Bhi04M000859 (mRNA) Wax gourd (B227) v1

Overview
NameBhi04M000859
TypemRNA
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionUnknown protein
Locationchr4: 26443035 .. 26443292 (-)
Sequence length258
RNA-Seq ExpressionBhi04M000859
SyntenyBhi04M000859
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACCTTTGGACTTTGATAGTGACATAAATCCATTGTCTCAGCCTCCAAAGGTGGTTCGTAAAGAAAGGACCATGAGAAAGCGAGTGGTTCCATGGAAGCTCCGTAGTCCAATTATTGATCAACCCATCCGAAAGAAGAGGAAGAAAAGGGTGAAACCATATGATTCTATGGTTAAGATCCTGACGATGTTTGAGAAGCAGTTCTATGAGTATCTTGGAGACCTTAGGCGAACACATTTATTGACGACGATGTAA

mRNA sequence

ATGCAACCTTTGGACTTTGATAGTGACATAAATCCATTGTCTCAGCCTCCAAAGGTGGTTCGTAAAGAAAGGACCATGAGAAAGCGAGTGGTTCCATGGAAGCTCCGTAGTCCAATTATTGATCAACCCATCCGAAAGAAGAGGAAGAAAAGGGTGAAACCATATGATTCTATGGTTAAGATCCTGACGATGTTTGAGAAGCAGTTCTATGAGTATCTTGGAGACCTTAGGCGAACACATTTATTGACGACGATGTAA

Coding sequence (CDS)

ATGCAACCTTTGGACTTTGATAGTGACATAAATCCATTGTCTCAGCCTCCAAAGGTGGTTCGTAAAGAAAGGACCATGAGAAAGCGAGTGGTTCCATGGAAGCTCCGTAGTCCAATTATTGATCAACCCATCCGAAAGAAGAGGAAGAAAAGGGTGAAACCATATGATTCTATGGTTAAGATCCTGACGATGTTTGAGAAGCAGTTCTATGAGTATCTTGGAGACCTTAGGCGAACACATTTATTGACGACGATGTAA

Protein sequence

MQPLDFDSDINPLSQPPKVVRKERTMRKRVVPWKLRSPIIDQPIRKKRKKRVKPYDSMVKILTMFEKQFYEYLGDLRRTHLLTTM
Homology
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BLAST of Bhi04M000859 vs. ExPASy TrEMBL
Match: A0A5D3DA67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold228G00570 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.9e-06
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 5   DFDSDINPLS-QPPKVVRKERTMRKRVVPWKLRSPIIDQPIRKKRKKRVKPYDSMVKILT 64
           D + DI P+     +V+ KE+T RKR V  KL+S +I Q   KKR+K+V+PY+   KIL 
Sbjct: 44  DSEDDIIPVDISLGEVIPKEKTTRKRDVLRKLQSSVIKQAQGKKRRKKVRPYNPACKILA 103

Query: 65  MFEKQFYEYLGDLRR 79
            F+KQF+ YL D RR
Sbjct: 104 KFDKQFFAYLIDPRR 118

The following BLAST results are available for this feature:
BLAST of Bhi04M000859 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi04M000859 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi04M000859 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DA676.9e-0648.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi04G000859Bhi04G000859gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi04M000859.exon1Bhi04M000859.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi04M000859cds.Bhi04M000859CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi04M000859Bhi04M000859-proteinpolypeptide