Bhi06M000051 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi06M000051
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	stress-induced protein KIN2-like
Location	chr6: 1289920 .. 1290493 (+)
Sequence length	266
RNA-Seq Expression	Bhi06M000051
Synteny	Bhi06M000051

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATATTCACCAAGTCTTTCTCAAGTTCTAAGCTCCTTACTTTTGTGTTTTCAAAATTCATTACAAAATAAATGGATAATTCCCAAAAGATGAGCTACCATGCTGGAGAAGCCAAGGGTCAAGCTCAGGTTCACTTAGTCATAGCTATTTAAATTTAACCACACCATCATTTTATCGATTACATATTAGATTATTATATTTTTAAATACTGTATGGTAATTGAATATAAGATGAATGTGATAACAGTTGTCTAATATAGTAATTTCATTCTCAATAGATTTCGTGTTATCTTATCCTTCCCTTGTTTATTCTTTTATTTAAAAGGTTCTATATTGCTTTTATTGGATATCGTTGGAGATGCCCCATATTGTTTGGTTGCTATTTTATGTGATTAAGGAGTGATAAGGATAACATGTTAGTTTGTGTCATTATGTAGGAGAAGGTGAGCAATATGATGGATAAGGCAAACGATGCAGCCCAGTCGACTAAGGAATCAATGCAAGAAGCAGGACAACAGATAAAGGCCAAAGCACAAGGAGCCGCTGAAGCTGTTAAGGATGCAGTTAACAAATGA

mRNA sequence

CTATATTCACCAAGTCTTTCTCAAGTTCTAAGCTCCTTACTTTTGTGTTTTCAAAATTCATTACAAAATAAATGGATAATTCCCAAAAGATGAGCTACCATGCTGGAGAAGCCAAGGGTCAAGCTCAGGAGAAGGTGAGCAATATGATGGATAAGGCAAACGATGCAGCCCAGTCGACTAAGGAATCAATGCAAGAAGCAGGACAACAGATAAAGGCCAAAGCACAAGGAGCCGCTGAAGCTGTTAAGGATGCAGTTAACAAATGA

Coding sequence (CDS)

ATGGATAATTCCCAAAAGATGAGCTACCATGCTGGAGAAGCCAAGGGTCAAGCTCAGGAGAAGGTGAGCAATATGATGGATAAGGCAAACGATGCAGCCCAGTCGACTAAGGAATCAATGCAAGAAGCAGGACAACAGATAAAGGCCAAAGCACAAGGAGCCGCTGAAGCTGTTAAGGATGCAGTTAACAAATGA

Protein sequence

MDNSQKMSYHAGEAKGQAQEKVSNMMDKANDAAQSTKESMQEAGQQIKAKAQGAAEAVKDAVNK

Homology

[Close]

BLAST of Bhi06M000051 vs. TAIR 10
Match: AT5G53820.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 75.1 bits (183), Expect = 2.3e-14
Identity = 39/59 (66.10%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKANDAAQSTKESMQEAGQQIKAKAQGAAEAVKD 61
          +NSQ MS++AG+AKGQ QEK SN++DKA++AAQS KES+QE GQQ+K KAQGA+E +K+
Sbjct: 3  NNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIKE 61

[Close]

BLAST of Bhi06M000051 vs. TAIR 10
Match: AT5G38760.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 73.9 bits (180), Expect = 5.1e-14
Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 3  NSQKMSYHAGEAKGQAQEKVSNMMDKANDAAQSTKESMQEAGQQIKAKAQGAAEAVKDA 62
          NSQ +S+ AG+AKGQ QEK S MMDKA++AAQS KES++E GQQIK KAQGA E+VK+A
Sbjct: 4  NSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVKNA 62

[Close]

BLAST of Bhi06M000051 vs. TAIR 10
Match: AT3G02480.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-12
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 1  MDNSQKMSYHAGEAKGQAQEKVSNMMDKANDAAQSTKESMQEAGQQIKAKAQGAAEAVKD 60
          MDN Q  SY AG+A GQ +EK   MMDKA DAA S ++S+Q+ GQQ+K KAQGAA+ VKD
Sbjct: 1  MDNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKD 60

[Close]

BLAST of Bhi06M000051 vs. TAIR 10
Match: AT5G15970.1 (stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6) )

HSP 1 Score: 40.4 bits (93), Expect = 6.2e-04
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 1  MDNSQKMSYHAGEAKGQAQEKVSNMMDKANDAAQSTKESMQEAGQQIKAKAQGAAEAVKD 60
          M  + K ++ AG+A G+A+EK + ++DKA DAA +   S Q+AG+ I   A G    VKD
Sbjct: 1  MSETNKNAFQAGQAAGKAEEKSNVLLDKAKDAAAAAGASAQQAGKSISDAAVGGVNFVKD 60

[Close]

BLAST of Bhi06M000051 vs. TAIR 10
Match: AT1G52690.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 40.0 bits (92), Expect = 8.2e-04
Identity = 24/64 (37.50%), Postives = 35/64 (54.69%), Query Frame = 0


Query: 1  MDNSQKMSYHAGEAKGQAQEKVSNMMDKANDAAQSTKESMQEAGQQIKAKAQGAAEAVKD 60
          M + Q+ SY AGE +G+AQEK    M    D  Q+ K+  QE  Q  + KA   A++ KD
Sbjct: 1  MASHQEQSYKAGETRGKAQEKTGEAMGTMGDKTQAAKDKTQETAQSAQQKAHETAQSAKD 60

Query: 61 AVNK 65
            ++
Sbjct: 61 KTSQ 64

[Close]

BLAST of Bhi06M000051 vs. ExPASy TrEMBL
Match: A0A5D3BPC0 (Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002090 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.1e-19
Identity = 56/64 (87.50%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MDNSQKMSYHAGEAKGQAQEKVSNMMDKANDAAQSTKESMQEAGQQIKAKAQGAAEAVKD 60
          MDNSQKMSYHAGEAKGQ QEKVSNMMDKA++AAQSTKES+QEAGQQ+ AKAQGA +AVKD
Sbjct: 1  MDNSQKMSYHAGEAKGQTQEKVSNMMDKASNAAQSTKESVQEAGQQMMAKAQGATDAVKD 60

Query: 61 AVNK 65
          AVNK
Sbjct: 61 AVNK 64

[Close]

BLAST of Bhi06M000051 vs. ExPASy TrEMBL
Match: A0A1S3CA67 (stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103498580 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.1e-19
Identity = 56/64 (87.50%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MDNSQKMSYHAGEAKGQAQEKVSNMMDKANDAAQSTKESMQEAGQQIKAKAQGAAEAVKD 60
          MDNSQKMSYHAGEAKGQ QEKVSNMMDKA++AAQSTKES+QEAGQQ+ AKAQGA +AVKD
Sbjct: 1  MDNSQKMSYHAGEAKGQTQEKVSNMMDKASNAAQSTKESVQEAGQQMMAKAQGATDAVKD 60

Query: 61 AVNK 65
          AVNK
Sbjct: 61 AVNK 64

[Close]

BLAST of Bhi06M000051 vs. ExPASy TrEMBL
Match: A0A6J1E4Q8 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026049 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.7e-18
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKANDAAQSTKESMQEAGQQIKAKAQGAAEAVKDA 61
          DNSQKMSYHAGEAKGQAQEK SNMMDKA+DAAQS KES+QEAGQQ+KAKAQGAA+AVKDA
Sbjct: 3  DNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESVQEAGQQVKAKAQGAADAVKDA 62

[Close]

BLAST of Bhi06M000051 vs. ExPASy TrEMBL
Match: A0A6J1E4S0 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026055 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.7e-18
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKANDAAQSTKESMQEAGQQIKAKAQGAAEAVKDA 61
          DNSQKMSYHAGEAKGQAQEK SNMMDKA+DAAQS KESMQEAGQQ+KAKAQG A+AVKDA
Sbjct: 3  DNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVKDA 62

[Close]

BLAST of Bhi06M000051 vs. ExPASy TrEMBL
Match: A0A0A0KXN2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643250 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.0e-17
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKANDAAQSTKESMQEAGQQIKAKAQGAAEAVKDA 61
          DNSQKMSYHAGEAKGQ QEK+SNMMDKA+DAAQS KES+QE GQQ+ AKAQGAA+AVKDA
Sbjct: 3  DNSQKMSYHAGEAKGQTQEKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGAADAVKDA 62

Query: 62 VNK 65
          VNK
Sbjct: 63 VNK 65

The following BLAST results are available for this feature:

BLAST of Bhi06M000051 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53820.1	2.3e-14	66.10	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G38760.1	5.1e-14	69.49	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	2.1e-12	61.67	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G15970.1	6.2e-04	41.67	stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsi...	[more]
AT1G52690.1	8.2e-04	37.50	Late embryogenesis abundant protein (LEA) family protein	[more]

BLAST of Bhi06M000051 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi06M000051 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BPC0	9.1e-19	87.50	Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CA67	9.1e-19	87.50	stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103498580 PE=4 SV...	[more]
A0A6J1E4Q8	7.7e-18	90.00	stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026049 ...	[more]
A0A6J1E4S0	7.7e-18	90.00	stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026055 ...	[more]
A0A0A0KXN2	1.0e-17	85.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643250 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 26..46
None	No IPR available	GENE3D	1.20.120.20	Apolipoprotein	coord: 3..64 e-value: 2.5E-6 score: 29.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR34191:SF15	BNAA01G32930D PROTEIN	coord: 1..62
IPR039624	Stress-induced protein KIN1/KIN2	PANTHER	PTHR34191	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 1..62

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi06G000051	Bhi06G000051	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi06M000051.utr5p1	Bhi06M000051.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi06M000051.exon1	Bhi06M000051.exon1	exon
Bhi06M000051.exon2	Bhi06M000051.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi06M000051	cds.Bhi06M000051	CDS
cds.Bhi06M000051	cds.Bhi06M000051_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi06M000051	Bhi06M000051-protein	polypeptide