Tan0022740 (gene) Snake gourd v1

Overview
NameTan0022740
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
LocationLG11: 37545324 .. 37550328 (+)
RNA-Seq ExpressionTan0022740
SyntenyTan0022740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCAAAGGATGATGTGAATCAAACCATTGATCCATTGCATGTACCTGAAGGAGCAATAACAAGGAGCAAGGCCAAGAAGATTCAAGAGGCTTTCACATTGCATCTCCAAAAGCTCGTGAATGCACAAGGAGAGACCAAGATTTTTGAGCCCCAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGGCACGAGAAAAGTTGTCTTGTTTGAAAGATGGCACGGAGGACAAAAAAAGTGTGCAGAAAATGTGAACAGGTGGCTGTCTAGATTGCACCTCTTGGGATTTCGTGATGTCAAACCTCGTCAAACGAAATAGTCATGCATGGCGGATCCTACAGTTGATAATTAAGACCATTTAAAGCATTTCTATGTTTTTTGTTCCATATTTAGAGCTCTCAAACGTTGTGCAATCAAGTTTTAAATTCCTAGGTCAATTTTTTCTTCATTTCACATTTAATGCTTTTTAAAGACTTTTGGTCTTTGGTGCTTTGCACGACCATTTTGGTCTATTTAAAGGCTTCTATTGGCTTGGAAAAGGCAGAACCTTTATGAAAAAAACTTGTGTTTTGTTTAGCCCCATTTGGTGTTAACTTTCTTTCAAATCTTGCTTTAGGTTTGATGTTTAACCGATTCATTGGATTAGCCCCGATCAAGCTAATTCTGGAGTGAGTCGTCTTAGGATCTAGGAGTGACCATCCTTATTCTAAGTTTGATCTAAGAGTGATTCATCTTCTAACTAAACTCTTAGTTGGAATCAATTCGTTAAGTTAGCCTTGTTCGTGACGTTTGCAAAGATCCTAGAAGGACCTCTAGTTTTGTTAAACCAACAAATTCGGCACTTATCATTTGGTATCAGAGCTCGTTGGTCGACATCCTTTGGCCGACTCTCTAGAGGTGAAATATCTTCAATTTGCTTTACTTTATTTTCTGTCATTTTTTTTATCATTTACAAAGTTTAATACAAGGCATCCTACAACTTTTCTTCCATTTCTTTGTGTTTAGTTCTTGGATAAAAAAACAAGAGTAAAAAGTGAAAAAAACAGATGCAAAAAGTGAAAAAAAGCAGTAGCAAAAAGTGGAAAAAAAAATAGTAGCAAAGAAAAAAAAGTGTTCAAGGATCCAAGACACACAAAAGTTCTTGATTTTAAATTTTATTTTCTCAAAACTTTGAGTTGTAGATCCTTAGGATGAGTTTCTCTAGTCTTAGCTTGTGAAAGGTTATCATTGATTTAGTTTTATATCAAGTTGAAAAGCAAGGTTGCACCAAATTTTTAAACCAACCCTTACATCTTTGACCTAGTACCAAAAGCCTACCCTTGAGTGATAAACACGAGTGTCCTTGAGTGATATTGATAAGTAACTCTTGATGATTTTAAAATCTAATAACCTTGTTCTTAAACAAGACCTTTAGATCTAAAACCCAAAAACCCCAAATCTAGATGATTTCATCCCAAGGAAGAAGATAGAAACGGATTTACCTTGATGATCAAGATCAAGAGTAGAGAAAACTTGTTTCTAAACTCAAGTTTCGAATCACTCCACAAGTAGTTTGATCAACGCTACTTGAATGATCCTAGCATGCAAATCTAAACACAAGATATGCAAAGAAACAAGCTCATGGCTTAAGAAGCAAAATATGCAACTTTTTCATTCAAAACATGATTCCAAGTCCTTTTTTTTACAATACATCTTAGATGGCTTTATATAGCCTTCCAATTGTAACCTAAAACTAAGCTAAAATGACATGTTTGAGAATGTAACTTCCCTAACTTTAATGTCATAACTATCCACTACTCAAATGTAACCTAAAACATTGAAATAGAAACTTTTAAAACTGAAATTACAAGTAAATGAAGTATAAATTCGAGAATTAATCTTCTAACAACAATTCTAGTCTTTGTAACCTCCCAAGGTGTAAATGAAGCTCCACTTGAAGTAACTTGAAGTGTTTAATTGATGCTTGACATGCATTAAATGAAGCTTGAGATGCACTTAAGTTCTTTCAATGCAACTTGAATTCATCATAAATGAAGCCTTGATGCATTTAATGCAACTCCATTTTTAGCTCTTCTTTAGTCTTGACTAGCGTTGTAGGATTCATATCAGATATCTTGGTGAGAAGTGTGGAGAGGTCCTTATAAAAAAAATGTCACAAGATAATAAAGAAAAAGTTCTGCAAGTGGTAGATCCAAATATGGCTATTCTTCAAGCAATTCAAGGTATGATGGAGATGATGAGAGAAGAAAGGGACGAAAGGAGAGCACAACAACAAAGAGAAGAACGGATCTTGCAAGAAGATGAAGGCATGTTTGATTTACAGGTACAAGAAAGAAACTTAGGAGGAAGAGGAAATGTGAGGGGAAGAGGAAGAAATAACGTTGCAAACATTGTGCAACCTAGAAGAGCGGAAAGAGTGAATGAAGAAAGGGATAGCGGAGTGAAACTCTGAAATTCCACCCTTTAGTGGTACAGCGGACTCAGAGGCATACTTGCAATGGGAAAGAAAAATAGAACATGTATTTGATTGTAATACATATAGTGAGAATAAGAAGATGAAACTTGCCATTGCCGAATTCACCAATCATGCGGGAGAATGGTATCATCATCTCAAATCCGAGAGAAGAAGGAAAGAGGAAGATCCAATAGAAACTTGGGAAGAACTTAAAGAAGCCATGAGAAAGAGGTATGTTCCAAAACATTATGAAAGAGATTTGAAAACTAAATTGCAATCTTTGAGACAGGGAACAAAAAGTGTTGCTGAATATTATCAAGAGATGGAGTCCTTGATGGAAAGAGCAAAAATTCGAGAAAAGAGGAAGACACCATGTCTCGATTCCTTGGAGGTTTGAATCGAGAAATTGCTCATCCGGTTGATAGAAATCCACCACCTTACCTTGAAGATATGTATCATTATGCTATCAAAATTGAAGCTCAATTGAAGGAAGAAAGGGAGCATTCAATAAGGTATACACCTAAAGCTAGTAACTTTTCAAACTCTAATGCATGGAACAAGGATAGTTTTGTGAATAGGAATGAACCGACACAACAAAGAAGTAAGTTTGTTGCTGCCAAAAGAGTGGAGGCCGAAAGCTCCAATGCTAAAAAGAATGAAGCTTCAAAGGAGGTAAGGAAAAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGACACATGAGCAAAGAATGTGTCAATAAAAGAGTTATGGTGATAAGAAATGGTGTAGTTGATTCGGAGGATGAATGTGAGGAGCATAATGCCCCATTTGAGGAAGAATCTGAAATATGTGATGATGAGTATGTTGAAGAAGGTAACTCCATATCGTTGATCACAAGGAGGGTCCTTAGTATGCAAATCAAGGAAGACAAAGATGAAGACCAAAGGGAAAACTTGTTTCACACAAGATGCCTAATTAAAGGAAGTCCATGCAGTTTGGTGATTGATAGTGGGAGTTGCACAAATGTGGTAAGTAGTTTTCTTGTAAAGAGACTTCAACTTACTACCCGTCCACATCCAAAGCCATACAAACTTCAATGGTTGACAAACAAATGAGAACTTAAGGTAAATTCTCAAGTTCTTATTCCTTTTACTTTGGGAAGATATAAGGATGAAGTACTTTGTGATGTTTTACCTATGCATGCATGGGGATATATTGTTAGGCGACCTTGGCAATATGATAGAGAGGTCACATTTGATGGAGTGAAAAATAAGTATTCGCTTACCTTCAACGGGAAGAAATTTACTTTACTTCCATTGTCTCCATATGAAGTACATTGTGATCATTTGAAATTAGAGAAGAAAAGAAAAGAGTTTGAAGAACAAGAGAGGAGAGAAGAAAGTAAGTTAAAAGAAAAAGAAAAGAGTGAAAAGAAAGAGAGAAGTGAGGGGCAAAAGGTGAGTGAAAACCAAGAGAGAAAAAAGAGGGATTTTGAGGAAAAAAGAAAGAATGTGAGTTTGGTTATAAGAAAGGGGGAAATGAGGAATGTGTTGTTGACACAACAACCAAAATTTGTATTTATGTGCAAAGGGATGTGTTTAACAACTGACCCAAAATCTAATGATGTTTTGCCAAGTTCTTCTAAGTCTCTTTTGCAGGAATTTAACGATATGTTTCCACATGAAGATGCACCTACGGATTTACCTCCTTTAAGAGGGATTGAAAATCAAATTGACTTCATACCCGGGGCAACTCTTCCAAACATGGCAGCTTATAGGACCAATCCAACCGAGACTAAGGAGATTCAAAGGCAAGTAGAAGAACTCATGGATAAAGGTTATGTTAGAGAAAGCATGAGTCCTTGCTCAGTTCGTGATTTTGGTACCCAAGAAGGATGGCACATGGAGAATGTGTGTTGATTGTCGAGCCATCAACAAGATAACGGTAAAGTATCGACATCCCATTCCTAGATTGGATGACATGCTAGATGAATTACATGGTGCTAATCTGTTTTCAAAAATAGATCTTAAAAGTGGTTATCATCAAATTCGAATGCATGTGGGAGATGAGTGGAAAACGGCTTTCAAAACAAAATTTAGACTTTATGAGTGGCTTGTTATGCCATTTGGCCTTACTAATGCACCAAGTACTTTTATGAGGCTAATGAATCATGTGTTGAAAGAGTACATTGGAAAATTTGTTGTTGTGTACTTTGATGATATTCTTGTTTACTCAAAAAGCTTGGATGATCATATTTTGCATGTTAAGACAATTTTACTTAAACTTAGAGAAGAGAAGCTATATGCCAACTTCAAAAGTGTAGTTTTGTCTAGACCAAGTCAATTTCCTAGGTTTCATTGTTGGAAGGAATGGTGTACAAGTTGATGAAGAAAAGGTAAAGGCTATCCGAGAGTGGCCAACACCTACCAATGCAAATGAGGTGAGATCTTTTCATGGTTTGGCTAGTTTTTATAGGAGGTTTATTAAGAACTTCAGTAGTATAGCCTCACCATTAAATGAACTTGTCAAAAGCATGTGA

mRNA sequence

ATGAAATCAAAGGATGATGTGAATCAAACCATTGATCCATTGCATGTACCTGAAGGAGCAATAACAAGGAGCAAGGCCAAGAAGATTCAAGAGGCTTTCACATTGCATCTCCAAAAGCTCGTGAATGCACAAGGAGAGACCAAGATTTTTGAGCCCCAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGGCACGAGAAAAGTTGTCTTGTTTGAAAGATGGCACGGAGGACAAAAAAAGTGTGCAGAAAATGTTTGATGTCCTTATAAAAAAAATGTCACAAGATAATAAAGAAAAAGTTCTGCAAGTGGTAGATCCAAATATGGCTATTCTTCAAGCAATTCAAGGTATGATGGAGATGATGAGAGAAGAAAGGGACGAAAGGAGAGCACAACAACAAAGAGAAGAACGGATCTTGCAAGAAGATGAAGGCATGTTTGATTTACAGGTACAAGAAAGAAACTTAGGAGGAAGAGGAAATAATGTGAGTTTGGTTATAAGAAAGGGGGAAATGAGGAATGTGTTGTTGACACAACAACCAAAATTTGTATTTATGTGCAAAGGGATGTGTTTAACAACTGACCCAAAATCTAATGATGTTTTGCCAAGTTCTTCTAAGTCTCTTTTGAATGGTGTACAAGTTGATGAAGAAAAGGTAAAGGCTATCCGAGAGTGGCCAACACCTACCAATGCAAATGAGGTGAGATCTTTTCATGGTTTGGCTAGTTTTTATAGGAGGTTTATTAAGAACTTCAGTAGTATAGCCTCACCATTAAATGAACTTGTCAAAAGCATGTGA

Coding sequence (CDS)

ATGAAATCAAAGGATGATGTGAATCAAACCATTGATCCATTGCATGTACCTGAAGGAGCAATAACAAGGAGCAAGGCCAAGAAGATTCAAGAGGCTTTCACATTGCATCTCCAAAAGCTCGTGAATGCACAAGGAGAGACCAAGATTTTTGAGCCCCAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGGCACGAGAAAAGTTGTCTTGTTTGAAAGATGGCACGGAGGACAAAAAAAGTGTGCAGAAAATGTTTGATGTCCTTATAAAAAAAATGTCACAAGATAATAAAGAAAAAGTTCTGCAAGTGGTAGATCCAAATATGGCTATTCTTCAAGCAATTCAAGGTATGATGGAGATGATGAGAGAAGAAAGGGACGAAAGGAGAGCACAACAACAAAGAGAAGAACGGATCTTGCAAGAAGATGAAGGCATGTTTGATTTACAGGTACAAGAAAGAAACTTAGGAGGAAGAGGAAATAATGTGAGTTTGGTTATAAGAAAGGGGGAAATGAGGAATGTGTTGTTGACACAACAACCAAAATTTGTATTTATGTGCAAAGGGATGTGTTTAACAACTGACCCAAAATCTAATGATGTTTTGCCAAGTTCTTCTAAGTCTCTTTTGAATGGTGTACAAGTTGATGAAGAAAAGGTAAAGGCTATCCGAGAGTGGCCAACACCTACCAATGCAAATGAGGTGAGATCTTTTCATGGTTTGGCTAGTTTTTATAGGAGGTTTATTAAGAACTTCAGTAGTATAGCCTCACCATTAAATGAACTTGTCAAAAGCATGTGA

Protein sequence

MKSKDDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPQILYNVSTTSQDENGVKMAREKLSCLKDGTEDKKSVQKMFDVLIKKMSQDNKEKVLQVVDPNMAILQAIQGMMEMMREERDERRAQQQREERILQEDEGMFDLQVQERNLGGRGNNVSLVIRKGEMRNVLLTQQPKFVFMCKGMCLTTDPKSNDVLPSSSKSLLNGVQVDEEKVKAIREWPTPTNANEVRSFHGLASFYRRFIKNFSSIASPLNELVKSM
Homology
[Close]
BLAST of Tan0022740 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.0e-09
Identity = 29/54 (53.70%), Postives = 42/54 (77.78%), Query Frame = 0 

Query: 217 NGVQVDEEKVKAIREWPTPTNANEVRSFHGLASFYRRFIKNFSSIASPLNELVK 271
           +G + D EKVKAI+E+P P    +VRSF GLAS+YR FIK+F++IA P+ +++K
Sbjct: 393 DGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILK 446

[Close]
BLAST of Tan0022740 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-08
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 0 

Query: 218 GVQVDEEKVKAIREWPTPTNANEVRSFHGLASFYRRFIKNFSSIASPLNELVK 271
           GV  D  K++A+  WP P N  E+R F GL  +YRRF+KN+  I  PL EL+K
Sbjct: 43  GVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLK 95

[Close]
BLAST of Tan0022740 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-07
Identity = 22/56 (39.29%), Postives = 40/56 (71.43%), Query Frame = 0 

Query: 217 NGVQVDEEKVKAIREWPTPTNANEVRSFHGLASFYRRFIKNFSSIASPLNELVKSM 273
           +G++ D +KV+AI E P PT+  E++ F G+ S+YR+FI++++ +A PL  L + +
Sbjct: 334 DGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGL 389

[Close]
BLAST of Tan0022740 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-07
Identity = 22/54 (40.74%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 217 NGVQVDEEKVKAIREWPTPTNANEVRSFHGLASFYRRFIKNFSSIASPLNELVK 271
           +G++ + EK++AI+++P PT   E+++F GL  +YR+FI NF+ IA P+ + +K
Sbjct: 418 DGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLK 471

[Close]
BLAST of Tan0022740 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-06
Identity = 23/54 (42.59%), Postives = 36/54 (66.67%), Query Frame = 0 

Query: 217 NGVQVDEEKVKAIREWPTPTNANEVRSFHGLASFYRRFIKNFSSIASPLNELVK 271
           +G++ +  KVKAI  +P PT   E+R+F GL  +YR+FI N++ IA P+   +K
Sbjct: 417 DGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLK 470

[Close]
BLAST of Tan0022740 vs. NCBI nr
Match: TYK02449.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 3.5e-21
Identity = 59/87 (67.82%), Postives = 71/87 (81.61%), Query Frame = 0 

Query: 5    DDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPQILYNVSTTSQD 64
            DDV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE + LYNVS+ SQ+
Sbjct: 1418 DDVDSLNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQE 1477

Query: 65   ENGVKMAREKLSCLKDGTEDKKSVQKM 92
            E+GVKMAREKL  L+DGT ++KSVQ +
Sbjct: 1478 EHGVKMAREKLCNLEDGTRNEKSVQNL 1504

[Close]
BLAST of Tan0022740 vs. NCBI nr
Match: TYK20861.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-20
Identity = 61/96 (63.54%), Postives = 75/96 (78.12%), Query Frame = 0 

Query: 5   DDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPQILYNVSTTSQD 64
           DDV+   + LHVPEG+IT+ KAKKIQEAFTLH+QKL NAQ ETK FE + LYNVS+ SQ+
Sbjct: 188 DDVDSLNNLLHVPEGSITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQE 247

Query: 65  ENGVKMAREKLSCLKDGTEDKKSVQKMFDVLIKKMS 101
           E+ VKMAREKL  L+DGT ++KSVQ   +V I+  S
Sbjct: 248 EHRVKMAREKLCNLEDGTGNEKSVQNCEEVAIQLAS 283

[Close]
BLAST of Tan0022740 vs. NCBI nr
Match: KAA0065364.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-20
Identity = 61/96 (63.54%), Postives = 75/96 (78.12%), Query Frame = 0 

Query: 5   DDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPQILYNVSTTSQD 64
           DDV+   + LHVPEG+IT+ KAKKIQEAFTLH+QKL NAQ ETK FE + LYNVS+ SQ+
Sbjct: 188 DDVDSLNNLLHVPEGSITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQE 247

Query: 65  ENGVKMAREKLSCLKDGTEDKKSVQKMFDVLIKKMS 101
           E+ VKMAREKL  L+DGT ++KSVQ   +V I+  S
Sbjct: 248 EHRVKMAREKLCNLEDGTGNEKSVQNCEEVAIQLAS 283

[Close]
BLAST of Tan0022740 vs. NCBI nr
Match: KAA0051909.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 1.7e-20
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 0 

Query: 5   DDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPQILYNVSTTSQD 64
           DDV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE + LYNVS+ SQ+
Sbjct: 902 DDVDSLNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQE 961

Query: 65  ENGVKMAREKLSCLKDGTEDKKSVQKM 92
           E+GVKMAREKL   +DGT ++KSVQ +
Sbjct: 962 EHGVKMAREKLCNFEDGTGNEKSVQNL 988

[Close]
BLAST of Tan0022740 vs. NCBI nr
Match: KAA0067206.1 (hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 5.0e-20
Identity = 57/87 (65.52%), Postives = 69/87 (79.31%), Query Frame = 0 

Query: 5   DDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPQILYNVSTTSQD 64
           DDV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ E K FEP+ LYNVS+ SQ+
Sbjct: 274 DDVDSINNLLHVPEGPITKRKAKKIQEAFTLHVQKLENAQREIKNFEPKFLYNVSSASQE 333

Query: 65  ENGVKMAREKLSCLKDGTEDKKSVQKM 92
           E+ +KMA EKL  L+DGT D+KSVQ +
Sbjct: 334 EHEIKMAWEKLCSLEDGTGDEKSVQNL 360

[Close]
BLAST of Tan0022740 vs. ExPASy TrEMBL
Match: A0A5D3BWE8 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00600 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-21
Identity = 59/87 (67.82%), Postives = 71/87 (81.61%), Query Frame = 0 

Query: 5    DDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPQILYNVSTTSQD 64
            DDV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE + LYNVS+ SQ+
Sbjct: 1418 DDVDSLNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQE 1477

Query: 65   ENGVKMAREKLSCLKDGTEDKKSVQKM 92
            E+GVKMAREKL  L+DGT ++KSVQ +
Sbjct: 1478 EHGVKMAREKLCNLEDGTRNEKSVQNL 1504

[Close]
BLAST of Tan0022740 vs. ExPASy TrEMBL
Match: A0A5A7VDK8 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00260 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.9e-21
Identity = 61/96 (63.54%), Postives = 75/96 (78.12%), Query Frame = 0 

Query: 5   DDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPQILYNVSTTSQD 64
           DDV+   + LHVPEG+IT+ KAKKIQEAFTLH+QKL NAQ ETK FE + LYNVS+ SQ+
Sbjct: 188 DDVDSLNNLLHVPEGSITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQE 247

Query: 65  ENGVKMAREKLSCLKDGTEDKKSVQKMFDVLIKKMS 101
           E+ VKMAREKL  L+DGT ++KSVQ   +V I+  S
Sbjct: 248 EHRVKMAREKLCNLEDGTGNEKSVQNCEEVAIQLAS 283

[Close]
BLAST of Tan0022740 vs. ExPASy TrEMBL
Match: A0A5D3DB73 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold682G00260 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.9e-21
Identity = 61/96 (63.54%), Postives = 75/96 (78.12%), Query Frame = 0 

Query: 5   DDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPQILYNVSTTSQD 64
           DDV+   + LHVPEG+IT+ KAKKIQEAFTLH+QKL NAQ ETK FE + LYNVS+ SQ+
Sbjct: 188 DDVDSLNNLLHVPEGSITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQE 247

Query: 65  ENGVKMAREKLSCLKDGTEDKKSVQKMFDVLIKKMS 101
           E+ VKMAREKL  L+DGT ++KSVQ   +V I+  S
Sbjct: 248 EHRVKMAREKLCNLEDGTGNEKSVQNCEEVAIQLAS 283

[Close]
BLAST of Tan0022740 vs. ExPASy TrEMBL
Match: A0A5A7UEI2 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003620 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.3e-21
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 0 

Query: 5   DDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPQILYNVSTTSQD 64
           DDV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE + LYNVS+ SQ+
Sbjct: 902 DDVDSLNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQE 961

Query: 65  ENGVKMAREKLSCLKDGTEDKKSVQKM 92
           E+GVKMAREKL   +DGT ++KSVQ +
Sbjct: 962 EHGVKMAREKLCNFEDGTGNEKSVQNL 988

[Close]
BLAST of Tan0022740 vs. ExPASy TrEMBL
Match: A0A5A7VL78 (RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00080 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.4e-20
Identity = 57/87 (65.52%), Postives = 69/87 (79.31%), Query Frame = 0 

Query: 5   DDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPQILYNVSTTSQD 64
           DDV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ E K FEP+ LYNVS+ SQ+
Sbjct: 274 DDVDSINNLLHVPEGPITKRKAKKIQEAFTLHVQKLENAQREIKNFEPKFLYNVSSASQE 333

Query: 65  ENGVKMAREKLSCLKDGTEDKKSVQKM 92
           E+ +KMA EKL  L+DGT D+KSVQ +
Sbjct: 334 EHEIKMAWEKLCSLEDGTGDEKSVQNL 360

[Close]
BLAST of Tan0022740 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-09
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 0 

Query: 218 GVQVDEEKVKAIREWPTPTNANEVRSFHGLASFYRRFIKNFSSIASPLNELVK 271
           GV  D  K++A+  WP P N  E+R F GL  +YRRF+KN+  I  PL EL+K
Sbjct: 43  GVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLK 95

The following BLAST results are available for this feature:
BLAST of Tan0022740 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P104017.0e-0953.70Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas... [more]
P925232.0e-0849.06Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ... [more]
Q8I7P91.3e-0739.29Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
P043231.7e-0740.74Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
P208252.5e-0642.59Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
BLAST of Tan0022740 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK02449.13.5e-2167.82F15O4.13 [Cucumis melo var. makuwa][more]
TYK20861.11.0e-2063.54Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0065364.11.0e-2063.54Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0051909.11.7e-2066.67Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0067206.15.0e-2065.52hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa][more]
BLAST of Tan0022740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BWE81.7e-2167.82F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00600 PE=4... [more]
A0A5A7VDK84.9e-2163.54Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DB734.9e-2163.54Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7UEI28.3e-2166.67Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7VL782.4e-2065.52RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
BLAST of Tan0022740 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG00860.11.5e-0949.06DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 121..148
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 223..271
e-value: 2.1E-18
score: 68.1
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 217..270

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0022740.1Tan0022740.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding