Bhi01M001624 (mRNA) Wax gourd (B227) v1

Overview
NameBhi01M001624
TypemRNA
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionUnknown protein
Locationchr1: 48350547 .. 48350918 (-)
Sequence length372
RNA-Seq ExpressionBhi01M001624
SyntenyBhi01M001624
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCCTATGAAGCATCCAGGAACAAGAAGATGAATCGGACGACGAATTCTTACATGGTCCAAGGAAATCGTCCACGTGGCGTGATAAGGAATCCTAGAAAAGATCGATTGAGACTCCTTCCCCGGTACCACGAAGATCTCTACGTACTTGTCCAATCAGGAAGAGAGGGCGCGACCCCTAAGAGACGAGGCCCGTGGGTGACTGCCTACACTATGAGTGCTTGCTGCTTCGCCCGCAGCACTTGCAGCCCTCCCTCCAAATCCTCGATACGCTCTCTAGCGGTGGGGGGTGAAGGGGGGGGGGGGAGTTTACATACAACCAAGGAAAAGTGGTTTATGATTGAATCTCAGAGGCATTCTTATCATTAG

mRNA sequence

ATGGATTCCTATGAAGCATCCAGGAACAAGAAGATGAATCGGACGACGAATTCTTACATGGTCCAAGGAAATCGTCCACGTGGCGTGATAAGGAATCCTAGAAAAGATCGATTGAGACTCCTTCCCCGGTACCACGAAGATCTCTACGTACTTGTCCAATCAGGAAGAGAGGGCGCGACCCCTAAGAGACGAGGCCCGTGGGTGACTGCCTACACTATGAGTGCTTGCTGCTTCGCCCGCAGCACTTGCAGCCCTCCCTCCAAATCCTCGATACGCTCTCTAGCGGTGGGGGGTGAAGGGGGGGGGGGGAGTTTACATACAACCAAGGAAAAGTGGTTTATGATTGAATCTCAGAGGCATTCTTATCATTAG

Coding sequence (CDS)

ATGGATTCCTATGAAGCATCCAGGAACAAGAAGATGAATCGGACGACGAATTCTTACATGGTCCAAGGAAATCGTCCACGTGGCGTGATAAGGAATCCTAGAAAAGATCGATTGAGACTCCTTCCCCGGTACCACGAAGATCTCTACGTACTTGTCCAATCAGGAAGAGAGGGCGCGACCCCTAAGAGACGAGGCCCGTGGGTGACTGCCTACACTATGAGTGCTTGCTGCTTCGCCCGCAGCACTTGCAGCCCTCCCTCCAAATCCTCGATACGCTCTCTAGCGGTGGGGGGTGAAGGGGGGGGGGGGAGTTTACATACAACCAAGGAAAAGTGGTTTATGATTGAATCTCAGAGGCATTCTTATCATTAG

Protein sequence

MDSYEASRNKKMNRTTNSYMVQGNRPRGVIRNPRKDRLRLLPRYHEDLYVLVQSGREGATPKRRGPWVTAYTMSACCFARSTCSPPSKSSIRSLAVGGEGGGGSLHTTKEKWFMIESQRHSYH
Homology
[Close]
BLAST of Bhi01M001624 vs. NCBI nr
Match: OMP02494.1 (hypothetical protein CCACVL1_02786 [Corchorus capsularis])

HSP 1 Score: 54.3 bits (129), Expect = 8.6e-04
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 27 RGVIRNPRKDRLRLLPRYHEDLYVLVQS 55
          RGVIRNPRKDRLRL PR HEDLYVLVQS
Sbjct: 50 RGVIRNPRKDRLRLPPRSHEDLYVLVQS 77

[Close]
BLAST of Bhi01M001624 vs. ExPASy TrEMBL
Match: A0A1R3K614 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02786 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.2e-04
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 27 RGVIRNPRKDRLRLLPRYHEDLYVLVQS 55
          RGVIRNPRKDRLRL PR HEDLYVLVQS
Sbjct: 50 RGVIRNPRKDRLRLPPRSHEDLYVLVQS 77

The following BLAST results are available for this feature:
BLAST of Bhi01M001624 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi01M001624 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi01M001624 vs. NCBI nr
Match NameE-valueIdentityDescription
OMP02494.18.6e-0492.86hypothetical protein CCACVL1_02786 [Corchorus capsularis][more]
BLAST of Bhi01M001624 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1R3K6144.2e-0492.86Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02786 PE=4 ... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi01G001624Bhi01G001624gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi01M001624.exon1Bhi01M001624.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi01M001624cds.Bhi01M001624CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi01M001624Bhi01M001624-proteinpolypeptide