Tan0022251 (gene) Snake gourd v1

Overview


Name	Tan0022251
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein RALF-like 10
Location	LG09: 41411097 .. 41411312 (+)
RNA-Seq Expression	Tan0022251
Synteny	Tan0022251

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAATCATGGCTTATTTCTTTAGTTCTTATTAGCATGTTGGTGACAGGACAAGACGTAGCAGCGGACATAACTTATCTTAAACTAGTGGATTGCAACGAACCAAACCCACCACCAAGTTGTTCTTCACCGAATGGAGAAGGTTCTACACCTGTTTCTGCTAATGCCTATACTCGAGGTTGCTCTGCCATCAATCGTTGTCGTGGAGGATGA

mRNA sequence

ATGAAGCAATCATGGCTTATTTCTTTAGTTCTTATTAGCATGTTGGTGACAGGACAAGACGTAGCAGCGGACATAACTTATCTTAAACTAGTGGATTGCAACGAACCAAACCCACCACCAAGTTGTTCTTCACCGAATGGAGAAGGTTCTACACCTGTTTCTGCTAATGCCTATACTCGAGGTTGCTCTGCCATCAATCGTTGTCGTGGAGGATGA

Coding sequence (CDS)

ATGAAGCAATCATGGCTTATTTCTTTAGTTCTTATTAGCATGTTGGTGACAGGACAAGACGTAGCAGCGGACATAACTTATCTTAAACTAGTGGATTGCAACGAACCAAACCCACCACCAAGTTGTTCTTCACCGAATGGAGAAGGTTCTACACCTGTTTCTGCTAATGCCTATACTCGAGGTTGCTCTGCCATCAATCGTTGTCGTGGAGGATGA

Protein sequence

MKQSWLISLVLISMLVTGQDVAADITYLKLVDCNEPNPPPSCSSPNGEGSTPVSANAYTRGCSAINRCRGG

Homology

[Close]

BLAST of Tan0022251 vs. ExPASy Swiss-Prot
Match: O64466 (Protein RALF-like 11 OS=Arabidopsis thaliana OX=3702 GN=RALFL11 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-07
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 3  QSWLISLVLISMLVTGQDVAAD--ITYLKLVDCNEPNPPPSCSSPNGEGSTPVSANAYTR 62
          ++WLI L++I   V  + V +   I Y  +  C  PNPPP C+ P  E   P   N Y+R
Sbjct: 2  KAWLICLLVICAAVIAEPVESRNYIEYGAINKCAGPNPPPGCNPPGAEQKNPTPVNEYSR 61

Query: 63 GCSAINRCR 70
          GCS I+RCR
Sbjct: 62 GCSKIHRCR 70

[Close]

BLAST of Tan0022251 vs. ExPASy Swiss-Prot
Match: F4ISE1 (Protein RALF-like 12 OS=Arabidopsis thaliana OX=3702 GN=RALFL12 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.9e-07
Identity = 28/69 (40.58%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 3  QSWLISLVLISMLVTGQDVAAD--ITYLKLVDCNEPNPPPSCSSPNGEGSTPVSANAYTR 62
          ++W+I L++I  +V  + V +   I Y  +  C  PNPPP C+ P  E   P   N Y+R
Sbjct: 2  KAWVIGLLVICAVVIAEPVESRNYIEYGAINKCAGPNPPPGCNPPGTEQKNPTPVNEYSR 61

Query: 63 GCSAINRCR 70
          GCS I+RCR
Sbjct: 62 GCSKIHRCR 70

[Close]

BLAST of Tan0022251 vs. ExPASy Swiss-Prot
Match: F4ISE2 (Protein RALF-like 13 OS=Arabidopsis thaliana OX=3702 GN=RALFL13 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.5e-07
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 3  QSWLISLVLISMLVTGQDVAAD--ITYLKLVDCNEPNPPPSCSSPNGEGSTPVSANAYTR 62
          ++W+I L++I   V  + V +   I Y  +  C  PNPPP C+ P  E   P   N Y+R
Sbjct: 2  KAWVICLLVICAAVIAEPVESRNYIEYGAINKCAGPNPPPGCNPPGAEQKNPNPVNEYSR 61

Query: 63 GCSAINRCR 70
          GCS I+RCR
Sbjct: 62 GCSKIHRCR 70

[Close]

BLAST of Tan0022251 vs. ExPASy Swiss-Prot
Match: Q9LSG0 (Protein RALF-like 25 OS=Arabidopsis thaliana OX=3702 GN=RALFL25 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 9.4e-06
Identity = 32/71 (45.07%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 1  MKQSWLISLVLISMLVTGQDVAAD--ITYLKLVDCNEPNPPPSCSSPNGEGSTPVSANAY 60
          MK   +I LV+ S+L+ G+  A D    YL L  C  PN PP C     +  TPV  N Y
Sbjct: 1  MKTFMIILLVICSILIVGRVEANDNKRKYLLLDPCLRPNAPPGCHRQPYKPRTPV--NVY 60

Query: 61 TRGCSAINRCR 70
          +RGC+ INRCR
Sbjct: 61 SRGCTTINRCR 69

[Close]

BLAST of Tan0022251 vs. ExPASy Swiss-Prot
Match: O65919 (Protein RALF-like 10 OS=Arabidopsis thaliana OX=3702 GN=RALFL10 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.0e-04
Identity = 20/45 (44.44%), Postives = 24/45 (53.33%), Query Frame = 0


Query: 25 ITYLKLVDCNEPNPPPSCSSPNGEGSTPVSANAYTRGCSAINRCR 70
          + Y  +  C  PNPPP C  P  +   P  AN Y RGCS I RC+
Sbjct: 27 LDYGVITKCAGPNPPPGCYPPGAQQKNPTPANEYRRGCSKITRCK 71

[Close]

BLAST of Tan0022251 vs. NCBI nr
Match: XP_038877580.1 (protein RALF-like 11 [Benincasa hispida])

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-11
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 3  QSWLISLVLISMLVTGQDVAADITYLKLVD-CNEPNPPPSCSSPNGEGSTPVSANAYTRG 62
          +SWLI +V ISMLV G  VAA+  YL+ +D CN+PNPPP+CS    E    V AN Y RG
Sbjct: 2  KSWLICVVFISMLVVGPGVAAEKKYLQFLDPCNQPNPPPTCS----EVKEQVEANPYNRG 61

Query: 63 CSAINRCRGG 72
          CSAI+RCRGG
Sbjct: 62 CSAIHRCRGG 67

[Close]

BLAST of Tan0022251 vs. NCBI nr
Match: XP_022947821.1 (protein RALF-like 10 [Cucurbita moschata])

HSP 1 Score: 75.1 bits (183), Expect = 2.7e-10
Identity = 41/70 (58.57%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 3  QSWLISLVLISMLVTGQDVAADITYLKLVD-CNEPNPPPSCSSPNGEGSTPVSANAYTRG 62
          +SWLI LVLI MLV  QDVA++  +LK  D C +PNPPP CS  N      V AN Y RG
Sbjct: 2  RSWLICLVLIGMLVVSQDVASETKFLKFPDPCQQPNPPPGCSIGNA-----VPANPYRRG 61

Query: 63 CSAINRCRGG 72
          CS I RCRGG
Sbjct: 62 CSKITRCRGG 66

[Close]

BLAST of Tan0022251 vs. NCBI nr
Match: XP_023533089.1 (protein RALF-like 10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.5 bits (171), Expect = 6.7e-09
Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 3  QSWLISLVLISMLVTGQDVAADITYLKLVD-CNEPNPPPSCSSPNGEGSTPVSANAYTRG 62
          +SWLI +VLISMLV  Q+VA++  +LK  D C +PNPP  CS  N      V AN Y RG
Sbjct: 2  RSWLICIVLISMLVVSQEVASETKFLKFPDPCQQPNPPLGCSIGNA-----VPANPYRRG 61

Query: 63 CSAINRCRGG 72
          CS I RCRGG
Sbjct: 62 CSKITRCRGG 66

[Close]

BLAST of Tan0022251 vs. NCBI nr
Match: KAG7020863.1 (hypothetical protein SDJN02_17551, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 64.3 bits (155), Expect = 4.8e-07
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 7  ISLVLISMLVTGQDV------AADITYLKLVDCNEPNPPPSCSSPNGEGSTPVSANAYTR 66
          I L LI+ML+T Q V       + I YLK ++C+ PNPP  CS    +G   V AN Y R
Sbjct: 6  ICLALITMLMTSQQVMTNQEATSQIKYLKHLECHHPNPPAHCSLSGVKGYQHVPANPYDR 65

Query: 67 GCSAINRCRGG 72
          GCSAI+RCRGG
Sbjct: 66 GCSAIHRCRGG 76

[Close]

BLAST of Tan0022251 vs. NCBI nr
Match: KAE8637268.1 (hypothetical protein CSA_017684 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 6.3e-07
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 3  QSWLISLVLISMLVTGQDVAADITYLKLVD-CNEPNPPPSCSSPNGEGSTPVSANAYTRG 62
          +SWLI +V ISMLV  Q+V A   +LK  + C+ P+PPPSCSS   +       N Y RG
Sbjct: 2  KSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSS---KVKDHAPTNPYDRG 61

Query: 63 CSAINRCRG 71
          CSAI+RCRG
Sbjct: 62 CSAIHRCRG 67

[Close]

BLAST of Tan0022251 vs. ExPASy TrEMBL
Match: A0A0A0LI94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.0e-10
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 3  QSWLISLVLISMLVTGQDVAADITYLKLVD-CNEPNPPPSCSSPNGEGSTPVSANAYTRG 62
          +SWLI L LI MLV GQ+VAA+  +LK +D CN+P+PPP+C  PN +      AN Y R 
Sbjct: 2  KSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTC--PNRD--KVEEANPYNRD 61

Query: 63 CSAINRCRGG 72
          CSAINRCRGG
Sbjct: 62 CSAINRCRGG 67

[Close]

BLAST of Tan0022251 vs. ExPASy TrEMBL
Match: A0A6J1G7J2 (protein RALF-like 10 OS=Cucurbita moschata OX=3662 GN=LOC111451581 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 41/70 (58.57%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 3  QSWLISLVLISMLVTGQDVAADITYLKLVD-CNEPNPPPSCSSPNGEGSTPVSANAYTRG 62
          +SWLI LVLI MLV  QDVA++  +LK  D C +PNPPP CS  N      V AN Y RG
Sbjct: 2  RSWLICLVLIGMLVVSQDVASETKFLKFPDPCQQPNPPPGCSIGNA-----VPANPYRRG 61

Query: 63 CSAINRCRGG 72
          CS I RCRGG
Sbjct: 62 CSKITRCRGG 66

[Close]

BLAST of Tan0022251 vs. ExPASy TrEMBL
Match: A0A0A0M0X3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-07
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 3  QSWLISLVLISMLVTGQDVAADITYLKLVD-CNEPNPPPSCSSPNGEGSTPVSANAYTRG 62
          +SWLI +V ISMLV  Q+V A   +LK  + C+ P+PPPSCSS   +       N Y RG
Sbjct: 2  KSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSS---KVKDHAPTNPYDRG 61

Query: 63 CSAINRCRG 71
          CSAI+RCRG
Sbjct: 62 CSAIHRCRG 67

[Close]

BLAST of Tan0022251 vs. ExPASy TrEMBL
Match: A0A1S4DY33 (protein RALF-like 30 OS=Cucumis melo OX=3656 GN=LOC107991083 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.5e-06
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 3  QSWLISLVLISMLVTGQDVAADITYLKLVD-CNEPNPPPSCSSPNGEGSTPVSANAYTRG 62
          +SWLI   L+SMLV G +VAA   +LK +D C +P+PP SC   +    +P+   AY RG
Sbjct: 2  KSWLICFALLSMLVMGHEVAAKTKFLKFLDPCLQPSPPRSCYK-HERVDSPI---AYDRG 61

Query: 63 CSAINRCRGG 72
          CS I RCRGG
Sbjct: 62 CSPILRCRGG 67

[Close]

BLAST of Tan0022251 vs. ExPASy TrEMBL
Match: A0A5S9WZ68 ((thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS8264 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.3e-05
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 3  QSWLISLVLISMLVTGQDVAAD--ITYLKLVDCNEPNPPPSCSSPNGEGSTPVSANAYTR 62
          ++WLI L++I   V  + V +   I Y  +  C  PNPPP C+ P  E   P   N Y+R
Sbjct: 2  KAWLICLLVICAAVIAEPVESRNYIEYGAINKCAGPNPPPGCNPPGAEQKNPTPVNEYSR 61

Query: 63 GCSAINRCR 70
          GCS I+RCR
Sbjct: 62 GCSKIHRCR 70

[Close]

BLAST of Tan0022251 vs. TAIR 10
Match: AT2G19030.1 (ralf-like 11 )

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-08
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 3  QSWLISLVLISMLVTGQDVAAD--ITYLKLVDCNEPNPPPSCSSPNGEGSTPVSANAYTR 62
          ++WLI L++I   V  + V +   I Y  +  C  PNPPP C+ P  E   P   N Y+R
Sbjct: 2  KAWLICLLVICAAVIAEPVESRNYIEYGAINKCAGPNPPPGCNPPGAEQKNPTPVNEYSR 61

Query: 63 GCSAINRCR 70
          GCS I+RCR
Sbjct: 62 GCSKIHRCR 70

[Close]

BLAST of Tan0022251 vs. TAIR 10
Match: AT2G19040.1 (RALF-like 12 )

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-08
Identity = 28/69 (40.58%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 3  QSWLISLVLISMLVTGQDVAAD--ITYLKLVDCNEPNPPPSCSSPNGEGSTPVSANAYTR 62
          ++W+I L++I  +V  + V +   I Y  +  C  PNPPP C+ P  E   P   N Y+R
Sbjct: 2  KAWVIGLLVICAVVIAEPVESRNYIEYGAINKCAGPNPPPGCNPPGTEQKNPTPVNEYSR 61

Query: 63 GCSAINRCR 70
          GCS I+RCR
Sbjct: 62 GCSKIHRCR 70

[Close]

BLAST of Tan0022251 vs. TAIR 10
Match: AT2G19045.1 (RALF-like 13 )

HSP 1 Score: 53.9 bits (128), Expect = 6.1e-08
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 3  QSWLISLVLISMLVTGQDVAAD--ITYLKLVDCNEPNPPPSCSSPNGEGSTPVSANAYTR 62
          ++W+I L++I   V  + V +   I Y  +  C  PNPPP C+ P  E   P   N Y+R
Sbjct: 2  KAWVICLLVICAAVIAEPVESRNYIEYGAINKCAGPNPPPGCNPPGAEQKNPNPVNEYSR 61

Query: 63 GCSAINRCR 70
          GCS I+RCR
Sbjct: 62 GCSKIHRCR 70

[Close]

BLAST of Tan0022251 vs. TAIR 10
Match: AT3G25165.1 (ralf-like 25 )

HSP 1 Score: 50.4 bits (119), Expect = 6.7e-07
Identity = 32/71 (45.07%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 1  MKQSWLISLVLISMLVTGQDVAAD--ITYLKLVDCNEPNPPPSCSSPNGEGSTPVSANAY 60
          MK   +I LV+ S+L+ G+  A D    YL L  C  PN PP C     +  TPV  N Y
Sbjct: 1  MKTFMIILLVICSILIVGRVEANDNKRKYLLLDPCLRPNAPPGCHRQPYKPRTPV--NVY 60

Query: 61 TRGCSAINRCR 70
          +RGC+ INRCR
Sbjct: 61 SRGCTTINRCR 69

[Close]

BLAST of Tan0022251 vs. TAIR 10
Match: AT2G19020.1 (ralf-like 10 )

HSP 1 Score: 47.0 bits (110), Expect = 7.4e-06
Identity = 20/45 (44.44%), Postives = 24/45 (53.33%), Query Frame = 0


Query: 25 ITYLKLVDCNEPNPPPSCSSPNGEGSTPVSANAYTRGCSAINRCR 70
          + Y  +  C  PNPPP C  P  +   P  AN Y RGCS I RC+
Sbjct: 27 LDYGVITKCAGPNPPPGCYPPGAQQKNPTPANEYRRGCSKITRCK 71

The following BLAST results are available for this feature:

BLAST of Tan0022251 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64466	1.7e-07	42.03	Protein RALF-like 11 OS=Arabidopsis thaliana OX=3702 GN=RALFL11 PE=3 SV=1	[more]
F4ISE1	2.9e-07	40.58	Protein RALF-like 12 OS=Arabidopsis thaliana OX=3702 GN=RALFL12 PE=2 SV=1	[more]
F4ISE2	8.5e-07	40.58	Protein RALF-like 13 OS=Arabidopsis thaliana OX=3702 GN=RALFL13 PE=3 SV=1	[more]
Q9LSG0	9.4e-06	45.07	Protein RALF-like 25 OS=Arabidopsis thaliana OX=3702 GN=RALFL25 PE=3 SV=1	[more]
O65919	1.0e-04	44.44	Protein RALF-like 10 OS=Arabidopsis thaliana OX=3702 GN=RALFL10 PE=2 SV=1	[more]

BLAST of Tan0022251 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877580.1	2.5e-11	60.00	protein RALF-like 11 [Benincasa hispida]	[more]
XP_022947821.1	2.7e-10	58.57	protein RALF-like 10 [Cucurbita moschata]	[more]
XP_023533089.1	6.7e-09	55.71	protein RALF-like 10 [Cucurbita pepo subsp. pepo]	[more]
KAG7020863.1	4.8e-07	50.70	hypothetical protein SDJN02_17551, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8637268.1	6.3e-07	52.17	hypothetical protein CSA_017684 [Cucumis sativus]	[more]

BLAST of Tan0022251 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI94	1.0e-10	58.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=3 SV=1	[more]
A0A6J1G7J2	1.3e-10	58.57	protein RALF-like 10 OS=Cucurbita moschata OX=3662 GN=LOC111451581 PE=3 SV=1	[more]
A0A0A0M0X3	3.0e-07	52.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=3 SV=1	[more]
A0A1S4DY33	7.5e-06	50.00	protein RALF-like 30 OS=Cucumis melo OX=3656 GN=LOC107991083 PE=3 SV=1	[more]
A0A5S9WZ68	6.3e-05	42.03	(thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS8...	[more]

BLAST of Tan0022251 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19030.1	1.2e-08	42.03	ralf-like 11	[more]
AT2G19040.1	2.1e-08	40.58	RALF-like 12	[more]
AT2G19045.1	6.1e-08	40.58	RALF-like 13	[more]
AT3G25165.1	6.7e-07	45.07	ralf-like 25	[more]
AT2G19020.1	7.4e-06	44.44	ralf-like 10	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 31..70 e-value: 3.4E-8 score: 34.3
None	No IPR available	PANTHER	PTHR34270:SF5	PROTEIN RALF-LIKE 10-RELATED	coord: 3..71
None	No IPR available	PANTHER	PTHR34270	PROTEIN RALF-LIKE 15-RELATED	coord: 3..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0022251.1	Tan0022251.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity