Bhi01M000655 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi01M000655
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Unknown protein
Location	chr1: 16865656 .. 16866079 (-)
Sequence length	370
RNA-Seq Expression	Bhi01M000655
Synteny	Bhi01M000655

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAATCTCGGCAAACTCAGATTGTCGATGTTTCGATCAAGGCTGAATGGGTGCTGCCTTACATCAATGAATTTAAGGAAGCTAAGTCATCTTCTGCTATCCCGACCTCTATGACAAATGGTAATCGGACTGGCATTATCCATCAATCGGTCTGGTTGCCGCTGTCGTGTGGAATATTTAAGCTTAACACCGACGCTTCGTGCCGGCCTGAATCGTAAAGGGTCAGTGTGGGAGCAATTATTCGAGACTCCAAGGGAGAGGGGGTGCTTGCGGCTACTGAGTGTATACCGAATAGGATTCGGGCGTTGGAGGTCGAAGCTATGGCCCTCTTGTTCGATTTGAAGATGGCGAATCATCTTCTTCCTTCATCTCTTCAGGTGGAGTTGGATGCCCAACTTCTGGTGCACGCTATTAATGAAGACTAG

mRNA sequence

CGAATCTCGGCAAACTCAGATTGTCGATGTTTCGATCAAGGCTGAATGGGTGCTGCCTTACATCAATGAATTTAAGGAAGCTAAGTCATCTTCTGCTATCCCGACCTCTATGACAAATGGTAATCGGACTGGCATTATCCATCAATCGGTCTGGTTGCCGCTGTCGGTCAGTGTGGGAGCAATTATTCGAGACTCCAAGGGAGAGGGGGTGCTTGCGGCTACTGAGTGTATACCGAATAGGATTCGGGCGTTGGAGGTCGAAGCTATGGCCCTCTTGTTCGATTTGAAGATGGCGAATCATCTTCTTCCTTCATCTCTTCAGGTGGAGTTGGATGCCCAACTTCTGGTGCACGCTATTAATGAAGACTAG

Coding sequence (CDS)

CGAATCTCGGCAAACTCAGATTGTCGATGTTTCGATCAAGGCTGAATGGGTGCTGCCTTACATCAATGAATTTAAGGAAGCTAAGTCATCTTCTGCTATCCCGACCTCTATGACAAATGGTAATCGGACTGGCATTATCCATCAATCGGTCTGGTTGCCGCTGTCGGTCAGTGTGGGAGCAATTATTCGAGACTCCAAGGGAGAGGGGGTGCTTGCGGCTACTGAGTGTATACCGAATAGGATTCGGGCGTTGGAGGTCGAAGCTATGGCCCTCTTGTTCGATTTGAAGATGGCGAATCATCTTCTTCCTTCATCTCTTCAGGTGGAGTTGGATGCCCAACTTCTGGTGCACGCTATTAATGAAGACTAG

Protein sequence

ESRQTQIVDVSIKAEWVLPYINEFKEAKSSSAIPTSMTNGNRTGIIHQSVWLPLSVSVGAIIRDSKGEGVLAATECIPNRIRALEVEAMALLFDLKMANHLLPSSLQVELDAQLLVHAINED

Homology

The following BLAST results are available for this feature:

BLAST of Bhi01M000655 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi01M000655 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi01M000655 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi01M000655 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 57..121 e-value: 1.1E-8 score: 35.0

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi01G000655	Bhi01G000655	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi01M000655.exon2	Bhi01M000655.exon2	exon
Bhi01M000655.exon1	Bhi01M000655.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi01M000655	cds.Bhi01M000655_2	CDS
cds.Bhi01M000655	cds.Bhi01M000655	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi01M000655	Bhi01M000655-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity