Tan0022738 (gene) Snake gourd v1

Overview


Name	Tan0022738
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	glycine-rich cell wall structural protein 2-like
Location	LG09: 67861501 .. 67861872 (-)
RNA-Seq Expression	Tan0022738
Synteny	Tan0022738

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATCAAGGCTGTTGCCATTGTTGCTTTCGAACTTGGCGTGTCAGAAAGCCGCGTGGCCAGGAAGGACTTGGGCCTCGGTGTTGGCACGGGGGTGGGCTTGGGCTTGGGCTTAGGCGGTGGGAGTGGAAGTGGAACTGGCTCGGGTTCCGGATCCGGATCTGGGTCTAGTTCTGCTTCATCATCACACTCCTCAAGCTCCAGCTCTGGCTCCGATGCTGGTTCGTACGCCGGCTCTTACGCAGGGTCTCGGGCCGAATCCGGTTCGGGCGGGAACATGAATAATAATGGTGGATCCGGATCCGGATCGGGTTCAGGATATGGTGAGGGCCATGGCTATGGCAAAGGTGATGACGGTGAAAACTGA

mRNA sequence

ATGGCTTCCATCAAGGCTGTTGCCATTGTTGCTTTCGAACTTGGCGTGTCAGAAAGCCGCGTGGCCAGGAAGGACTTGGGCCTCGGTGTTGGCACGGGGGTGGGCTTGGGCTTGGGCTTAGGCGGTGGGAGTGGAAGTGGAACTGGCTCGGGTTCCGGATCCGGATCTGGGTCTAGTTCTGCTTCATCATCACACTCCTCAAGCTCCAGCTCTGGCTCCGATGCTGGTTCGTACGCCGGCTCTTACGCAGGGTCTCGGGCCGGATCCGGATCGGGTTCAGGATATGGTGAGGGCCATGGCTATGGCAAAGGTGATGACGGTGAAAACTGA

Coding sequence (CDS)

ATGGCTTCCATCAAGGCTGTTGCCATTGTTGCTTTCGAACTTGGCGTGTCAGAAAGCCGCGTGGCCAGGAAGGACTTGGGCCTCGGTGTTGGCACGGGGGTGGGCTTGGGCTTGGGCTTAGGCGGTGGGAGTGGAAGTGGAACTGGCTCGGGTTCCGGATCCGGATCTGGGTCTAGTTCTGCTTCATCATCACACTCCTCAAGCTCCAGCTCTGGCTCCGATGCTGGTTCGTACGCCGGCTCTTACGCAGGGTCTCGGGCCGGATCCGGATCGGGTTCAGGATATGGTGAGGGCCATGGCTATGGCAAAGGTGATGACGGTGAAAACTGA

Protein sequence

MASIKAVAIVAFELGVSESRVARKDLGLGVGTGVGLGLGLGGGSGSGTGSGSGSGSGSSSASSSHSSSSSSGSDAGSYAGSYAGSRAGSGSGSGYGEGHGYGKGDDGEN

Homology

[Close]

BLAST of Tan0022738 vs. NCBI nr
Match: XP_038879815.1 (putative per-hexamer repeat protein 5 [Benincasa hispida])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 95/152 (62.50%), Postives = 101/152 (66.45%), Query Frame = 0


Query: 1   MASIKAVAIVAFELG----VSESRVARKDL-------GLGVGTGVGLGLGLGGGSGSGTG 60
           MASI+AV I+AF LG    VSE RVAR +L       GLGVGTGVGLGLG G GSGSG+G
Sbjct: 1   MASIRAVTILAFLLGVSVIVSEGRVARMNLGLDLGGVGLGVGTGVGLGLG-GSGSGSGSG 60

Query: 61  SGSGSGSGSSSASSSHSSSSSSGSD----AGSYAGSYAGSRAGS---------------- 110
           SGSGSGSGSSSASSSHSSSSSSGSD    AGSYAGSYAGSRAGS                
Sbjct: 61  SGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGS 120

[Close]

BLAST of Tan0022738 vs. NCBI nr
Match: XP_022988595.1 (putative glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 91.3 bits (225), Expect = 5.6e-15
Identity = 80/118 (67.80%), Postives = 92/118 (77.97%), Query Frame = 0


Query: 1   MASIKAVAIVAFELG----VSESRVARKDLGL---GVGTGVGLGLGLG-GGSGSGTGSGS 60
           MAS   + ++ F L     VS++RVARKDLGL   G+G G+G G+GLG GGSGSG+GSGS
Sbjct: 1   MASFNTLLVLCFLLSFSAIVSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSSSASSSHSSSSSSGSDAGSYAGSYAGSRAGSGS------GSGYGEGHGYGKG 105
           GSGSGSSS+SSS+SSSSSSGS AGS AGSYAGSRAGSGS      G GYGEGHGYG+G
Sbjct: 61  GSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGRNRNGGEGYGEGHGYGEG 118

[Close]

BLAST of Tan0022738 vs. NCBI nr
Match: XP_022921884.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG6589744.1 hypothetical protein SDJN03_15167, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.3 bits (225), Expect = 5.6e-15
Identity = 92/150 (61.33%), Postives = 98/150 (65.33%), Query Frame = 0


Query: 1   MASIKAVAIVAFELG----VSESRVARKDLGL-------GVGTGVGLGLGLGGGSGSGTG 60
           MASI+AV+I+A  L     VSESRVAR DLGL       G+GTGVGLGLG G GSGSG+G
Sbjct: 1   MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLG-GSGSGSGSG 60

Query: 61  SGSGSGSGSSSASSSHSSSSSSGSDAGSYAGSYAGSRAGSGS------------------ 110
           SGSGSGSGSSSASSSHSSSSSSGSDAGS AGSYAGS AGSGS                  
Sbjct: 61  SGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGY 120

[Close]

BLAST of Tan0022738 vs. NCBI nr
Match: XP_011656027.1 (glycine-rich protein DOT1 [Cucumis sativus] >KGN65264.1 hypothetical protein Csa_020034 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 5.6e-15
Identity = 86/131 (65.65%), Postives = 95/131 (72.52%), Query Frame = 0


Query: 1   MASIKAVAIVAFELGVS-----ESRVARKDL-----GLGVGTGVGLGLGLGGGSGS--GT 60
           MASIKA+A++   L +S       RVARKDL     GLGVG G+GLGLGLGGGSGS  G 
Sbjct: 1   MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGAGA 60

Query: 61  GSGSGSGSGSSSASSSHSSSSS-----SGSDAGSYAGSYAGSRAGSGSGS---------- 105
           GSGSGSGSGS S+SSSHSSSSS     +GS+AGSYAGSYAGSRAGSGSGS          
Sbjct: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGSRNGASGGEGH 120

[Close]

BLAST of Tan0022738 vs. NCBI nr
Match: XP_022135238.1 (putative glycine-rich cell wall structural protein 1 [Momordica charantia])

HSP 1 Score: 90.9 bits (224), Expect = 7.4e-15
Identity = 85/138 (61.59%), Postives = 98/138 (71.01%), Query Frame = 0


Query: 1   MASIKAVAIVAFELG-----VSESRVARKDLGL---GVGTGVGLGLGLGGGSGSGT--GS 60
           MA+I+  A+VAF LG     VSE+RVARKDLG+   GVG G+G G+GLGGGSGSG+  G+
Sbjct: 1   MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGA 60

Query: 61  GSGSGSGSSSASSSHSSSSSS----GSDAGSYAGSYAGSRAGS----------------- 105
           GSGSGSGSSS+SSS+SSSSSS    GS+AGSYAGSYAGSRAGS                 
Sbjct: 61  GSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRGSGSGSGYGGG 120

[Close]

BLAST of Tan0022738 vs. ExPASy TrEMBL
Match: A0A6J1JK06 (putative glycine-rich cell wall structural protein 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485793 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.7e-15
Identity = 80/118 (67.80%), Postives = 92/118 (77.97%), Query Frame = 0


Query: 1   MASIKAVAIVAFELG----VSESRVARKDLGL---GVGTGVGLGLGLG-GGSGSGTGSGS 60
           MAS   + ++ F L     VS++RVARKDLGL   G+G G+G G+GLG GGSGSG+GSGS
Sbjct: 1   MASFNTLLVLCFLLSFSAIVSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSSSASSSHSSSSSSGSDAGSYAGSYAGSRAGSGS------GSGYGEGHGYGKG 105
           GSGSGSSS+SSS+SSSSSSGS AGS AGSYAGSRAGSGS      G GYGEGHGYG+G
Sbjct: 61  GSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGRNRNGGEGYGEGHGYGEG 118

[Close]

BLAST of Tan0022738 vs. ExPASy TrEMBL
Match: A0A0A0LW94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278490 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.7e-15
Identity = 86/131 (65.65%), Postives = 95/131 (72.52%), Query Frame = 0


Query: 1   MASIKAVAIVAFELGVS-----ESRVARKDL-----GLGVGTGVGLGLGLGGGSGS--GT 60
           MASIKA+A++   L +S       RVARKDL     GLGVG G+GLGLGLGGGSGS  G 
Sbjct: 1   MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGAGA 60

Query: 61  GSGSGSGSGSSSASSSHSSSSS-----SGSDAGSYAGSYAGSRAGSGSGS---------- 105
           GSGSGSGSGS S+SSSHSSSSS     +GS+AGSYAGSYAGSRAGSGSGS          
Sbjct: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGSRNGASGGEGH 120

[Close]

BLAST of Tan0022738 vs. ExPASy TrEMBL
Match: A0A6J1E1T0 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430015 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.7e-15
Identity = 92/150 (61.33%), Postives = 98/150 (65.33%), Query Frame = 0


Query: 1   MASIKAVAIVAFELG----VSESRVARKDLGL-------GVGTGVGLGLGLGGGSGSGTG 60
           MASI+AV+I+A  L     VSESRVAR DLGL       G+GTGVGLGLG G GSGSG+G
Sbjct: 1   MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLG-GSGSGSGSG 60

Query: 61  SGSGSGSGSSSASSSHSSSSSSGSDAGSYAGSYAGSRAGSGS------------------ 110
           SGSGSGSGSSSASSSHSSSSSSGSDAGS AGSYAGS AGSGS                  
Sbjct: 61  SGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGY 120

[Close]

BLAST of Tan0022738 vs. ExPASy TrEMBL
Match: A0A6J1C497 (putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3673 GN=LOC111007250 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.6e-15
Identity = 85/138 (61.59%), Postives = 98/138 (71.01%), Query Frame = 0


Query: 1   MASIKAVAIVAFELG-----VSESRVARKDLGL---GVGTGVGLGLGLGGGSGSGT--GS 60
           MA+I+  A+VAF LG     VSE+RVARKDLG+   GVG G+G G+GLGGGSGSG+  G+
Sbjct: 1   MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGA 60

Query: 61  GSGSGSGSSSASSSHSSSSSS----GSDAGSYAGSYAGSRAGS----------------- 105
           GSGSGSGSSS+SSS+SSSSSS    GS+AGSYAGSYAGSRAGS                 
Sbjct: 61  GSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRGSGSGSGYGGG 120

[Close]

BLAST of Tan0022738 vs. ExPASy TrEMBL
Match: A0A6J1JHN1 (glycine-rich cell wall structural protein 2-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111485793 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.1e-15
Identity = 81/111 (72.97%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MASIKAVAIVAFELG----VSESRVARKDLGL-------GVGTGVGLGLGLGGGSGSGTG 60
           MASI+AV+I+A  L     VSESRVAR DLGL       G+GTGVGLGLG  GGSGSG+G
Sbjct: 1   MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGGSGSGSG 60

Query: 61  SGSGSGSGSSSASSSHSSSSSSGSDAGSYAGSYAGSRAGSGSGSGYGEGHG 101
           SGSGSGSGSSS+SSS+SSSSSSGS AGS AGSYAGSRAGSGSGSG G   G
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGSGAGSEAG 111

[Close]

BLAST of Tan0022738 vs. TAIR 10
Match: AT4G30460.1 (glycine-rich protein )

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-13
Identity = 70/108 (64.81%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 9   IVAFELGVSESRVARKDLGL---GVGTGVGLGLGL-GGGSGSGTGSGSGSGSGSSSASSS 68
           I+A  + VSESRVARKDLGL   G+G G+G+G+G+ GGGSGSG G+GSGSG G SS+SSS
Sbjct: 16  ILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGGGSSSSSS 75

Query: 69  HSSSSSS-----GSDAGSYAGSYAGSRAGSGSGSGYGEGHGYGKGDDG 108
            SSSSSS     G DAGS AGSYAGS AGSGSG   G G G G G  G
Sbjct: 76  SSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGG 123

[Close]

BLAST of Tan0022738 vs. TAIR 10
Match: AT4G30450.1 (glycine-rich protein )

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-12
Identity = 61/96 (63.54%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 7   VAIVAFELGVSESRVARKDL-----GLGVGTGVGLGLGLGGGSGSGTGSGSGSGSG---- 66
           + +++  + ++ESR+ARKDL     G+G+G GVGLG+GLGGGSGSG G+GSGSGSG    
Sbjct: 12  LVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSGSRSS 71

Query: 67  SSSASSSHSSSSSSGSDAGSYAGSYAGSRAGSGSGS 94
           SSS+SSS SSSS SG  AGS AGS+AGSRAGSGSG+
Sbjct: 72  SSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSGN 107

The following BLAST results are available for this feature:

BLAST of Tan0022738 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0022738 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879815.1	1.5e-15	62.50	putative per-hexamer repeat protein 5 [Benincasa hispida]	[more]
XP_022988595.1	5.6e-15	67.80	putative glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita maxim...	[more]
XP_022921884.1	5.6e-15	61.33	glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG658974...	[more]
XP_011656027.1	5.6e-15	65.65	glycine-rich protein DOT1 [Cucumis sativus] >KGN65264.1 hypothetical protein Csa...	[more]
XP_022135238.1	7.4e-15	61.59	putative glycine-rich cell wall structural protein 1 [Momordica charantia]	[more]

BLAST of Tan0022738 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JK06	2.7e-15	67.80	putative glycine-rich cell wall structural protein 1 isoform X2 OS=Cucurbita max...	[more]
A0A0A0LW94	2.7e-15	65.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278490 PE=4 SV=1	[more]
A0A6J1E1T0	2.7e-15	61.33	glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1C497	3.6e-15	61.59	putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3...	[more]
A0A6J1JHN1	6.1e-15	72.97	glycine-rich cell wall structural protein 2-like isoform X3 OS=Cucurbita maxima ...	[more]

BLAST of Tan0022738 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30460.1	2.5e-13	64.81	glycine-rich protein	[more]
AT4G30450.1	1.6e-12	63.54	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..88
None	No IPR available	PANTHER	PTHR38934	HYPHALLY REGULATED CELL WALL PROTEIN 1	coord: 5..105
None	No IPR available	PANTHER	PTHR38934:SF15	GLYCINE-RICH PROTEIN	coord: 5..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0022738.1	Tan0022738.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane