Tan0022515 (gene) Snake gourd v1

Overview


Name	Tan0022515
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	SWIB domain-containing protein
Location	LG10: 3236420 .. 3238811 (+)
RNA-Seq Expression	Tan0022515
Synteny	Tan0022515

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGGGCAGACGGGCCGAAGGCTGTCCAAATGTTGCGTTTGGACTTGAGCTGACTATTGCCCTCTTCGTTTTCGGCGAGTTTTTCTATCTCATTCTTCTCCTCCTCACTGATCCCTCAGCCGGAAACTGACTGCAACATCAGAACGACCTACAATGTCGTCTGGATTCAGCAATGGCATTAGGGTTTTCAGAGGCTGTAGAGCTTTATTAGCTCCTTCGAAATCCTCAGCTGCTGTTCCCGCCGCGGCCGGCACCGCGGCGGCCAAGTCGAAGACGACCTCGAAATCGAAGGAGAAGGCTCCACCGAGGTCCGACACTGCTGCTTCTGCAGCCGCGCCCAGGCCGAAAGTCAAAAGGGAAACGACTCGACCGACGGGGATTCTGAAGGTCGCCCAGGTTTCTCCGGCGTTGAGCAACTTCTTGGGCGTATCGGAGGTTTCTCGCACCAACGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCCATAACCTGCAGGTAAACCTTCTTTCCACTGCTATCTATGTATTTGATCGCGTAGATTGTTGAGTATGCCAGAACCATTGTGGTTTTTAGGGGAATGGGTTGTTATCTGCGATTTTCGTTGAATTGTTTGCTCCGCCAATTGATTTTAGGGTCAATATGAAAGAAATTTCATCTTCAAGTAAACAAACTAGTTCCCGGTACCTCCAGTTTTCTTTACCCTACACCGCAAGTAAAATTGGGAACTCGTGTATTTCTATGGAAATGACTCTGTCTTGTCTGGATTAAGAGTTTGTAGCAATTTCTTAGAAAGTATTGGCGTCCCTCAAGTCTTAATAGACGTTAGAAGAAAACTTCATGGGGAAGTCCGTTACAGTGGTGGAGCTTATCAAAATTTTCGAAAGGCCAATTGTTCATGCGTTTAGACTTGTAAATGCCTTATGAAACTGTTTTGAATGAAACCTTCCGTAATTCTTTCTTTTCGTATGGTGATAAAAATCAAAATCCACGAGCTATCTTGAAACATTGGAATTGAAAATATTTCAGTGTCTAAACATGGAGTATCCATATGATTGACTTCTGCCTGGATTACATCAAGTAAAGCTTTTGCACGTCTAGGTCTATCCCTCTCTCTTTCAACGAGAATACTTAACTCATGAAAGGTTGAAATATTTGATAAAGGGATTGCATAGTATAACTTTATAAAGTGTTGAAATTGATAGTTTGCTTTTAGAAATATTTGGTACTGATCACTGAGATGTGACTCCCTGCCTTCTTTTTTATGATAAGAAACGATATGGTATTAAGAGAAAAGTAGGGGATAATACAATGGGGTAGGTAAAGCTAAAGGAAAGCTTTTCATTGTTAATATTGTAGAAAGGTTCCACCTACCCAAGATTTATAGTCCTACGAGTTTGCTTGACATAGATGTAATAAGATCAACATCGACCCACACAAACTCACTCGGACACTCACAAATATCTAAAAATTGTAGAAAAGTTGTAATTACAAAAAAATTTCATGTGACTAAACCCCACCAAGAAGCAGCAAGTTGTACATTTATCCAAAAAAGACTCAAAAAGGACTTATCTTCGAAGGTCCTCCGATTCCTTTCCAACCAAATGTGCCACAATAATGCCCTAGCCGCACAATTCACAAAATATTTTCCTTTTTGGACATCTTCCACCCTGAAAAAACGACTCCCTGTCTTCTGTAATGTATTTTTTGTGGGAACGACAATTAAGCCAGAGTTAACATAAGCTTGAAGATACTAAATATCATCCAAGCTTCTTCCATATGAAATATTGTAGGTCAGGGTTGTCTGGTGGAAAAAATTGTTAAGCTGCACGCAAGTACCCATAGTTTTGAAAGAAAAAAACAAACAGCCTAGGCCTTAACAGCTCGATATTTCATTTGAGTTGATAATTAGGGAGTTTCTGTTCTCCAAGCAATGGCATAATGAGATATTTCATTGTCTTGCCTGCAGAATCCTGCTAACAAAAGAGAGATCTTCTGTGACGATAAACTTAAAGCCATATTTGAAGGAAAGGAAAAGGTCGGTTTCTTAGAGATTGCCAAATTGCTCGCTCGGCATTTTGTGAAGAACTGATCAATACAGAAGATGAGAGATCAACTTCCAGTCCATTTTGTGGCTTTTTATCTTGCAGCCTCAGCTCTTATGGTGGAGGAATTACATTCTGACTTGTCTCTTCCCAATCCTTCTGGTTGTTGATAGTCTTGTTTGGCTCATGTTTTTTTAGGCAAATATTGATCAACTTCTGTGCATTTTTAAGTTTTATTTCAATGTAATGTCTGGTAAGTTTCTTGTTGGGCATTTTATAAAAAAAGAAAGCACCAAATTGGATGGCTTCCATTTTCTTCACAAGCCTAAGCTTCTTTGTGCATGGTCAAC

mRNA sequence

TATGGGCAGACGGGCCGAAGGCTGTCCAAATGTTGCGTTTGGACTTGAGCTGACTATTGCCCTCTTCGTTTTCGGCGAGTTTTTCTATCTCATTCTTCTCCTCCTCACTGATCCCTCAGCCGGAAACTGACTGCAACATCAGAACGACCTACAATGTCGTCTGGATTCAGCAATGGCATTAGGGTTTTCAGAGGCTGTAGAGCTTTATTAGCTCCTTCGAAATCCTCAGCTGCTGTTCCCGCCGCGGCCGGCACCGCGGCGGCCAAGTCGAAGACGACCTCGAAATCGAAGGAGAAGGCTCCACCGAGGTCCGACACTGCTGCTTCTGCAGCCGCGCCCAGGCCGAAAGTCAAAAGGGAAACGACTCGACCGACGGGGATTCTGAAGGTCGCCCAGGTTTCTCCGGCGTTGAGCAACTTCTTGGGCGTATCGGAGGTTTCTCGCACCAACGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCCATAACCTGCAGAATCCTGCTAACAAAAGAGAGATCTTCTGTGACGATAAACTTAAAGCCATATTTGAAGGAAAGGAAAAGGTCGGTTTCTTAGAGATTGCCAAATTGCTCGCTCGGCATTTTGTGAAGAACTGATCAATACAGAAGATGAGAGATCAACTTCCAGTCCATTTTGTGGCTTTTTATCTTGCAGCCTCAGCTCTTATGGTGGAGGAATTACATTCTGACTTGTCTCTTCCCAATCCTTCTGGTTGTTGATAGTCTTGTTTGGCTCATGTTTTTTTAGGCAAATATTGATCAACTTCTGTGCATTTTTAAGTTTTATTTCAATGTAATGTCTGGTAAGTTTCTTGTTGGGCATTTTATAAAAAAAGAAAGCACCAAATTGGATGGCTTCCATTTTCTTCACAAGCCTAAGCTTCTTTGTGCATGGTCAAC

Coding sequence (CDS)

ATGTCGTCTGGATTCAGCAATGGCATTAGGGTTTTCAGAGGCTGTAGAGCTTTATTAGCTCCTTCGAAATCCTCAGCTGCTGTTCCCGCCGCGGCCGGCACCGCGGCGGCCAAGTCGAAGACGACCTCGAAATCGAAGGAGAAGGCTCCACCGAGGTCCGACACTGCTGCTTCTGCAGCCGCGCCCAGGCCGAAAGTCAAAAGGGAAACGACTCGACCGACGGGGATTCTGAAGGTCGCCCAGGTTTCTCCGGCGTTGAGCAACTTCTTGGGCGTATCGGAGGTTTCTCGCACCAACGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCCATAACCTGCAGAATCCTGCTAACAAAAGAGAGATCTTCTGTGACGATAAACTTAAAGCCATATTTGAAGGAAAGGAAAAGGTCGGTTTCTTAGAGATTGCCAAATTGCTCGCTCGGCATTTTGTGAAGAACTGA

Protein sequence

MSSGFSNGIRVFRGCRALLAPSKSSAAVPAAAGTAAAKSKTTSKSKEKAPPRSDTAASAAAPRPKVKRETTRPTGILKVAQVSPALSNFLGVSEVSRTNAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGKEKVGFLEIAKLLARHFVKN

Homology

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BLAST of Tan0022515 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-09
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 38  KSKTTSKSKEKAPPRSDTAASAAAPRPKVKRETTRPTGILKVAQVSPALSNFLGVSEVSR 97
           K  T SK +     ++D+         K    +  P    KV  +S +L++ LG  E++R
Sbjct: 84  KEITVSK-RSSGEEKNDSETKGTHVEKKKGTVSKSPISTRKVT-LSKSLASLLGEHELTR 143

Query: 98  TNAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGKEKVGFLEIAKLLARHFVK 154
           T  V+++W+YIK HNLQNP NK+EI CD+KL+ I  GK      E+ K+LA H  +
Sbjct: 144 TEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELIL-GK-STNMFEMHKILASHMTE 195

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BLAST of Tan0022515 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.0e-09
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 34  TAAAKSKTTSKSKEKAPPRSDTAASAAAPRPKVKRETTRPTGILKVAQVSPALSNFLGVS 93
           T   K K+ SKSK K        +++ + R  +               +S  L  FLG  
Sbjct: 93  TRKRKGKSESKSKRKKKKNDSPDSNSISVRKVL---------------LSAPLQKFLGSE 152

Query: 94  EVSRTNAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGKEKVGFLEIAKLLARH 151
           E+ RT  VK IW YIK H+LQNP ++REI CD+K++ IF GK K+    + KLL +H
Sbjct: 153 ELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIF-GK-KMTMFSMNKLLTKH 192

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BLAST of Tan0022515 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-08
Identity = 44/118 (37.29%), Postives = 63/118 (53.39%), Query Frame = 0


Query: 20  APS-KSSAAVPAAAGTAAAKSKTTSKSKEKAPPRSDTAASAAAPRPKVKRETTRPTG--- 79
           APS K S    A A     K  T + ++E   P   T           KR+  +      
Sbjct: 57  APSEKESLEKQAPARKTKGKRATENGTEEGKKPAKRTRKRKEDGEEGGKRKRNQDPANNP 116

Query: 80  ILKVAQVSPALSNFLGVSEVSRTNAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFE 134
           + K  ++SP L+ FLG+ ++SR   VK++W YIK H+LQ+P +KR I CDDKLK++FE
Sbjct: 117 LNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFE 174

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BLAST of Tan0022515 vs. ExPASy Swiss-Prot
Match: Q9P7S3 (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssr3 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-06
Identity = 27/69 (39.13%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 81  QVSPALSNFLGVSEVSRTNAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGKEKVGF 140
           ++S A +N LG+ E +R + V  +W YIK H LQ+   KR I CD  L+ +FE  +++ F
Sbjct: 207 KLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEA-DRLYF 266

Query: 141 LEIAKLLAR 150
             I +L+ R
Sbjct: 267 PRIPELMNR 274

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BLAST of Tan0022515 vs. ExPASy Swiss-Prot
Match: Q2TBN1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus OX=9913 GN=SMARCD1 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.6e-05
Identity = 23/67 (34.33%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 81  QVSPALSNFLGVSEVSRTNAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGKEKVGF 140
           ++ P L+  LG+   +R   ++ +W YIK H LQ+P  +  + CD  L+ IFE  +++ F
Sbjct: 296 KLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFE-SQRMKF 355

Query: 141 LEIAKLL 148
            EI + L
Sbjct: 356 SEIPQRL 361

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BLAST of Tan0022515 vs. NCBI nr
Match: XP_022974194.1 (protein TRI1-like [Cucurbita maxima] >XP_022975509.1 protein TRI1-like [Cucurbita maxima])

HSP 1 Score: 235.0 bits (598), Expect = 4.5e-58
Identity = 128/154 (83.12%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSAAVPAAAGTAAAKSKTTSKSKEKAPPRSDTAASAA 60
           MSSGFSNGIRVFRGC ALLAPSKSSAAVP     A+ KSK TSKSKEKAPP SD   SAA
Sbjct: 1   MSSGFSNGIRVFRGCTALLAPSKSSAAVP-----ASIKSKATSKSKEKAPPSSDDVVSAA 60

Query: 61  APRPKVKRETTRPTGILKVAQVSPALSNFLGVSEVSRTNAVKQIWSYIKLHNLQNPANKR 120
           AP+P +KR TTR TGILKV +VSPALSNFLGVSEVSRTNAVKQIWSYIKL+NLQNPANKR
Sbjct: 61  APKPTIKRATTRLTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKR 120

Query: 121 EIFCDDKLKAIFEGKEKVGFLEIAKLLARHFVKN 155
           EIFCDDKLKAIFEG+EKVGFLEIAK L+ HFVK+
Sbjct: 121 EIFCDDKLKAIFEGREKVGFLEIAKFLSHHFVKD 149

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BLAST of Tan0022515 vs. NCBI nr
Match: XP_022146901.1 (upstream activation factor subunit spp27-like [Momordica charantia])

HSP 1 Score: 233.8 bits (595), Expect = 9.9e-58
Identity = 132/158 (83.54%), Postives = 139/158 (87.97%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSAAVPAAAGTAAAKSKTT----SKSKEKAPPRSDTA 60
           MSSG SNGIRVFRGCRALLAPSKSSA+VPAA   AAAKSK T    S+SKEK  P SDTA
Sbjct: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAA---AAAKSKATGKPKSESKEKTAPSSDTA 60

Query: 61  ASAAAPRPKVKRETTRPTGILKVAQVSPALSNFLGVSEVSRTNAVKQIWSYIKLHNLQNP 120
           A AAAP+PK+KRE TRP GILKVAQVSPAL NFLGV E SRT+AVKQIWSYIKLHNLQNP
Sbjct: 61  A-AAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNP 120

Query: 121 ANKREIFCDDKLKAIFEGKEKVGFLEIAKLLARHFVKN 155
           ANKREI+CDDKLKAIFEG+EKVGFLEI KLLARHFVKN
Sbjct: 121 ANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 154

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BLAST of Tan0022515 vs. NCBI nr
Match: XP_022950651.1 (upstream activation factor subunit UAF30-like [Cucurbita moschata] >XP_022950661.1 upstream activation factor subunit UAF30-like [Cucurbita moschata])

HSP 1 Score: 233.0 bits (593), Expect = 1.7e-57
Identity = 127/154 (82.47%), Postives = 133/154 (86.36%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSAAVPAAAGTAAAKSKTTSKSKEKAPPRSDTAASAA 60
           MSSGFSNGIRVFRGCRALLAPSKSSAAVPAA            KSKEKAPP SD   SAA
Sbjct: 1   MSSGFSNGIRVFRGCRALLAPSKSSAAVPAAI-----------KSKEKAPPSSDDVVSAA 60

Query: 61  APRPKVKRETTRPTGILKVAQVSPALSNFLGVSEVSRTNAVKQIWSYIKLHNLQNPANKR 120
           AP+PK+KR TTR TGILKV +VSPALSNFLGVSEVSRTNAVKQIWSYIKL+NLQNPANKR
Sbjct: 61  APKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKR 120

Query: 121 EIFCDDKLKAIFEGKEKVGFLEIAKLLARHFVKN 155
           EIFCDDKLKAIFEG+EKVGFLEIAKLL  HFVK+
Sbjct: 121 EIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD 143

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BLAST of Tan0022515 vs. NCBI nr
Match: XP_022980440.1 (protein TRI1-like [Cucurbita maxima])

HSP 1 Score: 232.3 bits (591), Expect = 2.9e-57
Identity = 126/154 (81.82%), Postives = 134/154 (87.01%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSAAVPAAAGTAAAKSKTTSKSKEKAPPRSDTAASAA 60
           MSSGFSNGIRVFRGCRALLAPSKSSA VP AA  +   SK+ ++ KEK PPRSD AA AA
Sbjct: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTEPKEKTPPRSDVAA-AA 60

Query: 61  APRPKVKRETTRPTGILKVAQVSPALSNFLGVSEVSRTNAVKQIWSYIKLHNLQNPANKR 120
           AP+PKVKRE TR TG LKV QVSPAL NFLGVSE SRT+AVKQIWSYIKLHNLQNPANKR
Sbjct: 61  APKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKR 120

Query: 121 EIFCDDKLKAIFEGKEKVGFLEIAKLLARHFVKN 155
           EI+CDDKLKAIFEG+EKVGFLEI KLL RHFVKN
Sbjct: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

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BLAST of Tan0022515 vs. NCBI nr
Match: KAG7028683.1 (spp27 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229.6 bits (584), Expect = 1.9e-56
Identity = 126/154 (81.82%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSAAVPAAAGTAAAKSKTTSKSKEKAPPRSDTAASAA 60
           MSS FSNGIRVFRGCRALLAPSKSSAAVPAA            KSKEKAPP SD   SAA
Sbjct: 1   MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAI-----------KSKEKAPPSSDDGVSAA 60

Query: 61  APRPKVKRETTRPTGILKVAQVSPALSNFLGVSEVSRTNAVKQIWSYIKLHNLQNPANKR 120
           AP+PK+KR TTR TGILKV +VSPALSNFLGVSEVSRTNAVKQIWSYIKL+NLQNPANKR
Sbjct: 61  APKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKR 120

Query: 121 EIFCDDKLKAIFEGKEKVGFLEIAKLLARHFVKN 155
           EIFCDDKLKAIFEG+EKVGFLEIAKLL  HFVK+
Sbjct: 121 EIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD 143

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BLAST of Tan0022515 vs. ExPASy TrEMBL
Match: A0A6J1IKQ4 (protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111474920 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.2e-58
Identity = 128/154 (83.12%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSAAVPAAAGTAAAKSKTTSKSKEKAPPRSDTAASAA 60
           MSSGFSNGIRVFRGC ALLAPSKSSAAVP     A+ KSK TSKSKEKAPP SD   SAA
Sbjct: 1   MSSGFSNGIRVFRGCTALLAPSKSSAAVP-----ASIKSKATSKSKEKAPPSSDDVVSAA 60

Query: 61  APRPKVKRETTRPTGILKVAQVSPALSNFLGVSEVSRTNAVKQIWSYIKLHNLQNPANKR 120
           AP+P +KR TTR TGILKV +VSPALSNFLGVSEVSRTNAVKQIWSYIKL+NLQNPANKR
Sbjct: 61  APKPTIKRATTRLTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKR 120

Query: 121 EIFCDDKLKAIFEGKEKVGFLEIAKLLARHFVKN 155
           EIFCDDKLKAIFEG+EKVGFLEIAK L+ HFVK+
Sbjct: 121 EIFCDDKLKAIFEGREKVGFLEIAKFLSHHFVKD 149

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BLAST of Tan0022515 vs. ExPASy TrEMBL
Match: A0A6J1D0R8 (upstream activation factor subunit spp27-like OS=Momordica charantia OX=3673 GN=LOC111015988 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.8e-58
Identity = 132/158 (83.54%), Postives = 139/158 (87.97%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSAAVPAAAGTAAAKSKTT----SKSKEKAPPRSDTA 60
           MSSG SNGIRVFRGCRALLAPSKSSA+VPAA   AAAKSK T    S+SKEK  P SDTA
Sbjct: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAA---AAAKSKATGKPKSESKEKTAPSSDTA 60

Query: 61  ASAAAPRPKVKRETTRPTGILKVAQVSPALSNFLGVSEVSRTNAVKQIWSYIKLHNLQNP 120
           A AAAP+PK+KRE TRP GILKVAQVSPAL NFLGV E SRT+AVKQIWSYIKLHNLQNP
Sbjct: 61  A-AAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNP 120

Query: 121 ANKREIFCDDKLKAIFEGKEKVGFLEIAKLLARHFVKN 155
           ANKREI+CDDKLKAIFEG+EKVGFLEI KLLARHFVKN
Sbjct: 121 ANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 154

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BLAST of Tan0022515 vs. ExPASy TrEMBL
Match: A0A6J1GFF6 (upstream activation factor subunit UAF30-like OS=Cucurbita moschata OX=3662 GN=LOC111453685 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 8.2e-58
Identity = 127/154 (82.47%), Postives = 133/154 (86.36%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSAAVPAAAGTAAAKSKTTSKSKEKAPPRSDTAASAA 60
           MSSGFSNGIRVFRGCRALLAPSKSSAAVPAA            KSKEKAPP SD   SAA
Sbjct: 1   MSSGFSNGIRVFRGCRALLAPSKSSAAVPAAI-----------KSKEKAPPSSDDVVSAA 60

Query: 61  APRPKVKRETTRPTGILKVAQVSPALSNFLGVSEVSRTNAVKQIWSYIKLHNLQNPANKR 120
           AP+PK+KR TTR TGILKV +VSPALSNFLGVSEVSRTNAVKQIWSYIKL+NLQNPANKR
Sbjct: 61  APKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKR 120

Query: 121 EIFCDDKLKAIFEGKEKVGFLEIAKLLARHFVKN 155
           EIFCDDKLKAIFEG+EKVGFLEIAKLL  HFVK+
Sbjct: 121 EIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD 143

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BLAST of Tan0022515 vs. ExPASy TrEMBL
Match: A0A6J1IWB1 (protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111479808 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.4e-57
Identity = 126/154 (81.82%), Postives = 134/154 (87.01%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSAAVPAAAGTAAAKSKTTSKSKEKAPPRSDTAASAA 60
           MSSGFSNGIRVFRGCRALLAPSKSSA VP AA  +   SK+ ++ KEK PPRSD AA AA
Sbjct: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTEPKEKTPPRSDVAA-AA 60

Query: 61  APRPKVKRETTRPTGILKVAQVSPALSNFLGVSEVSRTNAVKQIWSYIKLHNLQNPANKR 120
           AP+PKVKRE TR TG LKV QVSPAL NFLGVSE SRT+AVKQIWSYIKLHNLQNPANKR
Sbjct: 61  APKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKR 120

Query: 121 EIFCDDKLKAIFEGKEKVGFLEIAKLLARHFVKN 155
           EI+CDDKLKAIFEG+EKVGFLEI KLL RHFVKN
Sbjct: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

[Close]

BLAST of Tan0022515 vs. ExPASy TrEMBL
Match: A0A6J1EDA2 (upstream activation factor subunit spp27-like OS=Cucurbita moschata OX=3662 GN=LOC111432134 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.5e-55
Identity = 120/154 (77.92%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSAAVPAAAGTAAAKSKTTSKSKEKAPPRSDTAASAA 60
           MSSGFSNGIRVFRGC +LLAP KSSA VP  A  +   SK+ ++ KEK PPRSD AA AA
Sbjct: 1   MSSGFSNGIRVFRGCTSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPPRSDVAA-AA 60

Query: 61  APRPKVKRETTRPTGILKVAQVSPALSNFLGVSEVSRTNAVKQIWSYIKLHNLQNPANKR 120
           AP+PK +RE TRPTG+LKV QVSPAL NFLGVSE SRT+AVKQIWSYIKLHNLQNP+NKR
Sbjct: 61  APKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKR 120

Query: 121 EIFCDDKLKAIFEGKEKVGFLEIAKLLARHFVKN 155
           EI+CDDKLKAIFEG+EKVGFLEI KLL RHFVKN
Sbjct: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

[Close]

BLAST of Tan0022515 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-32
Identity = 78/144 (54.17%), Postives = 103/144 (71.53%), Query Frame = 0


Query: 11  VFRGCRALLAP-SKSSAAVPAAAGTAAAKSKTTSKSKEKAPPRSDTAASAAAPRPKVKRE 70
           VFRG R+LLAP S++++++ +A  T    +K  +K+K K   +SD+ A          ++
Sbjct: 8   VFRGARSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPA----------KK 67

Query: 71  TTRPTGILKVAQVSPALSNFLGVSEVSRTNAVKQIWSYIKLHNLQNPANKREIFCDDKLK 130
           T R TGI KV  VSP L+ FLG  E SRT+A+K IW+YIK H+LQNPA+KREIFCD+ LK
Sbjct: 68  TPRSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLK 127

Query: 131 AIFEGKEKVGFLEIAKLLARHFVK 154
            IFEGK+KVGFLEI+KLL+ HFVK
Sbjct: 128 LIFEGKDKVGFLEISKLLSPHFVK 141

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BLAST of Tan0022515 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 118.2 bits (295), Expect = 5.7e-27
Identity = 56/81 (69.14%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 74  TGILKVAQVSPALSNFLGVSEVSRTNAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFE 133
           TGILKV  VS  L+NF+G +EVSRT AVK+IW YIKL+NLQNP NKREI CD++LK IF 
Sbjct: 28  TGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFS 87

Query: 134 GKEKVGFLEIAKLLARHFVKN 155
           GK+ VGFLEI+KLL++HF K+
Sbjct: 88  GKDTVGFLEISKLLSQHFPKS 108

[Close]

BLAST of Tan0022515 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 109.0 bits (271), Expect = 3.4e-24
Identity = 62/128 (48.44%), Postives = 84/128 (65.62%), Query Frame = 0


Query: 34  TAAAKSKTTSKSKEKAPP---------RSDTAASAAAPRPKVKRETTRPTGILKVAQVSP 93
           TA  +S   S S  +  P         R+ T+A+AA+  P    +T  P GI+K   VS 
Sbjct: 17  TAPLRSSMLSPSSLRLSPNHPTNLRMVRAVTSAAAASSDPTTTTKTREPRGIMKPRPVSQ 76

Query: 94  ALSNFLGVSEVSRTNAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGKEKVGFLEIA 153
           A+ + +GV E+ RT A+K+IW+YIK H+LQ+P NKR+I CD+KLK IFEGKE+VGFLEIA
Sbjct: 77  AMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIA 136

[Close]

BLAST of Tan0022515 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 105.1 bits (261), Expect = 5.0e-23
Identity = 48/80 (60.00%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 75  GILKVAQVSPALSNFLGVSEVSRTNAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEG 134
           GI K   VS  L++F G  E++R +A+K++W Y+KLHNLQNPANK+EI CDDKLK IF+G
Sbjct: 32  GIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDG 91

Query: 135 KEKVGFLEIAKLLARHFVKN 155
           K+KVG  EI KLL+ HF K+
Sbjct: 92  KDKVGITEIMKLLSPHFPKS 111

[Close]

BLAST of Tan0022515 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 98.2 bits (243), Expect = 6.1e-21
Identity = 57/127 (44.88%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 40  KTTSKSKEKAPPRSDTAASAAAPRPKVKRETTR--------------PTGILKVAQVSPA 99
           KTTS      P  S   AS  A + ++ R  T               P GI+K   VSP 
Sbjct: 15  KTTSFRNPSTPLSSLRFASHPAAKLRLVRAVTSATESSEPTATNKRVPRGIMKPRPVSPE 74

Query: 100 LSNFLGVSEVSRTNAVKQIWSYIKLHNLQNPANKREIFCDDKLKAIFEGKEKVGFLEIAK 153
           + + + + E++RT A+K+IW+YIK H+LQ+P NKREI CD+KLK IFEG+++VGFLEIAK
Sbjct: 75  MQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAK 134

The following BLAST results are available for this feature:

BLAST of Tan0022515 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08747	1.4e-09	37.07	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q05024	4.0e-09	37.61	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
O74503	2.0e-08	37.29	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q9P7S3	2.4e-06	39.13	SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 ...	[more]
Q2TBN1	4.6e-05	34.33	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]

BLAST of Tan0022515 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974194.1	4.5e-58	83.12	protein TRI1-like [Cucurbita maxima] >XP_022975509.1 protein TRI1-like [Cucurbit...	[more]
XP_022146901.1	9.9e-58	83.54	upstream activation factor subunit spp27-like [Momordica charantia]	[more]
XP_022950651.1	1.7e-57	82.47	upstream activation factor subunit UAF30-like [Cucurbita moschata] >XP_022950661...	[more]
XP_022980440.1	2.9e-57	81.82	protein TRI1-like [Cucurbita maxima]	[more]
KAG7028683.1	1.9e-56	81.82	spp27 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Tan0022515 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IKQ4	2.2e-58	83.12	protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111474920 PE=4 SV=1	[more]
A0A6J1D0R8	4.8e-58	83.54	upstream activation factor subunit spp27-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1GFF6	8.2e-58	82.47	upstream activation factor subunit UAF30-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1IWB1	1.4e-57	81.82	protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111479808 PE=4 SV=1	[more]
A0A6J1EDA2	8.5e-55	77.92	upstream activation factor subunit spp27-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Tan0022515 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03590.1	1.2e-32	54.17	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	5.7e-27	69.14	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	3.4e-24	48.44	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	5.0e-23	60.00	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	6.1e-21	44.88	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 76..153 e-value: 1.2E-29 score: 114.5
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 70..154 e-value: 9.6E-28 score: 98.0
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 72..153
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 81..151 e-value: 4.6E-30 score: 103.3
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 75..153 score: 22.568926
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..73
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 1..153
None	No IPR available	PANTHER	PTHR13844:SF67	PROTEIN TRI1	coord: 1..153
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 81..151 e-value: 3.64506E-35 score: 115.333

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0022515.1	Tan0022515.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus