Bhi04M001538 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi04M001538
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	cell division cycle and apoptosis regulator protein 1
Location	chr4: 48932028 .. 48932252 (-)
Sequence length	225
RNA-Seq Expression	Bhi04M001538
Synteny	Bhi04M001538

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCAACAAAAGATACTAAAAGCATTGATAAGCTTGAAAAAGAGCAACACTCTGTGTCAACCAGGCAGACTGACATAGATAAAAAGGAAAAGAGTGACAAATGGGACAAAGGGAATACATCCGAGGGAAGGGGTAATGCAAGTAGCACAAAACTTGAAAGCAAGGATGCAGAAGAAAGAGGCAAGGAAACTCAAAACGTTGAGAAATCAGATCAAGGAGAA

mRNA sequence

ATGGAATCAACAAAAGATACTAAAAGCATTGATAAGCTTGAAAAAGAGCAACACTCTGTGTCAACCAGGCAGACTGACATAGATAAAAAGGAAAAGAGTGACAAATGGGACAAAGGGAATACATCCGAGGGAAGGGGTAATGCAAGTAGCACAAAACTTGAAAGCAAGGATGCAGAAGAAAGAGGCAAGGAAACTCAAAACGTTGAGAAATCAGATCAAGGAGAA

Coding sequence (CDS)

ATGGAATCAACAAAAGATACTAAAAGCATTGATAAGCTTGAAAAAGAGCAACACTCTGTGTCAACCAGGCAGACTGACATAGATAAAAAGGAAAAGAGTGACAAATGGGACAAAGGGAATACATCCGAGGGAAGGGGTAATGCAAGTAGCACAAAACTTGAAAGCAAGGATGCAGAAGAAAGAGGCAAGGAAACTCAAAACGTTGAGAAATCAGATCAAGGAGAA

Protein sequence

MESTKDTKSIDKLEKEQHSVSTRQTDIDKKEKSDKWDKGNTSEGRGNASSTKLESKDAEERGKETQNVEKSDQGE

Homology

[Close]

BLAST of Bhi04M001538 vs. ExPASy TrEMBL
Match: A0A5D3BAW1 (Cell division cycle and apoptosis regulator protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2612G00540 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.4e-20
Identity = 59/72 (81.94%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 2   ESTKDTKSIDKLEKEQHSVSTRQTDIDKKEKSDKWDKGNTSEGRGNASSTKLESKDAEER 61
           ESTKDTKS+DK EKEQH+VSTRQ DID+KEKSDK +KGNT+EGRGN SS+KLESKDA+ER
Sbjct: 737 ESTKDTKSVDKFEKEQHTVSTRQADIDQKEKSDKGEKGNTTEGRGNGSSSKLESKDADER 796

Query: 62  GKETQNVEKSDQ 74
           GKE QNVEK DQ
Sbjct: 797 GKEAQNVEKPDQ 808

[Close]

BLAST of Bhi04M001538 vs. ExPASy TrEMBL
Match: A0A1S3CPK5 (cell division cycle and apoptosis regulator protein 1 OS=Cucumis melo OX=3656 GN=LOC103503353 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.4e-20
Identity = 59/72 (81.94%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 2   ESTKDTKSIDKLEKEQHSVSTRQTDIDKKEKSDKWDKGNTSEGRGNASSTKLESKDAEER 61
           ESTKDTKS+DK EKEQH+VSTRQ DID+KEKSDK +KGNT+EGRGN SS+KLESKDA+ER
Sbjct: 737 ESTKDTKSVDKFEKEQHTVSTRQADIDQKEKSDKGEKGNTTEGRGNGSSSKLESKDADER 796

Query: 62  GKETQNVEKSDQ 74
           GKE QNVEK DQ
Sbjct: 797 GKEAQNVEKPDQ 808

[Close]

BLAST of Bhi04M001538 vs. ExPASy TrEMBL
Match: A0A0A0KRX1 (EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G469040 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.2e-19
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 2   ESTKDTKSIDKLEKEQHSVSTRQTDIDKKEKSDKWDKGNTSEGRGNASSTKLESKDAEER 61
           ESTKDTKS+DK EKEQH+VS RQ DID+KEKSDK DKGNTSEGRG  SS+KLESKD +ER
Sbjct: 737 ESTKDTKSVDKFEKEQHTVSIRQADIDQKEKSDKGDKGNTSEGRGTGSSSKLESKDGDER 796

Query: 62  GKETQNVEKSDQ 74
           GKE QNVEK DQ
Sbjct: 797 GKEAQNVEKPDQ 808

[Close]

BLAST of Bhi04M001538 vs. ExPASy TrEMBL
Match: A0A6J1DSN3 (cell division cycle and apoptosis regulator protein 1 OS=Momordica charantia OX=3673 GN=LOC111023548 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 1   MESTKDTKSIDKLEKEQHSVSTRQTDIDKKEKSDKWDKGNTSEGRGNASSTKLESKDAEE 60
           M STKD+KS+D  EK Q SV TRQ DIDKK KS   DKG+TSEGRGN SST LESKD +E
Sbjct: 730 MTSTKDSKSVDNSEKXQPSVPTRQVDIDKKGKS---DKGSTSEGRGNVSSTTLESKDVDE 789

Query: 61  RGKETQNVEKSDQGE 76
           RG+E QNVEKSDQ E
Sbjct: 790 RGEEAQNVEKSDQAE 801

[Close]

BLAST of Bhi04M001538 vs. ExPASy TrEMBL
Match: A0A6J1I729 (cell division cycle and apoptosis regulator protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111471837 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.8e-10
Identity = 50/74 (67.57%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 2   ESTKDTKSIDKLEKEQHSVSTRQTDIDKKEKSDKWDKGNTSEGRGNASSTKLESKDAEER 61
           ESTKDTKS+ K E              KKEKSDK DKGNTSEGRGN SSTKLESKD +ER
Sbjct: 738 ESTKDTKSVSKSE--------------KKEKSDKDDKGNTSEGRGNGSSTKLESKDEDER 797

Query: 62  GKETQNVEKSDQGE 76
           GKE QNVEK DQ E
Sbjct: 798 GKEAQNVEKPDQEE 797

The following BLAST results are available for this feature:

BLAST of Bhi04M001538 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi04M001538 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi04M001538 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BAW1	7.4e-20	81.94	Cell division cycle and apoptosis regulator protein 1 OS=Cucumis melo var. makuw...	[more]
A0A1S3CPK5	7.4e-20	81.94	cell division cycle and apoptosis regulator protein 1 OS=Cucumis melo OX=3656 GN...	[more]
A0A0A0KRX1	8.2e-19	80.56	EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G469040 PE=...	[more]
A0A6J1DSN3	1.3e-13	72.00	cell division cycle and apoptosis regulator protein 1 OS=Momordica charantia OX=...	[more]
A0A6J1I729	1.8e-10	67.57	cell division cycle and apoptosis regulator protein 1-like OS=Cucurbita maxima O...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi04G001538	Bhi04G001538	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi04M001538.exon1	Bhi04M001538.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi04M001538	cds.Bhi04M001538	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi04M001538	Bhi04M001538-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0030374	nuclear receptor coactivator activity