Bhi01M001736 (mRNA) Wax gourd (B227) v1

Overview
NameBhi01M001736
TypemRNA
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionUnknown protein
Locationchr1: 54159683 .. 54162860 (+)
Sequence length956
RNA-Seq ExpressionBhi01M001736
SyntenyBhi01M001736
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGATTTTCATCCAAGTGTCGGCAAATGAAACCAAAAAACATCCAATTATTTAGACAGTGAAAGGCACGTGAAATGATCACTATACTTGTAGTTCATTTTTAGTCTTATCATTATCAACTAGTATTCTCATTTCTATAAAGTTAGCTTTACATCCACAAATTCTTTACCCCTTTTCTCTCTTCCAATTTCTAGCACCTGGGCTGCAATGGCTGCAGTGGCGACGACGACGACGGTCATGGCGGTCCTGATTTTGATGCTGAGCCCTAGTGACTGCAAGGCTGCACCTCTACTTCCGTCAAATTTCGTTAACGAGACCATCGCGGGTGTGGCATCCATTTTGTGCAATGGCCTCCCGGAAGAATGCCTCACTGTTGAACAAAATTTCATTAAACCTTATGTTGGTATCGACATTGGAAGTCGAGATAAAAGTGTATGTGGTCGGTTTTATAATGGAAGGTATATAAAATGTATTACAGGTCCAGGATCCCCCAAACCAAAAATTTGTCGAAGTAATTTTGACCGCAGCTGCTAGGACAAGCTATAGCTCCTGCTTTCTATCACCTCACCAAATCTCACTCAGGTTTTATGTCAATGCTATTGTTTTGTTTTAGATAATCTTGTTTTCAGTATACGTGTAAAAATTTGTTGGCCTAAAAAATACATCCGGATAAGGGCCAAATGTTCGATCTCGTTGTTGTTTTCTTAATTTCCTTTTTAATTTTAACGTATAAATGTGAACTAAGTGGAGGAATTTATGAATTTTTGAATTGTATGCTTCAATTATTGACTGTTTTAAGTATGGTTTTAAGAGTTCAAGGAATAGAGTAGATAAGGTTCAAATACCTAAAAGTCATATTATAACACACATATATATATATTAAAATTATTTGTAGTGGACTTTCTTCTACAATAATATCTCATTTTTCTCATTTATCTTTTGGATAAGTATAAGTTTTGTTTCTGAAATTTTTTAGCCATATTTGATGATCTTTTCGTTTCTTATTTTCTCTTTCTATTTCTCATTTTTTTAAAAAAGTTTGACTTGTTTGATAATTATTTGTGGTTATTGTTTTTAAATTTTAAGAAACGTTTCTAAAAGAAGGCTAAATTTGAGAAATTACATAAAGTAGTTGAAAATTATATAGAGGTATCTAATTCACGTTGACAATATTACAGACAATATTATAGCATTCTATATAACAACTAATAGGAAATAAACAACGTATAAAAGAACACTAGAGATTGGTAACAACGTTGGTGAATATCACCTACGTCCGGGGACAGTGTGCTTAGGAAAGATAACTTCAATAATATAAATGATAAATAATTATAACGTAACACTTATCTGTAGTAGTAACACAATTATAATGACTCTCGAACAACTCAATCACTCAACCTTTCCTTTAGGCTCCCCTTGTTAGTTTAAAGAAACATAGCGGAAGAAAAAAGATCATTAACCATTCTAATTCCTCAATTTTGACATCAAATTAAACATGTTCATGGGGTATCAAGAGGGTTTCATTACATACCTTTGAAGATCCTCTACTTCAACAAAATACAGCTGCAATCTTCTCCAATTCAGGTCGTGGACCACTACTACAGCTTCCCTACTATTCTCTAGGAGTCTTAGATTGAGTTGTCACTGTTGAAGAATCTTTCTTCAACCTCAAGAATACAATAAATACCACTTATTTTCATAGTCTTTTCCACTCAATCAATAATGGTTTTATTAGGTAATGCATGCATGGATTTCACCATGTGATTTCCTTCAAAATTGAGTTGGAAAAAGTGGTGCAAATATGACTAAAGTGTAAGCTTGAAAATGGGAAAATCCCACCATGTGATTTTTCTCAATTTTCAATTTTCTTTTGTTTTTGAATTTAAACTTTTTCCAATTTTAATTCTTTAATTAAAATTGAAATTTTATTAATTTTACAAAAAAAAATCAATTCAATAATCAATCTTTCTAATAGAATTAATAATTAATAATTAATTAAAAATGTAATTAATTCCATTAATTTAATTTCAAATATTAAATTAATTTTGTCATTAGTTTCATCACCACCATGAATCCCCATTCATGAGATTAATATTTAAATCATATTTCTATATTAATCCTCCTATTACATTTAATTCCAAAATTAAACGTGTAATTATATCACATATAATTACTATTTCCCTTAATTCGAATTTGAACGTTTCAAATCAACTTATTACGCTATTATAAGACTAATCCATTTGTGAGCTAGTAGAGAACCTAATGGACCTACAGATCATGAGCTCCAACGATCCGAGATTAATTGGCTAAACTCTTTACACTGAATTAACCCTCATTCGTTTACTACTAGGTCACTCCACTAAAGCCCAGTAGTTGCACTCTCCCCACTGTAGATATATTGTGTCCACTCGATATAACCATGATTAGTAAGTTAACCTTTCACAGGTTGTTCGTAATAACGACTGTGTCAAATGATTATTTTACCCTTGAGATTACCTCTTGTTCCTTAAGTCTCACTGATCCTCTAATGAACAATTTGTTTGTGATCTAATCATCAAACTGAGTTTCTCTCGAGTCAATGAGAGGGTGAGACCCCTTATTCAAGACCCGGAGCAAGCACTTAAGGGAACAACCTCTCTACTATCCCTAAAAGCGGGTAGGAGTGAATTCTGTCTTGCACCCTATGTCCCCAACTATCTACCTGGTCTTACCCTTGAAATGGGAGGCTTTTATTTACTGCTTACGGATACAAGTTCTCGGACGAGGTTTTAGGGTTGGATTACTAACTAAAAGTCTGCTTACAGGGTTCGCTTACTACGCAGGGTATACTGGATTAGCCGGTTTGTCAGCGGCTTAAAAGAACCTTCCTTTCTTTTTCCCGTTGGAATGAATTCCTCACTACTCCTTGCTGGTGAGCTTACTTCTACAGTACAACGAGCCAGCGCTAATGGGCCAACCCTCACCTATGCAAATCTAAGGATAATCCCGAATAAATAGGAGTTCATAGTTAGCTTAGGATTAAAGTTAAGTTACCTAGGTCATTATTATGAAATAGTCAGTTTTAAACAATAAATAACGTTATAAAGTAAGAGTGACTTATTTCTTAGTCCGATTTTATGCAAACTCATTGCACAGGACGCCCCACTCTTCATGTCACCACACGAATGAATCAGGCTCA

mRNA sequence

GTTGATTTTCATCCAAGTGTCGGCAAATGAAACCAAAAAACATCCAATTATTTAGACAGTGAAAGGCACGTGAAATGATCACTATACTTGTAGTTCATTTTTAGTCTTATCATTATCAACTAGTATTCTCATTTCTATAAAGTTAGCTTTACATCCACAAATTCTTTACCCCTTTTCTCTCTTCCAATTTCTAGCACCTGGGCTGCAATGGCTGCAGTGGCGACGACGACGACGGTCATGGCGGTCCTGATTTTGATGCTGAGCCCTAGTGACTGCAAGGCTGCACCTCTACTTCCGTCAAATTTCGTTAACGAGACCATCGCGGGTGTGGCATCCATTTTGTGCAATGGCCTCCCGGAAGAATGCCTCACTGTTGAACAAAATTTCATTAAACCTTATGTTGGTATCGACATTGGAAGTCGAGATAAAAGTGTATGTGGTCGGTTTTATAATGGAAGGTATATAAAATGTATTACAGGTCCAGGATCCCCCAAACCAAAAATTTGTCGAAGTAATTTTGACCGCAGCTGCTAGGACAAGCTATAGCTCCTGCTTTCTATCACCTCACCAAATCTCACTCAGGGTTCGCTTACTACGCAGGGTATACTGGATTAGCCGGTTTGTCAGCGGCTTAAAAGAACCTTCCTTTCTTTTTCCCGTTGGAATGAATTCCTCACTACTCCTTGCTGGTGAGCTTACTTCTACAGTACAACGAGCCAGCGCTAATGGGCCAACCCTCACCTATGCAAATCTAAGGATAATCCCGAATAAATAGGAGTTCATAGTTAGCTTAGGATTAAAGTTAAGTTACCTAGGTCATTATTATGAAATAGTCAGTTTTAAACAATAAATAACGTTATAAAGTAAGAGTGACTTATTTCTTAGTCCGATTTTATGCAAACTCATTGCACAGGACGCCCCACTCTTCATGTCACCACACGAATGAATCAGGCTCA

Coding sequence (CDS)

ATGGCTGCAGTGGCGACGACGACGACGGTCATGGCGGTCCTGATTTTGATGCTGAGCCCTAGTGACTGCAAGGCTGCACCTCTACTTCCGTCAAATTTCGTTAACGAGACCATCGCGGGTGTGGCATCCATTTTGTGCAATGGCCTCCCGGAAGAATGCCTCACTGTTGAACAAAATTTCATTAAACCTTATGTTGGTATCGACATTGGAAGTCGAGATAAAAGTGTATGTGGTCGGTTTTATAATGGAAGGTATATAAAATGTATTACAGGTCCAGGATCCCCCAAACCAAAAATTTGTCGAAGTAATTTTGACCGCAGCTGCTAG

Protein sequence

MAAVATTTTVMAVLILMLSPSDCKAAPLLPSNFVNETIAGVASILCNGLPEECLTVEQNFIKPYVGIDIGSRDKSVCGRFYNGRYIKCITGPGSPKPKICRSNFDRSC
Homology
[Close]
BLAST of Bhi01M001736 vs. NCBI nr
Match: KGN53789.1 (hypothetical protein Csa_015152 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 3.9e-24
Identity = 64/108 (59.26%), Postives = 74/108 (68.52%), Query Frame = 0 

Query: 3   AVATTTTVMAVLILMLSPSD-CKAAPLLPSNFVNETIAGVAS-ILCNGLPEECLTVEQNF 62
           A A +TT M +LIL L+ S  C AA +LPSNF NETI  + S I CNGL ++C  VE+N 
Sbjct: 4   AAAPSTTAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVEENG 63

Query: 63  IKPYVGIDIGSRDKSVCGRFYNGRYIKCITGPGSPKPKICRSNFDRSC 109
           I  Y     GSR  SVCGRFYNG YIKCIT  GSPKPK CRS +DR+C
Sbjct: 64  IHYYSTPRTGSRASSVCGRFYNGSYIKCITTQGSPKPKDCRSAYDRTC 111

[Close]
BLAST of Bhi01M001736 vs. NCBI nr
Match: KAG6607071.1 (hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-04
Identity = 42/119 (35.29%), Postives = 55/119 (46.22%), Query Frame = 0 

Query: 1   MAAVATTTTVMAVLILMLSPSDCKAAPLLPSNFVNETIAGVASILCNGLPEECLTVE--- 60
           MAA A     M V IL+LS SDC  A   PS++ N T+A  AS+ C+G  EEC+T E   
Sbjct: 11  MAAAA-----MGVFILVLSGSDCNVASPTPSSYGNNTVAAAASMWCDGRVEECVTREGDS 70

Query: 61  -------QNFIKPYVGIDIGSRDKSVCGRFYNGRYIKCITGPGS-PKPKICRSNFDRSC 109
                  Q   + Y+     + +K+VC R     Y  C     S P P  C   + R C
Sbjct: 71  ASAFPSLQTSTRKYISPSSVNSNKAVCER--PDEYRSCFNPRRSNPNPNNC-GRYTRVC 121

[Close]
BLAST of Bhi01M001736 vs. ExPASy TrEMBL
Match: A0A0A0KY59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G129550 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.9e-24
Identity = 64/108 (59.26%), Postives = 74/108 (68.52%), Query Frame = 0 

Query: 3   AVATTTTVMAVLILMLSPSD-CKAAPLLPSNFVNETIAGVAS-ILCNGLPEECLTVEQNF 62
           A A +TT M +LIL L+ S  C AA +LPSNF NETI  + S I CNGL ++C  VE+N 
Sbjct: 4   AAAPSTTAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVEENG 63

Query: 63  IKPYVGIDIGSRDKSVCGRFYNGRYIKCITGPGSPKPKICRSNFDRSC 109
           I  Y     GSR  SVCGRFYNG YIKCIT  GSPKPK CRS +DR+C
Sbjct: 64  IHYYSTPRTGSRASSVCGRFYNGSYIKCITTQGSPKPKDCRSAYDRTC 111

The following BLAST results are available for this feature:
BLAST of Bhi01M001736 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi01M001736 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi01M001736 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53789.13.9e-2459.26hypothetical protein Csa_015152 [Cucumis sativus][more]
KAG6607071.14.4e-0435.29hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Bhi01M001736 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY591.9e-2459.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G129550 PE=4 SV=1[more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi01G001736Bhi01G001736gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi01M001736.utr5p1Bhi01M001736.utr5p1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi01M001736.exon1Bhi01M001736.exon1exon
Bhi01M001736.exon2Bhi01M001736.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi01M001736cds.Bhi01M001736CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi01M001736.utr3p1Bhi01M001736.utr3p1three_prime_UTR
Bhi01M001736.utr3p2Bhi01M001736.utr3p2three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi01M001736Bhi01M001736-proteinpolypeptide