATCATAATTAATTGACGGGAAGAATCAAGATATTCCTGGATCATGATGAATTTAATCTAGGTTAGTTCATGTCACCAGAAGTTTAAATGACTTGGTTGGAAAACCTTTGGCTTCTGCATTAGTACATTATTGATAAACAAAAGAAAAAAGGGAAGATAGAAATTATCACATCACTATGATTACTAATGACTTTGTTGAAAAACAGGTGAACTTATTGAAGTTTGGAGAACGAAGATAGATGCTAAAACATTATTAGAAAAACAAAACAAGTTTCAATCTATAATTTTATATATTTAAAATGATATCTATTTAGTTTCCTAGAAAAATATCTTTTAATATGATTTTGGACGAAATAGGACAACATAAAAATGAAGTGCTAGATAGAAATGTAAAGATTCTTTTCCTGAATATATATTTATTATAGATTATTTCTTTTAATGTATGATTATTTACTATGTGGTTTCATACTTCAATTTTATTAATTAGATGATTGTGCAATCTTCCATTGTCAGATTTCATTATGTAGCGAGTCATTAAATTATGGGAATGATTCATAGGTTTCGACTTTGTGCAAGCAGGTATCTGGGCAAGACAAGTCTTCACCTAGTAGTAGTGCAATCACTTCATCATCAAATGTATCTCATAAATCGAGGTCACATATTGTTCTAGGTTACTCTGAAATATCTCAGTATTCCAGTCACTTGTCAACATCGTGCAGGTTCTCAACGTACCCTGAAGACCATGTAGAAGGTGATTTTACCTTTCTTTATATTTGTCTTTGCATTGTTAGTTTCACTAAGAATTGTGTATTTTTATTTTCTTGACCTTTCCCACACTAGTTCAACAAAAATTTATTTCTTTTATTCAGCGCTTCTTTACCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGATATTCTGGAACAACTTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGTTACAAGTTATCCAGTATACTATCATTCTTATGATCTTTTGAAGTAATGCAGCTAGTGCCTTCCATTTTTGGTAATCATAATGGTAATTTAAATCTTAGATAAAGTAGTATTGCTTAGTTGGATTAGGATGCAAATGGGTTAGTGGTGAATGATATGATATTTGCTATGGAACATGCTAGTTTATGTTATTGAATACAGTCATTTTGTTAGGTGCACATGTTCATATGATTTTGGATGTGTCATCATAGTTGATACACTAATTAAAGTATTGTAACCTATTTTATTACGTTGTCAGTTTTTGTTATTGTATATTGAGTATTTAGTTATTTATGAAGTGTTTTACTTGAGCAAATAATATTTAATTATCTGTTTCTCTTCAAGAATAATTTTGAAAACAGAAGAAAAATTATTATCAAGGATTACTTTTTGTTTATCTTGTTCCTGTGCTTTTATTGTTTTGAGGCTTCTAATTCTTGGCTTCATCTGAAATAAATGTATTGCATGGCGTGCTTGAATTTTCAAGACGCAATTTCTTTGAAAAGAATTAATGACTAAAAGTTTACTTTGAGAAAGACAGTATTTACTAGTCCTGAGAGCCATTCATTTTTTTGTGAGATCGTAGATAAAACATTTGGTGATCAGGCTAGTGGCAGTTCTATCAGAGGATCATTATAATGATTTCTATCAAAATTCAAGAATCTAAATCCCTCCTTTATCTTATTTGGGCTCGAAGTTCCTATCTGAAGTTGTCCATTAGTTTTACTATTCTTTGTATCATAATATGAATTTGTTCATTTCCTTTTATTTCTACCCTGTTTATTGGTTGTGAAACCTGTATTTGATGTAATATGTATACATTTGTTTGTATGTGTATAATAAATGATCTTTCTTTGGCTGCCTTATAAAATTTGGTACAACTTTGATATAGGCGTATAGCTTTAGTTGGCAAGTAGTGTTTTTAAGTGAAATCCTTTAGTATGAAGCACTAGTGGAGAAAAAAAACATTCAAGTGCTTTGTCCTAAAGGTACGTCAAAGAGTTTACATTTTCTTTTTCAAACAAGAAGTGAAAATAGAATTAAAAGCATCAATACCCTAATGGATAGGACAAAGTTCCTCTTAACCTATTGTTAGGTGATATAATATTAAATTTATTTTCACTCATTGAGTTTAAGCTTTTGGGTCCATCGGTAGTTTAACATGGTGGTAGTCTAGGAGGTTTTGTATTTAAACCCGGTTTTGTATTTAAACCCCTGCAATGTTATTTCTTCTTCAATTAATATTGATTTCCACTTGTTATGTCTTCTACATATTTCAAGCCCACAAGTGAGGGGAGTGTTAGATGATATAATATTAAATTTATTTTCACCCATTAGCTCAAGTTTTTGGGATAATTGGTGATTTAAGGACTTATGAATTATGATAGTGTTAAACTTTTGAGTCAATCGGTGATTTAAGACTTATAATGGTGGTGTAGAATACATATGAGTTTGTTTCTGTATGACATTTATATGTTTATAGTTTTGAATATGTATGTGATGATATTGTCAATTAAAGATACTTGGAAAGATGTGAACAAGTGTGGGAGGCAGAGGCTGGCTGTAATCTGATGAAAATATGGAGCTTTGAAATGAATGATGAGAGAACAGAGAATGTGATAGATGGTTGGAGGCAGAGGTTGAAGCATATAGGGAATTTGATTGATTTTTTGGTGGGCTCTAGTGTTATGTTGTTTTGTACTTGATTTTGTGCCACCACTATGAATTTGAATTGTATTGAAGTAGAGTTGCCTATCAGTGTAATTAGAGTAGCATAGTTCCTCAGGTGTAGGTGTATAGAGAATTCGTGGTTCTTGTCTAAAGAGAAGCATATTATTGTAATCTCGGTTAGCAATCAAAACTTCAACTGGTAGCAACCCGCTGGTTGCGCTGATTGTTGGATTATAAAGGAAATCTCGATCTCATATTGGTCATTGGTACGGGTTCAGGAATCTCAATCTCTTTCTTTCTCCTTTTGTTTTTGTGAAGAATATGATGAAATGTAAAGCCGAGCATGTGGGTGATTTTGTATCAG

mRNA sequence

AAATAAAGGGAAAAAGAAAAAAAAAACAAAAGAACTAGAGGTTCATTGGCTGACTGAATTTGCTCTTTCTCCTCCCCCTTTCTGCTTGCTTTCTGAAACTTCAGTTTAGGGTTTTGCTTTTGGAGTTGCAGAACAATCATGTCAGGAAGATCAAATGGCTGCACCGTTTACGTAGGTAATTTGGATGAAAGGATAAGTGATAGGGTTCTTTATGATATTCTAATCCAAGCTGGGCGAGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGTAAACCCAAAGGTTTTGCTTTTGTAGTGTATGAAAGTGAGGAGATTACCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGACTCTTTATAACCGTACCCTGAAGTTTGCAGTATCTGGGCAAGACAAGTCTTCACCTAGTAGTAGTGCAATCACTTCATCATCAAATGTATCTCATAAATCGAGGTCACATATTGTTCTAGGTTACTCTGAAATATCTCAGTATTCCAGTCACTTGTCAACATCGTGCAGGTTCTCAACGTACCCTGAAGACCATGTAGAAGATAAAACATTTGGTGATCAGGCTAGTGGCAGTTCTATCAGAGGATCATTATAATGATTTCTATCAAAATTCAAGAATCTAAATCCCTCCTTTATCTTATTTGGGCTCGAAGTTCCTATCTGAAGTTGTCCATTAGTTTTACTATTCTTTGTATCATAATATGAATTTGTTCATTTCCTTTTATTTCTACCCTGTTTATTGGTTGTGAAACCTGTATTTGATGTAATATGTATACATTTGTTTGTATGTGTATAATAAATGATCTTTCTTTGGCTGCCTTATAAAATTTGGTACAACTTTGATATAGGCGTATAGCTTTAGTTGGCAAGTAGTGTTTTTAAGTGAAATCCTTTAGTATGAAGCACTAGTGGAGAAAAAAAACATTCAAGTGCTTTGTCCTAAAGGTACGTCAAAGAGTTTACATTTTCTTTTTCAAACAAGAAGTGAAAATAGAATTAAAAGCATCAATACCCTAATGGATAGGACAAAGTTCCTCTTAACCTATTGTTAGGTGATATAATATTAAATTTATTTTCACTCATTGAGTTTAAGCTTTTGGGTCCATCGGTAGTTTAACATGGTGGTAGTCTAGGAGGTTTTGTATTTAAACCCGGTTTTGTATTTAAACCCCTGCAATGTTATTTCTTCTTCAATTAATATTGATTTCCACTTGTTATGTCTTCTACATATTTCAAGCCCACAAGTGAGGGGAGTGTTAGATGATATAATATTAAATTTATTTTCACCCATTAGCTCAAGTTTTTGGGATAATTGGTGATTTAAGGACTTATGAATTATGATAGTGTTAAACTTTTGAGTCAATCGGTGATTTAAGACTTATAATGGTGGTGTAGAATACATATGAGTTTGTTTCTGTATGACATTTATATGTTTATAGTTTTGAATATGTATGTGATGATATTGTCAATTAAAGATACTTGGAAAGATGTGAACAAGTGTGGGAGGCAGAGGCTGGCTGTAATCTGATGAAAATATGGAGCTTTGAAATGAATGATGAGAGAACAGAGAATGTGATAGATGGTTGGAGGCAGAGGTTGAAGCATATAGGGAATTTGATTGATTTTTTGGTGGGCTCTAGTGTTATGTTGTTTTGTACTTGATTTTGTGCCACCACTATGAATTTGAATTGTATTGAAGTAGAGTTGCCTATCAGTGTAATTAGAGTAGCATAGTTCCTCAGGTGTAGGTGTATAGAGAATTCGTGGTTCTTGTCTAAAGAGAAGCATATTATTGTAATCTCGGTTAGCAATCAAAACTTCAACTGGTAGCAACCCGCTGGTTGCGCTGATTGTTGGATTATAAAGGAAATCTCGATCTCATATTGGTCATTGGTACGGGTTCAGGAATCTCAATCTCTTTCTTTCTCCTTTTGTTTTTGTGAAGAATATGATGAAATGTAAAGCCGAGCATGTGGGTGATTTTGTATCAG

Coding sequence (CDS)

ATGTCAGGAAGATCAAATGGCTGCACCGTTTACGTAGGTAATTTGGATGAAAGGATAAGTGATAGGGTTCTTTATGATATTCTAATCCAAGCTGGGCGAGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGTAAACCCAAAGGTTTTGCTTTTGTAGTGTATGAAAGTGAGGAGATTACCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGACTCTTTATAACCGTACCCTGAAGTTTGCAGTATCTGGGCAAGACAAGTCTTCACCTAGTAGTAGTGCAATCACTTCATCATCAAATGTATCTCATAAATCGAGGTCACATATTGTTCTAGGTTACTCTGAAATATCTCAGTATTCCAGTCACTTGTCAACATCGTGCAGGTTCTCAACGTACCCTGAAGACCATGTAGAAGATAAAACATTTGGTGATCAGGCTAGTGGCAGTTCTATCAGAGGATCATTATAA

Protein sequence

MSGRSNGCTVYVGNLDERISDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFVVYESEEITNYAVKLFSGLVTLYNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSHIVLGYSEISQYSSHLSTSCRFSTYPEDHVEDKTFGDQASGSSIRGSL

Homology

[Close]

BLAST of Bhi06M000179 vs. TAIR 10
Match: AT4G10110.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-37
Identity = 87/163 (53.37%), Postives = 114/163 (69.94%), Query Frame = 0


Query: 1   MSGRSNGCTVYVGNLDERISDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFVVYESEE 60
           MSG SN CTVY+GN+DER+SDRVLYDI+IQAGRV+DLHIPRDKE+ KPKGFAF  YE+EE
Sbjct: 1   MSGTSN-CTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEE 60

Query: 61  ITNYAVKLFSGLVTLYNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSHIV-------L 120
           I +YAVKLFSGLV+LYNRTLKFA+SGQDK        ++S+N  H++R   +        
Sbjct: 61  IADYAVKLFSGLVSLYNRTLKFAISGQDKLQ------SNSANSGHRARPQSLAFEHSDRA 120

Query: 121 GYSEISQYSSHLSTSCRFSTYPEDHVEDKTFGDQASGSSIRGS 157
            Y  + ++SS L +    S  P D+ ++      ++G+S+  S
Sbjct: 121 AYHHLERFSSQLISPP--SPLPLDYTQEPPPPGVSNGASLEYS 154

[Close]

BLAST of Bhi06M000179 vs. TAIR 10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 71.2 bits (173), Expect = 8.1e-13
Identity = 30/88 (34.09%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 4   RSNGCTVYVGNLDERISDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFVVYESEEITN 63
           R+   TVYVG LD ++S+ +L+++ +QAG VV++++P+D+ +   + + F+ Y SEE  +
Sbjct: 21  RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80

Query: 64  YAVKLFSGLVTLYNRTLKFAVSGQDKSS 92
           YA+K+ + ++ L+ + ++   + QDK S
Sbjct: 81  YAIKVLN-MIKLHGKPIRVNKASQDKKS 107

[Close]

BLAST of Bhi06M000179 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-09
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 2   SGRSNGCTVYVGNLDERISDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFVVYESEEI 61
           SG  +G  VYVGNL   + D  L  +  + G+VV+  +  D++SG+ KGF FV Y+S + 
Sbjct: 198 SGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257

Query: 62  TNYAVKLFSG 72
              A+K   G
Sbjct: 258 VQNAIKSLDG 267

[Close]

BLAST of Bhi06M000179 vs. TAIR 10
Match: AT3G47120.1 (RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 54.7 bits (130), Expect = 7.9e-08
Identity = 34/97 (35.05%), Postives = 49/97 (50.52%), Query Frame = 0


Query: 6   NGCTVYVGNLDERISDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFVVYESEEITNYA 65
           N   VYVG +   +++  L  +  Q G +VD+++ RDK +GK KGFAF+ YE +  T  A
Sbjct: 34  NSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILA 93

Query: 66  VKLFSGLVTLYNRTLKFAVSGQDKSSPSSSAITSSSN 103
           V   +G + L  RT+K    G  K        T   N
Sbjct: 94  VDNLNGALVL-GRTIKVDHCGAYKKHEEEDEETRRQN 129

[Close]

BLAST of Bhi06M000179 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-06
Identity = 34/106 (32.08%), Postives = 57/106 (53.77%), Query Frame = 0


Query: 5   SNGCTVYVGNLDERISDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFVVYESEEITNY 64
           S+  ++ V N+  R +   LY +  + G+VVD+ IPRD+ +G  +GFAFV Y+ ++  + 
Sbjct: 13  SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72

Query: 65  AVKLFSG-LVTLYNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRS 110
           AV+   G +V     T++FA  G +    S   +      S +SRS
Sbjct: 73  AVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRS 118

[Close]

BLAST of Bhi06M000179 vs. ExPASy Swiss-Prot
Match: Q15427 (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.6e-13
Identity = 32/81 (39.51%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MSGRSNGCTVYVGNLDERISDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFVVYESEE 60
          +S R+   TVYVG LDE++S+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ FV + SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 ITNYAVKLFSGLVTLYNRTLK 82
            +YA+K+ + ++ LY + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of Bhi06M000179 vs. ExPASy Swiss-Prot
Match: Q8QZY9 (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.6e-13
Identity = 32/81 (39.51%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MSGRSNGCTVYVGNLDERISDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFVVYESEE 60
          +S R+   TVYVG LDE++S+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ FV + SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 ITNYAVKLFSGLVTLYNRTLK 82
            +YA+K+ + ++ LY + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of Bhi06M000179 vs. ExPASy Swiss-Prot
Match: Q6AYL5 (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.6e-13
Identity = 32/81 (39.51%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MSGRSNGCTVYVGNLDERISDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFVVYESEE 60
          +S R+   TVYVG LDE++S+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ FV + SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 ITNYAVKLFSGLVTLYNRTLK 82
            +YA+K+ + ++ LY + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of Bhi06M000179 vs. ExPASy Swiss-Prot
Match: Q09442 (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-12
Identity = 29/78 (37.18%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 4  RSNGCTVYVGNLDERISDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFVVYESEEITN 63
          R+   T+YVG LDE++S+ +L+++++QAG VV +++P+D+ +   +GF FV +  EE  +
Sbjct: 9  RNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68

Query: 64 YAVKLFSGLVTLYNRTLK 82
          YA+K+ + ++ LY + +K
Sbjct: 69 YAIKILN-MIKLYGKPIK 85

[Close]

BLAST of Bhi06M000179 vs. ExPASy Swiss-Prot
Match: O14102 (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap49 PE=3 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-11
Identity = 30/86 (34.88%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 4  RSNGCTVYVGNLDERISDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFVVYESEEITN 63
          R+   T+Y+GNLDE+++D +L+++ +QAG VV++HIPRD+      GF F  +  E+   
Sbjct: 7  RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66

Query: 64 YAVKLFSGLVTLYNRTLKFAVSGQDK 90
          YA ++ +  V L+ + ++   + QD+
Sbjct: 67 YACQILN-QVKLFGKPIRVNRASQDR 91

[Close]

BLAST of Bhi06M000179 vs. ExPASy TrEMBL
Match: A0A6J1IDF5 (RNA-binding protein 7-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472063 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.8e-66
Identity = 135/159 (84.91%), Postives = 147/159 (92.45%), Query Frame = 0


Query: 1   MSGR-SNGCTVYVGNLDERISDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFVVYESE 60
           MSGR SN CT+YVGNLDER++D+VLYDILIQAGRVVDLH+PRDKESGKPKGFAF  YE+E
Sbjct: 1   MSGRSSNRCTLYVGNLDERVTDKVLYDILIQAGRVVDLHMPRDKESGKPKGFAFAEYENE 60

Query: 61  EITNYAVKLFSGLVTLYNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSHIVLGYS-EI 120
           +ITNYA+KLFSGLVTL+NRTLKFAVSGQDK SPSSSAITSSSN+SHKSRSHIV  YS E 
Sbjct: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSHIVSNYSNET 120

Query: 121 SQYSSHLSTSCRFSTYPEDHVEDKTFGDQASGSSIRGSL 158
           SQYS+ LSTSCRFS YPE+H EDKTFGDQASGSSIRGSL
Sbjct: 121 SQYSNRLSTSCRFSAYPENHQEDKTFGDQASGSSIRGSL 159

[Close]

BLAST of Bhi06M000179 vs. ExPASy TrEMBL
Match: A0A6J1EX61 (RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.4e-59
Identity = 123/157 (78.34%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 1   MSGRSNGCTVYVGNLDERISDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFVVYESEE 60
           MSGRSNGCT+Y+GNLDER+SDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AF  YE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  ITNYAVKLFSGLVTLYNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSHIVLGYS-EIS 120
           ITNYAVKLFSGLVTL+NRTLKFAVSGQDK SPSSSAITSSSN+SHKSRS IV GYS EIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 QYSSHLSTSCRFSTYPEDHVEDKTFGDQASGSSIRGS 157
            YS+ LS SCRFS YPE+HVE   +    + S+  GS
Sbjct: 121 SYSNRLSNSCRFSAYPENHVEAPPYPGLVNQSNGYGS 157

[Close]

BLAST of Bhi06M000179 vs. ExPASy TrEMBL
Match: A0A6J1I8J0 (RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471946 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 7.6e-59
Identity = 122/157 (77.71%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 1   MSGRSNGCTVYVGNLDERISDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFVVYESEE 60
           MSGRSNGCT+Y+GNLDER+SDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AF  YE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  ITNYAVKLFSGLVTLYNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSHIVLGYS-EIS 120
           ITNYAVKLFSGLVTL+NRTLKFAVSGQDK SPSSSAITSSSN+SHKSRS IV GYS EIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 QYSSHLSTSCRFSTYPEDHVEDKTFGDQASGSSIRGS 157
            YS+ LS SCRFS YPE+H+E   +    + S+  GS
Sbjct: 121 SYSNRLSNSCRFSAYPENHLEAPPYPGLVNQSNGYGS 157

[Close]

BLAST of Bhi06M000179 vs. ExPASy TrEMBL
Match: A0A6J1I7S0 (RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472063 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.6e-56
Identity = 118/142 (83.10%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 1   MSGR-SNGCTVYVGNLDERISDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFVVYESE 60
           MSGR SN CT+YVGNLDER++D+VLYDILIQAGRVVDLH+PRDKESGKPKGFAF  YE+E
Sbjct: 1   MSGRSSNRCTLYVGNLDERVTDKVLYDILIQAGRVVDLHMPRDKESGKPKGFAFAEYENE 60

Query: 61  EITNYAVKLFSGLVTLYNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSHIVLGYS-EI 120
           +ITNYA+KLFSGLVTL+NRTLKFAVSGQDK SPSSSAITSSSN+SHKSRSHIV  YS E 
Sbjct: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSHIVSNYSNET 120

Query: 121 SQYSSHLSTSCRFSTYPEDHVE 141
           SQYS+ LSTSCRFS YPE+H E
Sbjct: 121 SQYSNRLSTSCRFSAYPENHQE 142

[Close]

BLAST of Bhi06M000179 vs. ExPASy TrEMBL
Match: A0A0A0KXV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648670 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.3e-55
Identity = 119/141 (84.40%), Postives = 130/141 (92.20%), Query Frame = 0


Query: 1   MSGRSNGCTVYVGNLDERISDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFVVYESEE 60
           MSG SN CTVYVGNLDER+SDRVLYDILIQAGRVVDLHIPRDK++GKPKGFAF VYESEE
Sbjct: 291 MSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEE 350

Query: 61  ITNYAVKLFSGLVTLYNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSHIVLGYS-EIS 120
           I NYAVKLFSGLV+L++R LKFAVSGQDKSSP++SAITSSSNVSHKSRSH   GYS EIS
Sbjct: 351 IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSH---GYSNEIS 410

Query: 121 QYSSHLSTSCRFSTYPEDHVE 141
           QYS+HLSTSCR  TYPE+HV+
Sbjct: 411 QYSNHLSTSCR--TYPENHVQ 426

The following BLAST results are available for this feature:

BLAST of Bhi06M000179 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10110.1	1.2e-37	53.37	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G18510.1	8.1e-13	34.09	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37220.1	3.2e-09	38.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G47120.1	7.9e-08	35.05	RNA recognition motif (RRM)-containing protein	[more]
AT5G64200.1	3.3e-06	32.08	ortholog of human splicing factor SC35	[more]

BLAST of Bhi06M000179 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15427	4.6e-13	39.51	Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1	[more]
Q8QZY9	4.6e-13	39.51	Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1	[more]
Q6AYL5	4.6e-13	39.51	Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1	[more]
Q09442	3.9e-12	37.18	Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV...	[more]
O14102	4.3e-11	34.88	Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of Bhi06M000179 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IDF5	3.8e-66	84.91	RNA-binding protein 7-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11147206...	[more]
A0A6J1EX61	3.4e-59	78.34	RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 P...	[more]
A0A6J1I8J0	7.6e-59	77.71	RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11147194...	[more]
A0A6J1I7S0	1.6e-56	83.10	RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11147206...	[more]
A0A0A0KXV1	2.3e-55	84.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648670 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..83 e-value: 1.9E-16 score: 70.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..81 e-value: 2.6E-14 score: 52.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..87 score: 14.726371
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..96 e-value: 2.2E-19 score: 71.5
None	No IPR available	PANTHER	PTHR13798:SF11	OS01G0876500 PROTEIN	coord: 1..139
None	No IPR available	PANTHER	PTHR13798	RNA BINDING MOTIF RBM PROTEIN -RELATED	coord: 1..139
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..84

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi06G000179	Bhi06G000179	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi06M000179.exon4	Bhi06M000179.exon4	exon
Bhi06M000179.exon3	Bhi06M000179.exon3	exon
Bhi06M000179.exon2	Bhi06M000179.exon2	exon
Bhi06M000179.exon1	Bhi06M000179.exon1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi06M000179.utr3p1	Bhi06M000179.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi06M000179	cds.Bhi06M000179_4	CDS
cds.Bhi06M000179	cds.Bhi06M000179_3	CDS
cds.Bhi06M000179	cds.Bhi06M000179_2	CDS
cds.Bhi06M000179	cds.Bhi06M000179	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi06M000179.utr5p1	Bhi06M000179.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi06M000179	Bhi06M000179-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding