Tan0022489 (gene) Snake gourd v1

Overview


Name	Tan0022489
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RING-type domain-containing protein
Location	LG09: 70672576 .. 70673110 (-)
RNA-Seq Expression	Tan0022489
Synteny	Tan0022489

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATCGATTTGAACGACGATTCATTCAGTCTCAACAGAATCACGAGATTCCATATTCGTTTCAACCATTTGCAATTACTGACGACGATGATCTCCACACTGTGTGGTGCGATTTTTTGTTCGCAAACGGATTGCCAGGCTACGATTACCTAAACTTCGATCTAGAAGAAGAACACTCCGATTTAGAGCCATTATCTGCATCAACCGCTGTTCTTGAGAGCCTTCTTCCGTCGGTGATTTTGACAGAACAAGATAATAATAGTAATAATGCTGCTGCTGCTGCATTTTTCTGTTCTGTTTGTATGAATGCGATTAAAGTAGGGGAAGAAGCGAAGCAATTGCCATGCCACCATTGGTATCATGGTCCCTGCATTACTCCATGGTTGGTGATTAGAAACACTTGTCCACTTTGCCGTTATCAACTATTGCCTAAACCCTAAATTGATCCATCATTCATCAAATTTATCCCTTTTTTTTCATTATATTTTGTACTAGTAATAGTGGATTCTCTCTGCGCTCAACCAAAATTAA

mRNA sequence

ATGGATGATCGATTTGAACGACGATTCATTCAGTCTCAACAGAATCACGAGATTCCATATTCGTTTCAACCATTTGCAATTACTGACGACGATGATCTCCACACTGTGTGGTGCGATTTTTTGTTCGCAAACGGATTGCCAGGCTACGATTACCTAAACTTCGATCTAGAAGAAGAACACTCCGATTTAGAGCCATTATCTGCATCAACCGCTGTTCTTGAGAGCCTTCTTCCGTCGGTGATTTTGACAGAACAAGATAATAATAGTAATAATGCTGCTGCTGCTGCATTTTTCTGTTCTGTTTGTATGAATGCGATTAAAGTAGGGGAAGAAGCGAAGCAATTGCCATGCCACCATTGGTATCATGGTCCCTGCATTACTCCATGGTTGTGGATTCTCTCTGCGCTCAACCAAAATTAA

Coding sequence (CDS)

ATGGATGATCGATTTGAACGACGATTCATTCAGTCTCAACAGAATCACGAGATTCCATATTCGTTTCAACCATTTGCAATTACTGACGACGATGATCTCCACACTGTGTGGTGCGATTTTTTGTTCGCAAACGGATTGCCAGGCTACGATTACCTAAACTTCGATCTAGAAGAAGAACACTCCGATTTAGAGCCATTATCTGCATCAACCGCTGTTCTTGAGAGCCTTCTTCCGTCGGTGATTTTGACAGAACAAGATAATAATAGTAATAATGCTGCTGCTGCTGCATTTTTCTGTTCTGTTTGTATGAATGCGATTAAAGTAGGGGAAGAAGCGAAGCAATTGCCATGCCACCATTGGTATCATGGTCCCTGCATTACTCCATGGTTGTGGATTCTCTCTGCGCTCAACCAAAATTAA

Protein sequence

MDDRFERRFIQSQQNHEIPYSFQPFAITDDDDLHTVWCDFLFANGLPGYDYLNFDLEEEHSDLEPLSASTAVLESLLPSVILTEQDNNSNNAAAAAFFCSVCMNAIKVGEEAKQLPCHHWYHGPCITPWLWILSALNQN

Homology

[Close]

BLAST of Tan0022489 vs. ExPASy Swiss-Prot
Match: Q6DIP3 (E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis OX=8364 GN=rnf126 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.7e-07
Identity = 29/89 (32.58%), Postives = 44/89 (49.44%), Query Frame = 0


Query: 42  FANGLPGYDYLNFDLEEEHSDLEPLSASTAVLESLLPSVILTEQDNNSNNAAAAAFFCSV 101
           +A G  G D +   L  +  +  P  A T  +++ LP++ +TE+         +   C V
Sbjct: 177 YAWGANGLDTIITQLLNQFENTGPPPADTEKIQA-LPTIQITEEH------VGSGLECPV 236

Query: 102 CMNAIKVGEEAKQLPCHHWYHGPCITPWL 131
           C     VGE  +QLPC+H +H  CI PWL
Sbjct: 237 CKEDYTVGESVRQLPCNHLFHNDCIIPWL 258

[Close]

BLAST of Tan0022489 vs. ExPASy Swiss-Prot
Match: Q9M2S6 (E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana OX=3702 GN=SDIR1 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.5e-07
Identity = 34/109 (31.19%), Postives = 47/109 (43.12%), Query Frame = 0


Query: 22  FQPFAITDDDDLHTVWCDFLFANGLPGYDYLNFDLEEEHSDLEPLSASTAVLESLLPSVI 81
           ++     D D++ T        N LP + Y   D E   S  +  S S++  E +L S  
Sbjct: 141 YETLRALDSDNVSTTSMSEEEINALPVHKYKVLDPENGCSLAKQASTSSSA-EKMLDSA- 200

Query: 82  LTEQDNNSNNAAAAAFFCSVCMNAIKVGEEAKQLPCHHWYHGPCITPWL 131
                N S         CSVC+  + VGE  + LPC H +H  CI PWL
Sbjct: 201 -----NESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWL 242

[Close]

BLAST of Tan0022489 vs. ExPASy Swiss-Prot
Match: Q94AK4 (E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.8e-07
Identity = 30/92 (32.61%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 39  DFLFANGLPGYDYLNFDLEEEHSDLEPLSASTAVLESLLPSVILTEQDNNSNNAAAAAFF 98
           D+ F    PG + L   L        P  A  + +++ LP++ +T++   S+++      
Sbjct: 135 DYFFG---PGLEELIEQLSSGTHHRGPPPAPKSSIDA-LPTIKITQKHLKSSDS-----H 194

Query: 99  CSVCMNAIKVGEEAKQLPCHHWYHGPCITPWL 131
           C VC +  ++  EAKQ+PCHH YH  CI PWL
Sbjct: 195 CPVCKDEFELKSEAKQMPCHHIYHSDCIVPWL 217

[Close]

BLAST of Tan0022489 vs. ExPASy Swiss-Prot
Match: Q6GPV5 (E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-06
Identity = 29/66 (43.94%), Postives = 36/66 (54.55%), Query Frame = 0


Query: 65  PLSASTAVLESLLPSVILTEQDNNSNNAAAAAFFCSVCMNAIKVGEEAKQLPCHHWYHGP 124
           P  AS  V+ES LP V +T +       A AA  C VC+   + GE  +QLPC H +H  
Sbjct: 52  PPPASKKVVES-LPKVTVTPEQ------ADAALKCPVCLLEFEEGETVRQLPCEHLFHSA 110

Query: 125 CITPWL 131
           CI PWL
Sbjct: 112 CILPWL 110

[Close]

BLAST of Tan0022489 vs. ExPASy Swiss-Prot
Match: Q6IRP0 (E3 ubiquitin-protein ligase RNF126-B OS=Xenopus laevis OX=8355 GN=rnf126-b PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 29/89 (32.58%), Postives = 43/89 (48.31%), Query Frame = 0


Query: 42  FANGLPGYDYLNFDLEEEHSDLEPLSASTAVLESLLPSVILTEQDNNSNNAAAAAFFCSV 101
           +A G  G D +   L  +  +  P  A T  +++ LP++ +TE+             C V
Sbjct: 178 YAWGANGLDTIITQLLNQFENTGPPPADTDKIQA-LPTIQITEEH------VGFGLECPV 237

Query: 102 CMNAIKVGEEAKQLPCHHWYHGPCITPWL 131
           C     VGE  +QLPC+H +H  CI PWL
Sbjct: 238 CKEDYTVGESVRQLPCNHLFHNDCIIPWL 259

[Close]

BLAST of Tan0022489 vs. NCBI nr
Match: XP_009337814.1 (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Pyrus x bretschneideri])

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-11
Identity = 51/130 (39.23%), Postives = 66/130 (50.77%), Query Frame = 0


Query: 3   DRFERRFIQSQQNHEIPYSFQPFAITDDDDLHTVWCDFLFANGLPGYDYLNFDLEEEHSD 62
           D  E   + +    EI     P+   DDD +HT   D LF              E E++ 
Sbjct: 320 DNLEWEILLNSNTWEINPDVAPY--PDDDYVHTAEYDLLFGQ----------FSENENAT 379

Query: 63  LEPLSASTAVLESLLPSVILTEQDNNSNNAAAAAFFCSVCMNAIKVGEEAKQLPCHHWYH 122
                A+ AV+ES LPSV+LT++D    NA      C+VC + +K GE+AKQLPC H YH
Sbjct: 380 AGRPPAANAVVES-LPSVVLTQEDVEKGNA-----LCAVCKDEMKSGEQAKQLPCTHRYH 431

Query: 123 GPCITPWLWI 133
           G CI PWL I
Sbjct: 440 GDCIVPWLRI 431

[Close]

BLAST of Tan0022489 vs. NCBI nr
Match: KAB2633720.1 (hypothetical protein D8674_029967 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-11
Identity = 48/104 (46.15%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 29  DDDDLHTVWCDFLFANGLPGYDYLNFDLEEEHSDLEPLSASTAVLESLLPSVILTEQDNN 88
           DDD +HT   D LF           F   E  +   P  AS AV+ES LPSV+LT++D  
Sbjct: 356 DDDYIHTAEYDLLFG---------QFSENENVTTGRP-PASNAVVES-LPSVVLTQEDVE 415

Query: 89  SNNAAAAAFFCSVCMNAIKVGEEAKQLPCHHWYHGPCITPWLWI 133
             NA      C+VC + +K GE+AKQLPC H YHG CI PWL I
Sbjct: 416 RGNA-----LCAVCKDEMKSGEQAKQLPCTHRYHGDCIVPWLRI 443

[Close]

BLAST of Tan0022489 vs. NCBI nr
Match: XP_008393264.2 (uncharacterized protein LOC103455455 [Malus domestica])

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-11
Identity = 51/130 (39.23%), Postives = 66/130 (50.77%), Query Frame = 0


Query: 3   DRFERRFIQSQQNHEIPYSFQPFAITDDDDLHTVWCDFLFANGLPGYDYLNFDLEEEHSD 62
           D  E   + +    EI     P+   DDD +HT   D LF              E E++ 
Sbjct: 325 DSLEWEILLNANTWEINPDVAPY--PDDDYIHTAEYDLLFGQ----------FSENENAT 384

Query: 63  LEPLSASTAVLESLLPSVILTEQDNNSNNAAAAAFFCSVCMNAIKVGEEAKQLPCHHWYH 122
                A+ AV+ES LPSV+LT++D    NA      C+VC + +K GE+AKQLPC H YH
Sbjct: 385 AGRPPAANAVVES-LPSVVLTQEDVEKGNA-----LCAVCKDEMKSGEQAKQLPCTHRYH 436

Query: 123 GPCITPWLWI 133
           G CI PWL I
Sbjct: 445 GDCIVPWLRI 436

[Close]

BLAST of Tan0022489 vs. NCBI nr
Match: TQD85614.1 (hypothetical protein C1H46_028788 [Malus baccata])

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-11
Identity = 51/130 (39.23%), Postives = 66/130 (50.77%), Query Frame = 0


Query: 3   DRFERRFIQSQQNHEIPYSFQPFAITDDDDLHTVWCDFLFANGLPGYDYLNFDLEEEHSD 62
           D  E   + +    EI     P+   DDD +HT   D LF              E E++ 
Sbjct: 325 DSLEWEILLNANTWEINPDVAPY--PDDDYIHTAEYDLLFGQ----------FSENENAT 384

Query: 63  LEPLSASTAVLESLLPSVILTEQDNNSNNAAAAAFFCSVCMNAIKVGEEAKQLPCHHWYH 122
                A+ AV+ES LPSV+LT++D    NA      C+VC + +K GE+AKQLPC H YH
Sbjct: 385 AGRPPAANAVVES-LPSVVLTQEDVEKGNA-----LCAVCKDEMKSGEQAKQLPCTHRYH 436

Query: 123 GPCITPWLWI 133
           G CI PWL I
Sbjct: 445 GDCIVPWLRI 436

[Close]

BLAST of Tan0022489 vs. NCBI nr
Match: KAG6735355.1 (hypothetical protein POTOM_062076 [Populus tomentosa])

HSP 1 Score: 79.0 bits (193), Expect = 3.7e-11
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = 0


Query: 3   DRFERRFIQSQQNHEIPYSFQPFAITDDDDLHTVWCDFLFANGLPGYDYLNFDLEEEHSD 62
           D  E + + +  N +  ++ +P++ + DD ++T   + LF              E E++ 
Sbjct: 322 DHLEWQVLLNANNLDHDHNSEPYSGSHDDYIYTAESEMLFGQ----------FTENENAM 381

Query: 63  LEPLSASTAVLESLLPSVILTEQDNNSNNAAAAAFFCSVCMNAIKVGEEAKQLPCHHWYH 122
           +    A+ +V+E  LPSV+ T++D  SNNA      C+VC + I VGE  KQLPC H YH
Sbjct: 382 MGQPPATKSVVEK-LPSVVFTKEDVESNNA-----LCAVCKDDINVGERVKQLPCLHRYH 435

Query: 123 GPCITPWLWI 133
           G CI PWL I
Sbjct: 442 GECIVPWLGI 435

[Close]

BLAST of Tan0022489 vs. ExPASy TrEMBL
Match: A0A5C7H3K6 (RING-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_024098 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.8e-11
Identity = 47/110 (42.73%), Postives = 60/110 (54.55%), Query Frame = 0


Query: 23  QPFAITDDDDLHTVWCDFLFANGLPGYDYLNFDLEEEHSDLEPLSASTAVLESLLPSVIL 82
           +PF    DD  HT   D LF              E E++ +    AS +V+E+ LP V L
Sbjct: 345 EPFFGEHDDFFHTAEYDMLFGQ----------FTENENAWMGRPPASKSVVEN-LPVVAL 404

Query: 83  TEQDNNSNNAAAAAFFCSVCMNAIKVGEEAKQLPCHHWYHGPCITPWLWI 133
           T++D  SNNA      C+VC + I +GE+AKQLPC H YHG CI PWL I
Sbjct: 405 TQEDVESNNA-----LCAVCKDEISIGEKAKQLPCAHRYHGDCIVPWLGI 438

[Close]

BLAST of Tan0022489 vs. ExPASy TrEMBL
Match: A0A2K1XI43 (RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G047900 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.8e-11
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = 0


Query: 3   DRFERRFIQSQQNHEIPYSFQPFAITDDDDLHTVWCDFLFANGLPGYDYLNFDLEEEHSD 62
           D  E + + +  N +  ++ +P++ + DD ++T   + LF              E E++ 
Sbjct: 216 DHLEWQVLLNANNLDHDHNSEPYSGSHDDYIYTAESEMLFGQ----------FTENENAM 275

Query: 63  LEPLSASTAVLESLLPSVILTEQDNNSNNAAAAAFFCSVCMNAIKVGEEAKQLPCHHWYH 122
           +    A+ +V+E  LPSV+ T++D  SNNA      C+VC + I VGE  KQLPC H YH
Sbjct: 276 MGQPPATKSVVEK-LPSVVFTKEDVESNNA-----LCAVCKDDINVGERVKQLPCLHRYH 329

Query: 123 GPCITPWLWI 133
           G CI PWL I
Sbjct: 336 GECIVPWLGI 329

[Close]

BLAST of Tan0022489 vs. ExPASy TrEMBL
Match: A0A498JSG0 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_008986 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 46/104 (44.23%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 29  DDDDLHTVWCDFLFANGLPGYDYLNFDLEEEHSDLEPLSASTAVLESLLPSVILTEQDNN 88
           DDD +HT   D LF              E E++      A+ AV+ES LPSV+LT++D  
Sbjct: 356 DDDYIHTAEYDMLFGQ----------FSENENATTGRPPAANAVVES-LPSVVLTQEDVE 415

Query: 89  SNNAAAAAFFCSVCMNAIKVGEEAKQLPCHHWYHGPCITPWLWI 133
             NA      C+VC + +K GE+AKQLPC H YHG CI PWL I
Sbjct: 416 KGNAV-----CAVCKDEMKSGEQAKQLPCTHRYHGDCIVPWLRI 443

[Close]

BLAST of Tan0022489 vs. ExPASy TrEMBL
Match: A0A7J0GN03 (RING/U-box superfamily protein OS=Actinidia rufa OX=165716 GN=Acr_23g0005680 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 46/88 (52.27%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 45  GLPGYDYLNFDLEEEHSDLEPLSASTAVLESLLPSVILTEQDNNSNNAAAAAFFCSVCMN 104
           G  G  YL  D +E +   EP  AS  VLE+ LPSVILT++D  ++NA      C+VC +
Sbjct: 318 GHDGEGYLG-DYDEYNYTAEP-PASKTVLEN-LPSVILTQEDVENDNA-----LCAVCKD 377

Query: 105 AIKVGEEAKQLPCHHWYHGPCITPWLWI 133
            I VGE+AKQLPC H YHG CI PWL I
Sbjct: 378 GIIVGEQAKQLPCSHRYHGDCIVPWLGI 397

[Close]

BLAST of Tan0022489 vs. ExPASy TrEMBL
Match: B9RLH2 (Zinc finger protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1466950 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.0e-11
Identity = 46/110 (41.82%), Postives = 62/110 (56.36%), Query Frame = 0


Query: 23  QPFAITDDDDLHTVWCDFLFANGLPGYDYLNFDLEEEHSDLEPLSASTAVLESLLPSVIL 82
           +P+    DD ++T   + LF              E E+S +    A+ +V+E  LPSV+L
Sbjct: 352 EPYFGDHDDYIYTAEYEMLFGQ----------FAENENSLIVRPPAAKSVVEK-LPSVVL 411

Query: 83  TEQDNNSNNAAAAAFFCSVCMNAIKVGEEAKQLPCHHWYHGPCITPWLWI 133
           T++D  SNNA      C+VC + I VGE+AKQLPC H YHG CI PWL I
Sbjct: 412 TKEDVESNNA-----LCAVCKDEINVGEKAKQLPCTHRYHGDCILPWLGI 445

[Close]

BLAST of Tan0022489 vs. TAIR 10
Match: AT2G44330.1 (RING/U-box superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-08
Identity = 26/77 (33.77%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 54  FDLEEEHSDLEPLSASTAVLESLLPSVILTEQDNNSNNAAAAAFFCSVCMNAIKVGEEAK 113
           F+ +EE   L+P+ +        LP++ ++    +S ++  +A  C++C     VGE A+
Sbjct: 59  FEDDEESQFLDPMES--------LPTIKISSSMLSSASSDDSALPCAICREDFVVGESAR 118

Query: 114 QLPCHHWYHGPCITPWL 131
           +LPC+H YH  CI PWL
Sbjct: 119 RLPCNHLYHNDCIIPWL 127

[Close]

BLAST of Tan0022489 vs. TAIR 10
Match: AT3G55530.1 (RING/U-box superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-08
Identity = 34/109 (31.19%), Postives = 47/109 (43.12%), Query Frame = 0


Query: 22  FQPFAITDDDDLHTVWCDFLFANGLPGYDYLNFDLEEEHSDLEPLSASTAVLESLLPSVI 81
           ++     D D++ T        N LP + Y   D E   S  +  S S++  E +L S  
Sbjct: 141 YETLRALDSDNVSTTSMSEEEINALPVHKYKVLDPENGCSLAKQASTSSSA-EKMLDSA- 200

Query: 82  LTEQDNNSNNAAAAAFFCSVCMNAIKVGEEAKQLPCHHWYHGPCITPWL 131
                N S         CSVC+  + VGE  + LPC H +H  CI PWL
Sbjct: 201 -----NESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWL 242

[Close]

BLAST of Tan0022489 vs. TAIR 10
Match: AT3G56580.2 (RING/U-box superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-08
Identity = 30/92 (32.61%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 39  DFLFANGLPGYDYLNFDLEEEHSDLEPLSASTAVLESLLPSVILTEQDNNSNNAAAAAFF 98
           D+ F    PG + L   L        P  A  + +++ LP++ +T++   S+++      
Sbjct: 135 DYFFG---PGLEELIEQLSSGTHHRGPPPAPKSSIDA-LPTIKITQKHLKSSDS-----H 194

Query: 99  CSVCMNAIKVGEEAKQLPCHHWYHGPCITPWL 131
           C VC +  ++  EAKQ+PCHH YH  CI PWL
Sbjct: 195 CPVCKDEFELKSEAKQMPCHHIYHSDCIVPWL 217

[Close]

BLAST of Tan0022489 vs. TAIR 10
Match: AT3G56580.1 (RING/U-box superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-08
Identity = 30/92 (32.61%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 39  DFLFANGLPGYDYLNFDLEEEHSDLEPLSASTAVLESLLPSVILTEQDNNSNNAAAAAFF 98
           D+ F    PG + L   L        P  A  + +++ LP++ +T++   S+++      
Sbjct: 135 DYFFG---PGLEELIEQLSSGTHHRGPPPAPKSSIDA-LPTIKITQKHLKSSDS-----H 194

Query: 99  CSVCMNAIKVGEEAKQLPCHHWYHGPCITPWL 131
           C VC +  ++  EAKQ+PCHH YH  CI PWL
Sbjct: 195 CPVCKDEFELKSEAKQMPCHHIYHSDCIVPWL 217

[Close]

BLAST of Tan0022489 vs. TAIR 10
Match: AT3G56580.3 (RING/U-box superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-08
Identity = 30/92 (32.61%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 39  DFLFANGLPGYDYLNFDLEEEHSDLEPLSASTAVLESLLPSVILTEQDNNSNNAAAAAFF 98
           D+ F    PG + L   L        P  A  + +++ LP++ +T++   S+++      
Sbjct: 135 DYFFG---PGLEELIEQLSSGTHHRGPPPAPKSSIDA-LPTIKITQKHLKSSDS-----H 194

Query: 99  CSVCMNAIKVGEEAKQLPCHHWYHGPCITPWL 131
           C VC +  ++  EAKQ+PCHH YH  CI PWL
Sbjct: 195 CPVCKDEFELKSEAKQMPCHHIYHSDCIVPWL 217

The following BLAST results are available for this feature:

BLAST of Tan0022489 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DIP3	5.7e-07	32.58	E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis OX=8364 GN=rnf126 PE=2 ...	[more]
Q9M2S6	7.5e-07	31.19	E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana OX=3702 GN=SDIR1 PE=1 ...	[more]
Q94AK4	9.8e-07	32.61	E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV...	[more]
Q6GPV5	1.3e-06	43.94	E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1	[more]
Q6IRP0	1.7e-06	32.58	E3 ubiquitin-protein ligase RNF126-B OS=Xenopus laevis OX=8355 GN=rnf126-b PE=2 ...	[more]

BLAST of Tan0022489 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_009337814.1	2.2e-11	39.23	PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Pyrus x bretschneideri]	[more]
KAB2633720.1	2.8e-11	46.15	hypothetical protein D8674_029967 [Pyrus ussuriensis x Pyrus communis]	[more]
XP_008393264.2	2.8e-11	39.23	uncharacterized protein LOC103455455 [Malus domestica]	[more]
TQD85614.1	2.8e-11	39.23	hypothetical protein C1H46_028788 [Malus baccata]	[more]
KAG6735355.1	3.7e-11	35.38	hypothetical protein POTOM_062076 [Populus tomentosa]	[more]

BLAST of Tan0022489 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7H3K6	1.8e-11	42.73	RING-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_02409...	[more]
A0A2K1XI43	1.8e-11	35.38	RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G...	[more]
A0A498JSG0	2.3e-11	44.23	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_008986 PE=4 SV=1	[more]
A0A7J0GN03	2.3e-11	52.27	RING/U-box superfamily protein OS=Actinidia rufa OX=165716 GN=Acr_23g0005680 PE=...	[more]
B9RLH2	4.0e-11	41.82	Zinc finger protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1466950 PE=4 S...	[more]

BLAST of Tan0022489 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44330.1	1.8e-08	33.77	RING/U-box superfamily protein	[more]
AT3G55530.1	5.3e-08	31.19	RING/U-box superfamily protein	[more]
AT3G56580.2	7.0e-08	32.61	RING/U-box superfamily protein	[more]
AT3G56580.1	7.0e-08	32.61	RING/U-box superfamily protein	[more]
AT3G56580.3	7.0e-08	32.61	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 54..137 e-value: 3.3E-11 score: 44.7
IPR001841	Zinc finger, RING-type	PFAM	PF17123	zf-RING_11	coord: 99..126 e-value: 2.8E-9 score: 36.5
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 36..130
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 98..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0022489.1	Tan0022489.1	mRNA