Tan0022725 (gene) Snake gourd v1

Overview
NameTan0022725
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionsuccinate dehydrogenase subunit 7B, mitochondrial-like
LocationLG09: 72155872 .. 72160779 (+)
RNA-Seq ExpressionTan0022725
SyntenyTan0022725
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATATTCCCACTTTCTCTATAGAGTTGAAAGAACTCGAAGGTTTTCGAAGGGCAAAGCCCACTTTACCACATTTCTCCCTAATCTCACCATCACAGCTCTCCTCTTCCTTCTCGCATCTTGTGCTCAGGAACAATGGCGTTTTTGCTTAACAAAACCACTCTTGCTTCTCATTTCCGATCTCAATCCCAGGTTCCTTCTCCTTCGATCGCCTCTTAGTTTATCTTTTTCCTTAATCGTTCTTTCGTTCTCTCACTCAATCTTTTGAGTTTTTGGTTGATCAATAGGTGGATCCTTCATCACTCTCGCGCCGTGGATTCCACGTCGAACCAGGGACTCGTGAAAAGGCTGTAAGCATGTCTAACTTTCTTCTTGCTATTTTCTAGCTTTAATTGTCCAAGTAGCGGTTTATTCCATCGTTTGGATAATAAGTTCCTTATAGCTTACCGCAGCTCCATTAAGTTAATTGATATCTGGTTGTTACATGTTCAGTTTTTCTCGTATGGCTGTCTATCTAGTTCATTTCGCTTTGTCGTGTCTGAATCTTTCGACGCCAGTATAGATGGATGCTTTTCGAAGCTGTTCAGATCAAACTGTTTTAACTCCTGTATTTAGGTCCATGAAATTAGAGGGGATGGGGGGTTGCCGGGGTGTTTTCTTAACTAATCTGTTCCCGTGCTAATGGCATGAAACCTTGGTGAAAAGTGTTATGTTCCTTGTATTGGCGAAAGTTACGGGTTTGCTTTGCATGTTTGTAGTATGTTCTCGAACTCCGCAAGTACGATTTCCACAGCGATACTTGCTTAAGCACTTTTTTTCAATAATATTTAGTAAATGTATACCATATTTTTGGTTCCCCTTTTGCATTTGTTTGATGCAGTTTAGTTGCTAAGTATGTGATTGCTATGATTAATTGCTGCATTGAGTTTTACTATGTTGAATGGCAGTTATTAGCTGAGGACCCTTCTCTAAGGCGGTTCAGATCACACAAGAAAGGTGTCTCTCGAATCAAAAGAATTGGAGATGTTCTGACAATTGTGGTTGTTGCAGGTATTACTCATTTTTCCATTAAATAAATACTTATCTCTTTGTCCAGTGGGGTCCTTGCTCTGCTATCTGCTATTATAGCAACATCGATGCAGATGGTGTATATGACGACCTTCTTAGAGGTGAAAATTGGCTTCATGCATTTTGAACGGAAACAAACATGAAGTGGCATATGCTTGTTTTTTGGTTGACTCATAATTATGTTAGATGAAAAGTATCTCAAGTAAACTTAGAACTTAGAAGGTAGCATGAAGTATATGGTATAGTGTGTTTTTAGCAGTCTCGTGGGATATCAATGATGCAAAAGAAGGAACTTGAGATTCAAATGTAGAACAAAATGGTATGTGGTCATATAAATCCTAATGCATTGTGTGGATTTTGGATTTATCTTCTAAGAATTTTACCAATATGTGGATTTTGGAGATGAGATTTCATTTAGTTCTACCCTTTGTTCAAACTTACCATGCTGTTGGCCAAACCTGGTTCAGGTTCCCTAATTTTACGATAGTGGTAACAACCAGATTATTATTGGTGTCTTTTAGACTTTAGTGGCATTATCCTTGAGTTCTATGCTATCCATAGATGTTAAAGATGATACAGGTAGCTACCAACGGGTTGATTGAAAGACTAGGTAGCTATATTTTCTGTTTATTTAAATAGTGCATGCGCTTTTCAACTTTAGTAGCTGGAATGAAATACTTCATTTTATCATGATGATACTTAGCCGTATTTATTGGATCAAGTGGTAACTGCACATTCAAGTGGCTTATTTTCTTTACAATTTTGATTCTCTTTACCAAATGTTTGTGTAGAATGATGCTTGAGTTTAATGAATGGTTAAAATTATCTATGACCATCCTTAAATTTTTTGACATCAAGATTAATTTGTCTTTGCACTGTATTAAAATGTCACACTGACCTTAGAGACCATTTGAAAATTAAATCTATTCTCAAAATTTTAGAGGTTGAAATACTACCTTCTCAACTTAATGAATGGACAGGAGTAATTTTTCTCAAGCACTACAAGTGTTCCTTTTTTCACAAAAATATTGCAGTTGCCAAAATGATTGACCCAATCCAGTCCAAACACCTTCCCCGCACCCCTTCCCGTTCCTTCATCTTATATCTCCTTGAGTTTTGGCCACTCAGGAAGGACCTTAAATCTTGAGCTTTCCATTGCCAAAAAAGTAGAAGAGGAAGAATGCTTACACAGAAAGGAGGAGGGCTCCTTGATCCTTATGACAATATAGATTACAATCAAAATGCTGAGGAGTGCATGGCTCAATTGGCATCAAGTATAGACTTATGAGCAAGAGGTCATGGATTCGAATCCTTCTGCTCTCTAAAATGTTTTGAACTCAAAAAGAAAAAAAAGAAAGCTAAAGATTACAATATGCTAAAACAAAAAGGATAATATTCTTGTAAAACTCTCCTAGAAGAGAAGAGCCAAAGAAAATTCTCTCCCAAGCAACATCCATCCAAGCTTTTCTGTCTTTTAAGATTAAAGATTCTTTTCTTGCTTTCTTTCCTTAATTCTCAACAAATTAAAGAAACTGGAGTAACTAAAATTAACATGATCTTGGTTGCTAGTTGATGCCTCCTTATAGCTTGGGGTAAGCAATCCTCAATATTTCTGCAAAACCCCAATCGGGTTAAAAAAAGGTTTTCAGCCACTTGCATTGAAGTTTTTGAGAGACCAACATCTAGAGGCCGGTTGGTCTAAATCCTCCCACAAGTTTTCCCCAAGAACTCACATTTGTGTTTCATATGTGTAAATAAGGATATGTTTCCTTGCCAATTCGGGCATAGCTAAATGGTAAGACACCAATTACCGTCTCAAAGGTTGATGGTTTGATCATCACCTTGCAATTGTTGAGCTAAAGAAAAAAAAAGGATATGTCTTTAAACTAAAAAAAAAAATAGGAGGATATGTCTTCTCAAGCCAGTCATGAGTGTTGATTCTTCTGCGAAGGAGCAAGAAAGTGAAGACCGCCTCTGAACTCCCTATCATATTTACCAACTAAATATACAGCTTTGCATTTTCAGAGTTTGATATGACAATATCATTACATTAGTTGAAGTTGATATTAGCTTCCAGCCTCCAAATGCTAGAACCCTCATCTCCAAAAACATTCATCTCTTTAATTATGTTCAGCAAGGATGCCAATTTCACTGTGCTTCTCTATCATTCAAATTTCTCTTGCTTTCACATTTTTTTGGGGGGGATAAAGAAATGATTAATTTCTCCAAAAATGAAAAACCAAATTAATAGAAAATGAACATTTTTGACTATTAGTTCAGTGAAGCGTGTGAAATTTCTTGAAGTTGGCAATATATTTTGTGCTGTCGCCAAGTTAACTGAGTTTGTTCATGAACATTTGATCTCCCCACAAACTTTATTTCTAAGTTAACTATTAGTGCTTCACATTTGCACCAGGCTTTGTTATGTGAATTGGTATGTTGGAATTTCTAATCTTTATAATTGTGTATTATTTTTCAATGGTATTTATTGCCTTTTATTCTTTCCTTACGTTGTAGTAGGCCTTTCTTCTATATAAGAAACGCAGGGTGTATACTTTTGAATATGATGGAGTATTATTATTCTCTCTAATTTTAGATGGTATTAGAGTATGAGGTTCTGCGTTCGAGCTCATGTAATGTCATTTTCTCTCCAATTAATGTTTATTTATTTCCCTTGTTGAGCCTCCTATAAATTTTCAAGCCCACAAGTGAGGTAGAGTGTTAAAATGTTGATATAATTAAATTTGCTATAACCCATCAGCTTAAACTTTTGGGTTGATGGGTGATTTAACATAGCATGATATCATAAAACATCTTTGATTTCTTGTTTCTATGCCTCGAGCTCTCCTGTGATCATTAGTAAACATCTTTGAACTTTGTTATTGAGTCAATTGAACGTCCTTGTTTATTAATTCAATGGCCACAAAGCCAGACGGATGCTTGACTAAGCAGATTTGGAAGTCGAAAACCCCTAAAATAATCAAGTTAGTTTTGTGGACCCTAGCGTACAAGGACATCAACATTCCAAAGGAAAACCCGCACCATGTGCTATCACCAAGCTTGCCCAAACTAGTTGTTTCTGTGAAGAGACTATTGGTCATTTTTTTTTATCAGCTATTTTTGTGTGGCAGATTGTTGGTTTCAGTGATGGAGCACGTTCAACATAAAACGATGCTTCCATAAAGATATCTAGTTCTTCTCCCTGAAATATTTTGGGCAGGTGATTTAAAGGAAAGAAAAAGATTCTTGGGAATAAATACTTCAAGAGCTGTTTTGTGGGTCATTTGACTAGAAACAAATGACAGAATTTTGAACAACATACATAGAAGTTCTAGAGAAATTTGTAGCCTACCTATGGACCTATGGTCATAGTCTTATGAATGTTCTGATAATGATCTTTCATCATGGGGATCACCATTTTTCTCCTTAATCTCCTCATGCTTGATGGTAGGAAGGATATCTCCTTGCCTCCAAAAAAAAAAAAAAAACAAACTCTGATCTGTTATCTTGGAATTTGATCTTTAGTTTGTTGTATTTTTCAGGATGTTGCTATGAAATCTATGTGAAAGCAACCATGCGAGAAGAAGCTAGACAGACAAAGACTGCCAGCGGAAGTACATGATGGAATTAGTACCATCCAGTGACAATTAAAATGTCCGGCAAAAGTTTCCAATGCTTTTATTTGTGTGCTAAATAAATGTTTTTCAAGCACCAAATTCTATTTGCCCAATTTCTGTTAGGTTTTAATCATCAATAATATTTTTTTGACCTGTATCAACCTAAGGGATGTCAGAATACATTTTTTTTTTTTTTAATCAATGTGAGCACCTTTTATTACCTTA

mRNA sequence

CATATTCCCACTTTCTCTATAGAGTTGAAAGAACTCGAAGGTTTTCGAAGGGCAAAGCCCACTTTACCACATTTCTCCCTAATCTCACCATCACAGCTCTCCTCTTCCTTCTCGCATCTTGTGCTCAGGAACAATGGCGTTTTTGCTTAACAAAACCACTCTTGCTTCTCATTTCCGATCTCAATCCCAGGTGGATCCTTCATCACTCTCGCGCCGTGGATTCCACGTCGAACCAGGGACTCGTGAAAAGGCTTTATTAGCTGAGGACCCTTCTCTAAGGCGGTTCAGATCACACAAGAAAGGTGTCTCTCGAATCAAAAGAATTGGAGATGTTCTGACAATTGTGGTTGTTGCAGGATGTTGCTATGAAATCTATGTGAAAGCAACCATGCGAGAAGAAGCTAGACAGACAAAGACTGCCAGCGGAAGTACATGATGGAATTAGTACCATCCAGTGACAATTAAAATGTCCGGCAAAAGTTTCCAATGCTTTTATTTGTGTGCTAAATAAATGTTTTTCAAGCACCAAATTCTATTTGCCCAATTTCTGTTAGGTTTTAATCATCAATAATATTTTTTTGACCTGTATCAACCTAAGGGATGTCAGAATACATTTTTTTTTTTTTTAATCAATGTGAGCACCTTTTATTACCTTA

Coding sequence (CDS)

ATGGCGTTTTTGCTTAACAAAACCACTCTTGCTTCTCATTTCCGATCTCAATCCCAGGTGGATCCTTCATCACTCTCGCGCCGTGGATTCCACGTCGAACCAGGGACTCGTGAAAAGGCTTTATTAGCTGAGGACCCTTCTCTAAGGCGGTTCAGATCACACAAGAAAGGTGTCTCTCGAATCAAAAGAATTGGAGATGTTCTGACAATTGTGGTTGTTGCAGGATGTTGCTATGAAATCTATGTGAAAGCAACCATGCGAGAAGAAGCTAGACAGACAAAGACTGCCAGCGGAAGTACATGA

Protein sequence

MAFLLNKTTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRIGDVLTIVVVAGCCYEIYVKATMREEARQTKTASGST
Homology
[Close]
BLAST of Tan0022725 vs. ExPASy Swiss-Prot
Match: Q3E870 (Succinate dehydrogenase subunit 7B, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH7B PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-30
Identity = 65/93 (69.89%), Postives = 78/93 (83.87%), Query Frame = 0 

Query: 1  MAFLLNKTTLASHFRSQSQV---DPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKG 60
          MAFLLN  +++SH RS S     D  S+SRRGFH+EPGTREKALLAED +L+RF+SHKK 
Sbjct: 1  MAFLLNNASISSHLRSSSSQKTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKS 60

Query: 61 VSRIKRIGDVLTIVVVAGCCYEIYVKATMREEA 91
          V ++KRIGDVLT+VVVAGCCYEIYVKA M++EA
Sbjct: 61 VHKLKRIGDVLTVVVVAGCCYEIYVKAVMKKEA 93

[Close]
BLAST of Tan0022725 vs. ExPASy Swiss-Prot
Match: Q9C5E8 (Succinate dehydrogenase subunit 7A, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH7A PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.2e-28
Identity = 67/93 (72.04%), Postives = 77/93 (82.80%), Query Frame = 0 

Query: 1  MAFLLNKTTLASHFRSQSQVDPSSL--SRRGFHVEPGTREKALLAEDPSLRRFRSHKKGV 60
          MAFLLN T+++SH RS SQ    +L  SRRGFHVE G REKALLAED SLRRF+SHKKGV
Sbjct: 1  MAFLLN-TSISSHLRSSSQKTDGALAQSRRGFHVELGAREKALLAEDASLRRFKSHKKGV 60

Query: 61 SRIKRIGDVLTIVVVAGCCYEIYVKATMREEAR 92
           R+KRIGDVLT+VVVAGCCYEIY +  MR+EA+
Sbjct: 61 HRLKRIGDVLTVVVVAGCCYEIYAR-VMRKEAQ 91

[Close]
BLAST of Tan0022725 vs. ExPASy Swiss-Prot
Match: Q6H611 (Succinate dehydrogenase subunit 7, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH7 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-11
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 27 RRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKRIGDVLTIVVVAGCCYEIYVKA 85
          RRGFHVE G REKALL ED +L+RF+S+K  V ++ ++G++LT VV+  C YEI   A
Sbjct: 31 RRGFHVELGAREKALLEEDTALKRFKSYKNSVKQVSKVGNILTGVVLFACAYEIVALA 88

[Close]
BLAST of Tan0022725 vs. NCBI nr
Match: XP_023529214.1 (succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192.2 bits (487), Expect = 2.2e-45
Identity = 97/100 (97.00%), Postives = 98/100 (98.00%), Query Frame = 0 

Query: 1   MAFLLNKTTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLLNKTT ASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLNKTTFASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKRIGDVLTIVVVAGCCYEIYVKATMREEARQTKTASGST 101
           IK+IGDVLTIVVVAGCCYEIYVKATMREEARQ KTASGST
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGST 100

[Close]
BLAST of Tan0022725 vs. NCBI nr
Match: XP_022969157.1 (succinate dehydrogenase subunit 7A, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 0 

Query: 1   MAFLLNKTTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLLNKTTLASHFRSQSQ DPS+LSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLNKTTLASHFRSQSQADPSTLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKRIGDVLTIVVVAGCCYEIYVKATMREEARQTKTASGST 101
           IK+IGDVLTIVVVAGCCYEIYV+ATMREEARQ KTASGST
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVRATMREEARQAKTASGST 100

[Close]
BLAST of Tan0022725 vs. NCBI nr
Match: XP_022135509.1 (succinate dehydrogenase subunit 7B, mitochondrial-like [Momordica charantia])

HSP 1 Score: 189.1 bits (479), Expect = 1.8e-44
Identity = 94/100 (94.00%), Postives = 97/100 (97.00%), Query Frame = 0 

Query: 1   MAFLLNKTTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAF LN+TTLASHFRSQSQ DPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKRIGDVLTIVVVAGCCYEIYVKATMREEARQTKTASGST 101
           IKR+GD+LTIVVVAGCCYEIYVKATMREEARQ KTASGST
Sbjct: 61  IKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGST 100

[Close]
BLAST of Tan0022725 vs. NCBI nr
Match: KAG6587488.1 (Succinate dehydrogenase subunit 7B, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021475.1 Succinate dehydrogenase subunit 7B, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.7 bits (478), Expect = 2.4e-44
Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 0 

Query: 1   MAFLLNKTTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLLNKT LAS FRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKRIGDVLTIVVVAGCCYEIYVKATMREEARQTKTASGST 101
           IK+IGDVLTIVVVAGCCYEIYVKATMREEARQ KTASGST
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGST 100

[Close]
BLAST of Tan0022725 vs. NCBI nr
Match: XP_022933942.1 (succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 186.0 bits (471), Expect = 1.5e-43
Identity = 95/100 (95.00%), Postives = 96/100 (96.00%), Query Frame = 0 

Query: 1   MAFLLNKTTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLLNKT LAS FRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKRIGDVLTIVVVAGCCYEIYVKATMREEARQTKTASGST 101
           IK+IGDVLTIVVVAGCCYEIYVKATMREEARQ  TASGST
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGST 100

[Close]
BLAST of Tan0022725 vs. ExPASy TrEMBL
Match: A0A6J1HVK4 (succinate dehydrogenase subunit 7A, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111468234 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.2e-45
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 0 

Query: 1   MAFLLNKTTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLLNKTTLASHFRSQSQ DPS+LSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLNKTTLASHFRSQSQADPSTLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKRIGDVLTIVVVAGCCYEIYVKATMREEARQTKTASGST 101
           IK+IGDVLTIVVVAGCCYEIYV+ATMREEARQ KTASGST
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVRATMREEARQAKTASGST 100

[Close]
BLAST of Tan0022725 vs. ExPASy TrEMBL
Match: A0A6J1C1M2 (succinate dehydrogenase subunit 7B, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111007450 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 8.8e-45
Identity = 94/100 (94.00%), Postives = 97/100 (97.00%), Query Frame = 0 

Query: 1   MAFLLNKTTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAF LN+TTLASHFRSQSQ DPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKRIGDVLTIVVVAGCCYEIYVKATMREEARQTKTASGST 101
           IKR+GD+LTIVVVAGCCYEIYVKATMREEARQ KTASGST
Sbjct: 61  IKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGST 100

[Close]
BLAST of Tan0022725 vs. ExPASy TrEMBL
Match: A0A6J1F188 (succinate dehydrogenase subunit 7B, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111441204 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 7.5e-44
Identity = 95/100 (95.00%), Postives = 96/100 (96.00%), Query Frame = 0 

Query: 1   MAFLLNKTTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLLNKT LAS FRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKRIGDVLTIVVVAGCCYEIYVKATMREEARQTKTASGST 101
           IK+IGDVLTIVVVAGCCYEIYVKATMREEARQ  TASGST
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGST 100

[Close]
BLAST of Tan0022725 vs. ExPASy TrEMBL
Match: A0A6J1E5D6 (succinate dehydrogenase subunit 7B, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111429643 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.1e-42
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 1   MAFLLNKTTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLL KT+LASHFRSQSQVDPSS SRRGFH+EPGTREKALLAEDPSLRRFRSHKKGV+R
Sbjct: 12  MAFLLTKTSLASHFRSQSQVDPSSPSRRGFHIEPGTREKALLAEDPSLRRFRSHKKGVAR 71

Query: 61  IKRIGDVLTIVVVAGCCYEIYVKATMREEARQTKTASGST 101
           IK+IGDVLTIVVVAGCCYEIYVKATMREEARQ K AS ST
Sbjct: 72  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKAASEST 111

[Close]
BLAST of Tan0022725 vs. ExPASy TrEMBL
Match: A0A6J1JM91 (succinate dehydrogenase subunit 7A, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111485669 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.0e-42
Identity = 92/100 (92.00%), Postives = 93/100 (93.00%), Query Frame = 0 

Query: 1   MAFLLNKTTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLL KT LASHFRSQSQVDPSS SRRGFHVEPG REKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLTKTALASHFRSQSQVDPSSPSRRGFHVEPGAREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKRIGDVLTIVVVAGCCYEIYVKATMREEARQTKTASGST 101
           IK+IGDVLTIVVVAGCCYEIYVKATMREEARQ K AS ST
Sbjct: 61  IKQIGDVLTIVVVAGCCYEIYVKATMREEARQAKAASEST 100

[Close]
BLAST of Tan0022725 vs. TAIR 10
Match: AT5G62575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47833.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 134.0 bits (336), Expect = 6.5e-32
Identity = 65/92 (70.65%), Postives = 78/92 (84.78%), Query Frame = 0 

Query: 1  MAFLLNKTTLASHFRSQSQV--DPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGV 60
          MAFLLN  +++SH RS S    D  S+SRRGFH+EPGTREKALLAED +L+RF+SHKK V
Sbjct: 1  MAFLLNNASISSHLRSSSSQTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKSV 60

Query: 61 SRIKRIGDVLTIVVVAGCCYEIYVKATMREEA 91
           ++KRIGDVLT+VVVAGCCYEIYVKA M++EA
Sbjct: 61 HKLKRIGDVLTVVVVAGCCYEIYVKAVMKKEA 92

[Close]
BLAST of Tan0022725 vs. TAIR 10
Match: AT5G62575.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47833.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 133.7 bits (335), Expect = 8.5e-32
Identity = 65/93 (69.89%), Postives = 78/93 (83.87%), Query Frame = 0 

Query: 1  MAFLLNKTTLASHFRSQSQV---DPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKG 60
          MAFLLN  +++SH RS S     D  S+SRRGFH+EPGTREKALLAED +L+RF+SHKK 
Sbjct: 1  MAFLLNNASISSHLRSSSSQKTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKS 60

Query: 61 VSRIKRIGDVLTIVVVAGCCYEIYVKATMREEA 91
          V ++KRIGDVLT+VVVAGCCYEIYVKA M++EA
Sbjct: 61 VHKLKRIGDVLTVVVVAGCCYEIYVKAVMKKEA 93

[Close]
BLAST of Tan0022725 vs. TAIR 10
Match: AT3G47833.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62575.2); Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 124.4 bits (311), Expect = 5.1e-29
Identity = 67/93 (72.04%), Postives = 77/93 (82.80%), Query Frame = 0 

Query: 1  MAFLLNKTTLASHFRSQSQVDPSSL--SRRGFHVEPGTREKALLAEDPSLRRFRSHKKGV 60
          MAFLLN T+++SH RS SQ    +L  SRRGFHVE G REKALLAED SLRRF+SHKKGV
Sbjct: 1  MAFLLN-TSISSHLRSSSQKTDGALAQSRRGFHVELGAREKALLAEDASLRRFKSHKKGV 60

Query: 61 SRIKRIGDVLTIVVVAGCCYEIYVKATMREEAR 92
           R+KRIGDVLT+VVVAGCCYEIY +  MR+EA+
Sbjct: 61 HRLKRIGDVLTVVVVAGCCYEIYAR-VMRKEAQ 91

The following BLAST results are available for this feature:
BLAST of Tan0022725 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3E8701.2e-3069.89Succinate dehydrogenase subunit 7B, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
Q9C5E87.2e-2872.04Succinate dehydrogenase subunit 7A, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
Q6H6111.6e-1155.17Succinate dehydrogenase subunit 7, mitochondrial OS=Oryza sativa subsp. japonica... [more]
BLAST of Tan0022725 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023529214.12.2e-4597.00succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita pepo subsp. pe... [more]
XP_022969157.11.1e-4495.00succinate dehydrogenase subunit 7A, mitochondrial-like [Cucurbita maxima][more]
XP_022135509.11.8e-4494.00succinate dehydrogenase subunit 7B, mitochondrial-like [Momordica charantia][more]
KAG6587488.12.4e-4496.00Succinate dehydrogenase subunit 7B, mitochondrial, partial [Cucurbita argyrosper... [more]
XP_022933942.11.5e-4395.00succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita moschata][more]
BLAST of Tan0022725 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HVK45.2e-4595.00succinate dehydrogenase subunit 7A, mitochondrial-like OS=Cucurbita maxima OX=36... [more]
A0A6J1C1M28.8e-4594.00succinate dehydrogenase subunit 7B, mitochondrial-like OS=Momordica charantia OX... [more]
A0A6J1F1887.5e-4495.00succinate dehydrogenase subunit 7B, mitochondrial-like OS=Cucurbita moschata OX=... [more]
A0A6J1E5D63.1e-4291.00succinate dehydrogenase subunit 7B, mitochondrial-like OS=Cucurbita moschata OX=... [more]
A0A6J1JM917.0e-4292.00succinate dehydrogenase subunit 7A, mitochondrial-like OS=Cucurbita maxima OX=36... [more]
BLAST of Tan0022725 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G62575.16.5e-3270.65unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G62575.28.5e-3269.89unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G47833.15.1e-2972.04unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034573Succinate dehydrogenase subunit 7, mitochondrialPANTHERPTHR36041SUCCINATE DEHYDROGENASE SUBUNIT 7A, MITOCHONDRIAL-RELATEDcoord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0022725.1Tan0022725.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
molecular_function GO:0043495 protein-membrane adaptor activity