Tan0022373 (gene) Snake gourd v1

Overview
NameTan0022373
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionglycine-rich cell wall structural protein 1-like
LocationLG07: 66803066 .. 66804173 (-)
RNA-Seq ExpressionTan0022373
SyntenyTan0022373
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCTCTGCAATGCAGCAAACCAGGTGAGCAGAGCCAGCAGCAACAGAAGCACGTCCAACACCAACAAGACCATTGCTTCAGCCATGTCACCGACAAGATCAAAGGCGTGTTTGGCCACCATCATGGACAGCCTCCGGTGGCGGCGCACGGACACGAACACGGACACGGCCACTCGGGCAATGCCAATGCAGGTCATTGCAAGCCTGCAGCAGGGTTGAAGAAGAAGGAACATGGTCACAAAAACAAAGAAGGAGGTTTGTTGCACAAGATCAAGGATGCCTTTTCTGACCACAGCAGCGATAGCAGCGACAGTGACAGTGACAAAGAGTGTCACAAAGCCCACCACAAAAAGAAGGCAAGTTTTCTATCTCTCCCTCTCAAGATCATTAGTGCAAACATTTAGTTTTTAGAGGGTTCTTACAACAAATGGTTCGATGTTCTCATTTTGATTTTGATTTGAGAATTAACTATAGTTTTTCAAATTTGTTAAACATATTGATATAATTAAATTTAGCGGTCTGATTGGTGATTTAAGATGGTATCAGAGCAGGTGATCCAGAGAGGTCCTTCGTTCGAACCTCTCTGTAAAATCGTTTGCTCCTCAATTAATATTGATGTCCATTTCAAGTTTTTGATGTCGGGTTGAAATAGAATTTACCAAGTGTATTTATTGGATTGTTTACTCACAAACCGTGAACATCAAGATGGGATTTTTTTTTTTTCTTTTTTTCTTTAGAATAACTAAAGGGGTGCAATAATATAAGAATTTTCAAAATGGATACTCTTGTATAGGTACGCTCAACTACAGAGTTTTGATACGATCTAGTACATTAGATCGTTAGTATGATTGCACCCAAGTTAGCGATCTTTTTGTTAAAGATAATTTTAAGGGTAGTGGTCTAAGCTAGTGGTCAGAAGCTAATTATTTATTTGCCTATAAATACTCTTGTAATGTTTTCATTTTAATAAATAGGAAGATTTATCATTTCAAACGATTTGTATTTGTATTTTGATTTTGTATTTTCTCTTTGTTTTTGTTACATGTATGATGTATGACCTAATTCTTTTGATTGTATTTGCAGAACTTAAAGGGGAAGAAATGT

mRNA sequence

ATGTCGTCTCTGCAATGCAGCAAACCAGGTGAGCAGAGCCAGCAGCAACAGAAGCACGTCCAACACCAACAAGACCATTGCTTCAGCCATGTCACCGACAAGATCAAAGGCGTGTTTGGCCACCATCATGGACAGCCTCCGGTGGCGGCGCACGGACACGAACACGGACACGGCCACTCGGGCAATGCCAATGCAGGTCATTGCAAGCCTGCAGCAGGGTTGAAGAAGAAGGAACATGGTCACAAAAACAAAGAAGGAGGTTTGTTGCACAAGATCAAGGATGCCTTTTCTGACCACAGCAGCGATAGCAGCGACAGTGACAGTGACAAAGAGTGTCACAAAGCCCACCACAAAAAGAAGGCAAGTTTTCTATCTCTCCCTCTCAAGATCATTAGTGCAAACATTTAGTTTTTAGAGGGTTCTTACAACAAATGGTTCGATGTTCTCATTTTGATTTTGATTTGAGAATTAACTATAGTTTTTCAAATTTGTTAAACATATTGATATAATTAAATTTAGCGGTCTGATTGGTGATTTAAGATGGTATCAGAGCAGGTGATCCAGAGAGGTCCTTCGTTCGAACCTCTCTGTAAAATCGTTTGCTCCTCAATTAATATTGATGTCCATTTCAAGTTTTTGATGTCGGGTTGAAATAGAATTTACCAAGTGTATTTATTGGATTGTTTACTCACAAACCGTGAACATCAAGATGGGATTTTTTTTTTTTCTTTTTTTCTTTAGAATAACTAAAGGGGTGCAATAATATAAGAATTTTCAAAATGGATACTCTTGTATAGGTACGCTCAACTACAGAGTTTTGATACGATCTAGTACATTAGATCGTTAGTATGATTGCACCCAAGTTAGCGATCTTTTTGTTAAAGATAATTTTAAGGGTAGTGGTCTAAGCTAGTGGTCAGAAGCTAATTATTTATTTGCCTATAAATACTCTTGTAATGTTTTCATTTTAATAAATAGGAAGATTTATCATTTCAAACGATTTGTATTTGTATTTTGATTTTGTATTTTCTCTTTGTTTTTGTTACATGTATGATGTATGACCTAATTCTTTTGATTGTATTTGCAGAACTTAAAGGGGAAGAAATGT

Coding sequence (CDS)

ATGTCGTCTCTGCAATGCAGCAAACCAGGTGAGCAGAGCCAGCAGCAACAGAAGCACGTCCAACACCAACAAGACCATTGCTTCAGCCATGTCACCGACAAGATCAAAGGCGTGTTTGGCCACCATCATGGACAGCCTCCGGTGGCGGCGCACGGACACGAACACGGACACGGCCACTCGGGCAATGCCAATGCAGGTCATTGCAAGCCTGCAGCAGGGTTGAAGAAGAAGGAACATGGTCACAAAAACAAAGAAGGAGGTTTGTTGCACAAGATCAAGGATGCCTTTTCTGACCACAGCAGCGATAGCAGCGACAGTGACAGTGACAAAGAGTGTCACAAAGCCCACCACAAAAAGAAGGCAAGTTTTCTATCTCTCCCTCTCAAGATCATTAGTGCAAACATTTAG

Protein sequence

MSSLQCSKPGEQSQQQQKHVQHQQDHCFSHVTDKIKGVFGHHHGQPPVAAHGHEHGHGHSGNANAGHCKPAAGLKKKEHGHKNKEGGLLHKIKDAFSDHSSDSSDSDSDKECHKAHHKKKASFLSLPLKIISANI
Homology
BLAST of Tan0022373 vs. NCBI nr
Match: XP_038875375.1 (uncharacterized protein LOC120067846 [Benincasa hispida])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-25
Identity = 79/122 (64.75%), Postives = 88/122 (72.13%), Query Frame = 0

Query: 1   MSSLQCSKPGEQSQQQQKHVQHQQDHCF-SHVTDKIKGVF-GHHHGQPPVAAHGHEHGHG 60
           M+SLQC+KP +    QQKH Q Q  HCF  HV+DKIKGVF GHHHGQ P+A+    H   
Sbjct: 1   MASLQCNKPAD--HDQQKHDQ-QHHHCFGGHVSDKIKGVFKGHHHGQAPLASAPVHH--- 60

Query: 61  HSGNANAGHCKPAAGLKKKEHGHKNKEGGLLHKIKDAFSDHSSDSSDSDSDKECHKAHHK 120
              +ANA HCKP    KKKEH HKNKEGGLLHKIKDAFSDHSSDSSDS++  EC K HH 
Sbjct: 61  ---SANASHCKPTGSKKKKEH-HKNKEGGLLHKIKDAFSDHSSDSSDSEN--ECDKPHHN 110

BLAST of Tan0022373 vs. NCBI nr
Match: XP_008437383.1 (PREDICTED: uncharacterized protein LOC103482815 [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 4.2e-20
Identity = 71/125 (56.80%), Postives = 82/125 (65.60%), Query Frame = 0

Query: 1   MSSLQCSKPGEQS--QQQQKHVQHQQDHCF-SHVTDKIKGVF--GHHHGQPPVAAHGHEH 60
           M+  QC+KP + +  Q QQKH Q    HCF  HV+DKIKGVF  GHHH Q   A+    H
Sbjct: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61  GHGHSGNANAGHCKPAAGLKKKEHGHKNKEGGLLHKIKDAFSDHSSDSSDSDSDKECHKA 120
                 +AN  HCK +   KKKEH  K KEGGLLHKIK+AFSDHSSDSSDS++  ECHK 
Sbjct: 61  ------SANDSHCKGSGSKKKKEHQVK-KEGGLLHKIKEAFSDHSSDSSDSEN--ECHKP 116

BLAST of Tan0022373 vs. NCBI nr
Match: XP_022146004.1 (uncharacterized protein LOC111015315 [Momordica charantia])

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-19
Identity = 70/122 (57.38%), Postives = 81/122 (66.39%), Query Frame = 0

Query: 1   MSSLQCSKPGEQSQQQQKHVQHQQDHCFSHVTDKIKGVF-GH-HHGQPPVAAHGHEHGHG 60
           M+SLQCSKP +Q   Q +  +H Q HCF HV+DKIKGVF GH HHGQ P AA  H     
Sbjct: 1   MASLQCSKPADQQHSQNQ--KHDQGHCFGHVSDKIKGVFKGHGHHGQAPGAAPHHSTNVN 60

Query: 61  HSGNANAGHCKPAAGLKKKEHGHKNKEGGLLHKIKDAFSDHSSDSSDSDSDKECHKAHHK 120
            + NA+  H        K++  HKNK+G LLHKIKDAFSDHSSDSSDSD+  E HKAH K
Sbjct: 61  ANANASVSH--------KEKEQHKNKDGNLLHKIKDAFSDHSSDSSDSDN--EGHKAHRK 110

BLAST of Tan0022373 vs. NCBI nr
Match: XP_022958513.1 (glycine-rich cell wall structural protein 1-like [Cucurbita moschata])

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-07
Identity = 45/98 (45.92%), Postives = 52/98 (53.06%), Query Frame = 0

Query: 40  GHHHGQPPVAAHGHEHGHGH------------SGNANAGHCKPA--------AGLKKKEH 99
           GH HGQ     HG   GHGH              N N GHC+PA        AG  +K+ 
Sbjct: 434 GHDHGQAGGHGHGPAGGHGHCMPANPNIGHCQPANPNVGHCQPASPNVGHCKAGGSRKKG 493

Query: 100 GHKNKEGGLLHKIKDAFSDHSSDSSDSDSDKECHKAHH 118
            HKNKEGG L+KIKDAFSDH   S +SDSD +C +  H
Sbjct: 494 HHKNKEGGFLNKIKDAFSDH---SDNSDSDDDCRRGRH 528

BLAST of Tan0022373 vs. NCBI nr
Match: KAA0042689.1 (uncharacterized protein E6C27_scaffold44G001870 [Cucumis melo var. makuwa] >TYK06092.1 uncharacterized protein E5676_scaffold376G001930 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-05
Identity = 44/91 (48.35%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 1  MSSLQCSKPGEQS--QQQQKHVQHQQDHCF-SHVTDKIKGVF--GHHHGQPPVAAHGHEH 60
          M+  QC+KP + +  Q QQKH Q    HCF  HV+DKIKGVF  GHHH Q   A+    H
Sbjct: 1  MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61 GHGHSGNANAGHCKPAAGLKKKEHGHKNKEG 87
                +AN  HCK +   KKKEH  K KEG
Sbjct: 61 ------SANDSHCKGSGSKKKKEHQVK-KEG 84

BLAST of Tan0022373 vs. ExPASy TrEMBL
Match: A0A1S3AUH3 (uncharacterized protein LOC103482815 OS=Cucumis melo OX=3656 GN=LOC103482815 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.0e-20
Identity = 71/125 (56.80%), Postives = 82/125 (65.60%), Query Frame = 0

Query: 1   MSSLQCSKPGEQS--QQQQKHVQHQQDHCF-SHVTDKIKGVF--GHHHGQPPVAAHGHEH 60
           M+  QC+KP + +  Q QQKH Q    HCF  HV+DKIKGVF  GHHH Q   A+    H
Sbjct: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61  GHGHSGNANAGHCKPAAGLKKKEHGHKNKEGGLLHKIKDAFSDHSSDSSDSDSDKECHKA 120
                 +AN  HCK +   KKKEH  K KEGGLLHKIK+AFSDHSSDSSDS++  ECHK 
Sbjct: 61  ------SANDSHCKGSGSKKKKEHQVK-KEGGLLHKIKEAFSDHSSDSSDSEN--ECHKP 116

BLAST of Tan0022373 vs. ExPASy TrEMBL
Match: A0A6J1CWW2 (uncharacterized protein LOC111015315 OS=Momordica charantia OX=3673 GN=LOC111015315 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 6.0e-20
Identity = 70/122 (57.38%), Postives = 81/122 (66.39%), Query Frame = 0

Query: 1   MSSLQCSKPGEQSQQQQKHVQHQQDHCFSHVTDKIKGVF-GH-HHGQPPVAAHGHEHGHG 60
           M+SLQCSKP +Q   Q +  +H Q HCF HV+DKIKGVF GH HHGQ P AA  H     
Sbjct: 1   MASLQCSKPADQQHSQNQ--KHDQGHCFGHVSDKIKGVFKGHGHHGQAPGAAPHHSTNVN 60

Query: 61  HSGNANAGHCKPAAGLKKKEHGHKNKEGGLLHKIKDAFSDHSSDSSDSDSDKECHKAHHK 120
            + NA+  H        K++  HKNK+G LLHKIKDAFSDHSSDSSDSD+  E HKAH K
Sbjct: 61  ANANASVSH--------KEKEQHKNKDGNLLHKIKDAFSDHSSDSSDSDN--EGHKAHRK 110

BLAST of Tan0022373 vs. ExPASy TrEMBL
Match: A0A6J1H399 (glycine-rich cell wall structural protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111459722 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.9e-08
Identity = 45/98 (45.92%), Postives = 52/98 (53.06%), Query Frame = 0

Query: 40  GHHHGQPPVAAHGHEHGHGH------------SGNANAGHCKPA--------AGLKKKEH 99
           GH HGQ     HG   GHGH              N N GHC+PA        AG  +K+ 
Sbjct: 434 GHDHGQAGGHGHGPAGGHGHCMPANPNIGHCQPANPNVGHCQPASPNVGHCKAGGSRKKG 493

Query: 100 GHKNKEGGLLHKIKDAFSDHSSDSSDSDSDKECHKAHH 118
            HKNKEGG L+KIKDAFSDH   S +SDSD +C +  H
Sbjct: 494 HHKNKEGGFLNKIKDAFSDH---SDNSDSDDDCRRGRH 528

BLAST of Tan0022373 vs. ExPASy TrEMBL
Match: A0A5A7TMV4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001930 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 44/91 (48.35%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 1  MSSLQCSKPGEQS--QQQQKHVQHQQDHCF-SHVTDKIKGVF--GHHHGQPPVAAHGHEH 60
          M+  QC+KP + +  Q QQKH Q    HCF  HV+DKIKGVF  GHHH Q   A+    H
Sbjct: 1  MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61 GHGHSGNANAGHCKPAAGLKKKEHGHKNKEG 87
                +AN  HCK +   KKKEH  K KEG
Sbjct: 61 ------SANDSHCKGSGSKKKKEHQVK-KEG 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038875375.11.1e-2564.75uncharacterized protein LOC120067846 [Benincasa hispida][more]
XP_008437383.14.2e-2056.80PREDICTED: uncharacterized protein LOC103482815 [Cucumis melo][more]
XP_022146004.11.2e-1957.38uncharacterized protein LOC111015315 [Momordica charantia][more]
XP_022958513.11.8e-0745.92glycine-rich cell wall structural protein 1-like [Cucurbita moschata][more]
KAA0042689.12.3e-0548.35uncharacterized protein E6C27_scaffold44G001870 [Cucumis melo var. makuwa] >TYK0... [more]
Match NameE-valueIdentityDescription
A0A1S3AUH32.0e-2056.80uncharacterized protein LOC103482815 OS=Cucumis melo OX=3656 GN=LOC103482815 PE=... [more]
A0A6J1CWW26.0e-2057.38uncharacterized protein LOC111015315 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A6J1H3998.9e-0845.92glycine-rich cell wall structural protein 1-like OS=Cucurbita moschata OX=3662 G... [more]
A0A5A7TMV41.1e-0548.35Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..40

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0022373.1Tan0022373.1mRNA