Bhi03M000434 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi03M000434
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Patatin
Location	chr3: 11169679 .. 11170038 (+)
Sequence length	360
RNA-Seq Expression	Bhi03M000434
Synteny	Bhi03M000434

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAAAGGGATGAGCAGAAGCAGAAGCTTCTCTGAGAAAATGGGTGGTGTTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCGCTGGTGATGAAGGAGATCGAGTATTTCACCAAGCTTGAACTTGAACGCCATGGCGGCTCTCACACTATAAGTGGAGATGCTTTGAGAAGAAGTGATTCTAAGGGAAGCTTTTGGCTCTTGTCTTTGACTTGGAAATGGAAGAAGAGAAAAAACAACAATGGGATTCTCCCTAACATTTGCTCTGCTGTTGAATTCTCAAAAAGCAATCGCTTTAATGGGATTCCTGGTTTCGGTTACAGGATTCTCAAAGATGACTTTCCCATTTGA

mRNA sequence

ATGTATAAAGGGATGAGCAGAAGCAGAAGCTTCTCTGAGAAAATGGGTGGTGTTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCGCTGGTGATGAAGGAGATCGAGTATTTCACCAAGCTTGAACTTGAACGCCATGGCGGCTCTCACACTATAAGTGGAGATGCTTTGAGAAGAAGTGATTCTAAGGGAAGCTTTTGGCTCTTGTCTTTGACTTGGAAATGGAAGAAGAGAAAAAACAACAATGGGATTCTCCCTAACATTTGCTCTGCTGTTGAATTCTCAAAAAGCAATCGCTTTAATGGGATTCCTGGTTTCGGTTACAGGATTCTCAAAGATGACTTTCCCATTTGA

Coding sequence (CDS)

ATGTATAAAGGGATGAGCAGAAGCAGAAGCTTCTCTGAGAAAATGGGTGGTGTTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCGCTGGTGATGAAGGAGATCGAGTATTTCACCAAGCTTGAACTTGAACGCCATGGCGGCTCTCACACTATAAGTGGAGATGCTTTGAGAAGAAGTGATTCTAAGGGAAGCTTTTGGCTCTTGTCTTTGACTTGGAAATGGAAGAAGAGAAAAAACAACAATGGGATTCTCCCTAACATTTGCTCTGCTGTTGAATTCTCAAAAAGCAATCGCTTTAATGGGATTCCTGGTTTCGGTTACAGGATTCTCAAAGATGACTTTCCCATTTGA

Protein sequence

MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSHTISGDALRRSDSKGSFWLLSLTWKWKKRKNNNGILPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI

Homology

[Close]

BLAST of Bhi03M000434 vs. TAIR 10
Match: AT4G21780.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-15
Identity = 48/109 (44.04%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 19  APLAIGTRGTVGSLVMKEIEYFTKLEL------ERHGGSHTISGDALR--RSDSKGSFWL 78
           AP+AIGTRGT+GSLV KEI+YF            R G S        +  RS S+   W 
Sbjct: 3   APIAIGTRGTIGSLVRKEIDYFKNFSTCHPQFDPRRGNSEENKNTFKQRDRSSSRLGSWF 62

Query: 79  LSLTWKWKKRKNNNG---ILPNICSAVEFSKSNRFNGIPGFGYRILKDD 117
               W+ KKR+   G     P++CSAVE S  NR   +PGF YRILK D
Sbjct: 63  SKTKWRKKKRQTRGGGGKFFPSMCSAVEVSGENR---VPGFNYRILKSD 108

[Close]

BLAST of Bhi03M000434 vs. NCBI nr
Match: XP_038882225.1 (uncharacterized protein LOC120073447 [Benincasa hispida])

HSP 1 Score: 247.7 bits (631), Expect = 5.1e-62
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSHTISGDALR 60
           MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSHTISGDALR
Sbjct: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSHTISGDALR 60

Query: 61  RSDSKGSFWLLSLTWKWKKRKNNNGILPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RSDSKGSFWLLSLTWKWKKRKNNNGILPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI
Sbjct: 61  RSDSKGSFWLLSLTWKWKKRKNNNGILPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 119

[Close]

BLAST of Bhi03M000434 vs. NCBI nr
Match: XP_008441098.1 (PREDICTED: uncharacterized protein LOC103485325 [Cucumis melo] >TYK13056.1 uncharacterized protein E5676_scaffold255G006580 [Cucumis melo var. makuwa])

HSP 1 Score: 231.1 bits (588), Expect = 5.0e-57
Identity = 114/120 (95.00%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSHTISGDAL 60
           MYKGMSRSRSFSEKMGG VAPLAIGTRGTVGSLVMKEIEYFT LELERHG SHTI G+AL
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RRSDSKGSFWLLSLTWKWKKRKNNNGILPNI SAVEFSKSNRFNGIPGFGYRILKDDFPI
Sbjct: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

[Close]

BLAST of Bhi03M000434 vs. NCBI nr
Match: XP_011658506.1 (uncharacterized protein LOC105436036 [Cucumis sativus])

HSP 1 Score: 229.6 bits (584), Expect = 1.4e-56
Identity = 113/120 (94.17%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSHTISGDAL 60
           MYKGMSRSRSFSEKMGG VAPLAIGTRGTVGSLVMKEIEYFTKLELERHG SHTISG+AL
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGISHTISGNAL 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RRSDS+GSFWLLSLTWKWKKRK NNG+LPNI SAVEFSKSNRFNGIPGFGYRILKDDFPI
Sbjct: 61  RRSDSRGSFWLLSLTWKWKKRKGNNGVLPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

[Close]

BLAST of Bhi03M000434 vs. NCBI nr
Match: XP_022977336.1 (uncharacterized protein LOC111477686 [Cucurbita maxima])

HSP 1 Score: 219.2 bits (557), Expect = 2.0e-53
Identity = 105/119 (88.24%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSHTISGDALR 60
           MYKGMSRSRSFSEKM G+APLAIGTRGTVGSLVMKEIEYFTK E+ERHG S  ISGDA R
Sbjct: 1   MYKGMSRSRSFSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60

Query: 61  RSDSKGSFWLLSLTWKWKKRKNNNGILPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RSD KGSFWL+SLTWKWKKRK NNGILPNICSAVE SKSNRFNGIPGF YRILK DFPI
Sbjct: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119

[Close]

BLAST of Bhi03M000434 vs. NCBI nr
Match: KAG6603769.1 (hypothetical protein SDJN03_04378, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 216.9 bits (551), Expect = 9.7e-53
Identity = 104/119 (87.39%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSHTISGDALR 60
           MYKGMSRSRS SEKM G+APLAIGTRGTVGSLVMKEIEYFTK E+ERHG S  ISGDA R
Sbjct: 1   MYKGMSRSRSLSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60

Query: 61  RSDSKGSFWLLSLTWKWKKRKNNNGILPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RSD KGSFWL+SLTWKWKKRK NNGILPNICSAVE SKSNRFNGIPGF YRILK DFPI
Sbjct: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119

[Close]

BLAST of Bhi03M000434 vs. ExPASy TrEMBL
Match: A0A5D3CRM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006580 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.4e-57
Identity = 114/120 (95.00%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSHTISGDAL 60
           MYKGMSRSRSFSEKMGG VAPLAIGTRGTVGSLVMKEIEYFT LELERHG SHTI G+AL
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RRSDSKGSFWLLSLTWKWKKRKNNNGILPNI SAVEFSKSNRFNGIPGFGYRILKDDFPI
Sbjct: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

[Close]

BLAST of Bhi03M000434 vs. ExPASy TrEMBL
Match: A0A1S3B3D8 (uncharacterized protein LOC103485325 OS=Cucumis melo OX=3656 GN=LOC103485325 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.4e-57
Identity = 114/120 (95.00%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSHTISGDAL 60
           MYKGMSRSRSFSEKMGG VAPLAIGTRGTVGSLVMKEIEYFT LELERHG SHTI G+AL
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RRSDSKGSFWLLSLTWKWKKRKNNNGILPNI SAVEFSKSNRFNGIPGFGYRILKDDFPI
Sbjct: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

[Close]

BLAST of Bhi03M000434 vs. ExPASy TrEMBL
Match: A0A0A0KL84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514830 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.0e-57
Identity = 113/120 (94.17%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSHTISGDAL 60
           MYKGMSRSRSFSEKMGG VAPLAIGTRGTVGSLVMKEIEYFTKLELERHG SHTISG+AL
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGISHTISGNAL 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RRSDS+GSFWLLSLTWKWKKRK NNG+LPNI SAVEFSKSNRFNGIPGFGYRILKDDFPI
Sbjct: 61  RRSDSRGSFWLLSLTWKWKKRKGNNGVLPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

[Close]

BLAST of Bhi03M000434 vs. ExPASy TrEMBL
Match: A0A6J1IJL8 (uncharacterized protein LOC111477686 OS=Cucurbita maxima OX=3661 GN=LOC111477686 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 9.5e-54
Identity = 105/119 (88.24%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSHTISGDALR 60
           MYKGMSRSRSFSEKM G+APLAIGTRGTVGSLVMKEIEYFTK E+ERHG S  ISGDA R
Sbjct: 1   MYKGMSRSRSFSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60

Query: 61  RSDSKGSFWLLSLTWKWKKRKNNNGILPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RSD KGSFWL+SLTWKWKKRK NNGILPNICSAVE SKSNRFNGIPGF YRILK DFPI
Sbjct: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119

[Close]

BLAST of Bhi03M000434 vs. ExPASy TrEMBL
Match: A0A6J1EEE9 (uncharacterized protein LOC111433571 OS=Cucurbita moschata OX=3662 GN=LOC111433571 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.8e-52
Identity = 104/122 (85.25%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSHTISGDALR 60
           MY+G+SRS SFSE+MG VAPLAIGTRGT+GSLVMKEIEYFTKLELERHGGS  +SGDA R
Sbjct: 1   MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60

Query: 61  RSDSKGSFWLLSLTWKWKKRKNNNGILPNICSAVEFSKSNRFNGIPGFGYRILKDD---F 120
           RSDSK SFWLLSL+WKWKKR+ NNGILPNICSAVE SKSNRFNGIPGFGYRILKDD   F
Sbjct: 61  RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDDVTHF 120

The following BLAST results are available for this feature:

BLAST of Bhi03M000434 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21780.1	1.3e-15	44.04	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

BLAST of Bhi03M000434 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi03M000434 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882225.1	5.1e-62	100.00	uncharacterized protein LOC120073447 [Benincasa hispida]	[more]
XP_008441098.1	5.0e-57	95.00	PREDICTED: uncharacterized protein LOC103485325 [Cucumis melo] >TYK13056.1 uncha...	[more]
XP_011658506.1	1.4e-56	94.17	uncharacterized protein LOC105436036 [Cucumis sativus]	[more]
XP_022977336.1	2.0e-53	88.24	uncharacterized protein LOC111477686 [Cucurbita maxima]	[more]
KAG6603769.1	9.7e-53	87.39	hypothetical protein SDJN03_04378, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Bhi03M000434 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CRM5	2.4e-57	95.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B3D8	2.4e-57	95.00	uncharacterized protein LOC103485325 OS=Cucumis melo OX=3656 GN=LOC103485325 PE=...	[more]
A0A0A0KL84	7.0e-57	94.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514830 PE=4 SV=1	[more]
A0A6J1IJL8	9.5e-54	88.24	uncharacterized protein LOC111477686 OS=Cucurbita maxima OX=3661 GN=LOC111477686...	[more]
A0A6J1EEE9	6.8e-52	85.25	uncharacterized protein LOC111433571 OS=Cucurbita moschata OX=3662 GN=LOC1114335...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35131	EXPRESSED PROTEIN	coord: 7..116
None	No IPR available	PANTHER	PTHR35131:SF1	EXPRESSED PROTEIN	coord: 7..116

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi03G000434	Bhi03G000434	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi03M000434.exon1	Bhi03M000434.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi03M000434	cds.Bhi03M000434	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi03M000434	Bhi03M000434-protein	polypeptide