Tan0022228 (gene) Snake gourd v1

Overview


Name	Tan0022228
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	LG05: 75463232 .. 75464150 (+)
RNA-Seq Expression	Tan0022228
Synteny	Tan0022228

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACTGTCATGACCCAGGCTTCGGCCGTCTTCCGACCATGTGCGTCGAGATCGAGGTTCCTTTCGGGGTCGTCAAGAAAGTTTAACAGAACTTTGTCTGTTAAGCCAACAACTTCTCCAGTTCCCAGTTCTTTCAAAGTTGAGGCCAAGAAGGGAGAGTGGCTACCAGGTTTGCCATCACCAGCTTACCTTGATGGCAGGTACTGATTATATCAAACACAAGAGATCTGGAAATTGAGATTTGAATTTAACATACTTAAAATCATTTTTGTTTGCAGTCTAGCAGGTGACAATGGATTTGATCCTCTGGGACTTGCAGAGGACCCTGAAAACTTGAGGTGGTATGTGCAAGCAGAGCTAGTGAATGGTCGATGGGCGATGCTCGGAGTTGCAGGTATGCTATTGCCTGAAGTCTTCACAAGTTTTGGAATCATCAACGTACCGAAATGGTACGATGCTGGGAAAGCCGAATATTTCGCATCGTCGTCGACTCTCTTTGTGATTGAGTTCATTCTGTTTCATTATGTGGAAATCAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTAAACCAAGATCCCATTTTCAAGCAATACAGCTTGCCACCAAATGATGTTGGATATCCAGGGGGAATTTTCAATCCACTCAACTTTGAGCCAACTCTTGAGGCCAAGGAAAAGGAGATTGCTAATGGTAAATGCCTCAGAAACAAAACTAGCTAATCAAAGTTGCTCAATTACTTGTATAATGATGAAACTAATCAAGTTTTGATCATCTACAGGAAGATTGGCAATGTTGGCATTCTTGGGATTCATTGTTCAACACAATGTGACTGGAAAAGGTCCATTTGACAACTTCTTGCAGCACATTACAGATCCATGGCACAACACTATTCTCCAAACACTAAGGGGATAG

mRNA sequence

ATGGCAACTGTCATGACCCAGGCTTCGGCCGTCTTCCGACCATGTGCGTCGAGATCGAGGTTCCTTTCGGGGTCGTCAAGAAAGTTTAACAGAACTTTGTCTGTTAAGCCAACAACTTCTCCAGTTCCCAGTTCTTTCAAAGTTGAGGCCAAGAAGGGAGAGTGGCTACCAGGTTTGCCATCACCAGCTTACCTTGATGGCAGTCTAGCAGGTGACAATGGATTTGATCCTCTGGGACTTGCAGAGGACCCTGAAAACTTGAGGTGGTATGTGCAAGCAGAGCTAGTGAATGGTCGATGGGCGATGCTCGGAGTTGCAGGTATGCTATTGCCTGAAGTCTTCACAAGTTTTGGAATCATCAACGTACCGAAATGGTACGATGCTGGGAAAGCCGAATATTTCGCATCGTCGTCGACTCTCTTTGTGATTGAGTTCATTCTGTTTCATTATGTGGAAATCAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTAAACCAAGATCCCATTTTCAAGCAATACAGCTTGCCACCAAATGATGTTGGATATCCAGGGGGAATTTTCAATCCACTCAACTTTGAGCCAACTCTTGAGGCCAAGGAAAAGGAGATTGCTAATGGAAGATTGGCAATGTTGGCATTCTTGGGATTCATTGTTCAACACAATGTGACTGGAAAAGGTCCATTTGACAACTTCTTGCAGCACATTACAGATCCATGGCACAACACTATTCTCCAAACACTAAGGGGATAG

Coding sequence (CDS)

ATGGCAACTGTCATGACCCAGGCTTCGGCCGTCTTCCGACCATGTGCGTCGAGATCGAGGTTCCTTTCGGGGTCGTCAAGAAAGTTTAACAGAACTTTGTCTGTTAAGCCAACAACTTCTCCAGTTCCCAGTTCTTTCAAAGTTGAGGCCAAGAAGGGAGAGTGGCTACCAGGTTTGCCATCACCAGCTTACCTTGATGGCAGTCTAGCAGGTGACAATGGATTTGATCCTCTGGGACTTGCAGAGGACCCTGAAAACTTGAGGTGGTATGTGCAAGCAGAGCTAGTGAATGGTCGATGGGCGATGCTCGGAGTTGCAGGTATGCTATTGCCTGAAGTCTTCACAAGTTTTGGAATCATCAACGTACCGAAATGGTACGATGCTGGGAAAGCCGAATATTTCGCATCGTCGTCGACTCTCTTTGTGATTGAGTTCATTCTGTTTCATTATGTGGAAATCAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTAAACCAAGATCCCATTTTCAAGCAATACAGCTTGCCACCAAATGATGTTGGATATCCAGGGGGAATTTTCAATCCACTCAACTTTGAGCCAACTCTTGAGGCCAAGGAAAAGGAGATTGCTAATGGAAGATTGGCAATGTTGGCATTCTTGGGATTCATTGTTCAACACAATGTGACTGGAAAAGGTCCATTTGACAACTTCTTGCAGCACATTACAGATCCATGGCACAACACTATTCTCCAAACACTAAGGGGATAG

Protein sequence

MATVMTQASAVFRPCASRSRFLSGSSRKFNRTLSVKPTTSPVPSSFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHITDPWHNTILQTLRG

Homology

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BLAST of Tan0022228 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 7.4e-122
Identity = 211/251 (84.06%), Postives = 222/251 (88.45%), Query Frame = 0


Query: 1   MATVMTQAS-AVFRPCASRSRFLSGSSRKFNRTLSVKPTTSPVPSSFKVEAKKGEWLPGL 60
           MATV TQAS A+F PC  +SRFL GSS K NR ++ +P      +SFKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFGI 120
            SP YL GSL GDNGFDPLGLAEDPENLRW+VQAELVNGRWAMLGVAGMLLPEVFTS GI
Sbjct: 61  ASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP  
Sbjct: 121 INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAG 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHITDP 240
           +VGYPGGIFNPLNF PTLEAKEKEIANGRLAMLAFLGFI+QHNVTGKGPFDN LQHI+DP
Sbjct: 181 EVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDP 240

Query: 241 WHNTILQTLRG 251
           WHNTI+QTL G
Sbjct: 241 WHNTIVQTLGG 251

[Close]

BLAST of Tan0022228 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 3.4e-119
Identity = 206/249 (82.73%), Postives = 222/249 (89.16%), Query Frame = 0


Query: 1   MATVMTQASA-VFRPCASRSRFLSGSSRKFNRTLSVKPT-TSPVPSSFKVEAKKGEWLPG 60
           MATV T ASA +FRPC S+ RFL+GSS + NR LS     +S   SSFKVEAKKGEWLPG
Sbjct: 1   MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPG 60

Query: 61  LPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFG 120
           L SP YL GSLAGDNGFDPLGLAEDPENL+W+VQAELVNGRWAMLGVAGMLLPEVFT  G
Sbjct: 61  LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120

Query: 121 IINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 180
           IINVP+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 
Sbjct: 121 IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPK 180

Query: 181 NDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHITD 240
            +VGYPGGIFNPLNF PT EAKEKE+ANGRLAMLAFLGF+VQHNVTGKGPF+N LQH++D
Sbjct: 181 GEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD 240

Query: 241 PWHNTILQT 248
           PWHNTI+QT
Sbjct: 241 PWHNTIVQT 249

[Close]

BLAST of Tan0022228 vs. ExPASy Swiss-Prot
Match: Q36718 (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare OX=4513 GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 2.2e-86
Identity = 153/227 (67.40%), Postives = 176/227 (77.53%), Query Frame = 0


Query: 28  KFNRTLSVKPTTSPVPSSFKVEA---KKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDP 87
           +F   +   P  S  P S + +     KG WLPGL SPAYLDGSL GDNGFDPL LAEDP
Sbjct: 6   RFRTRVPPSPAASGSPRSTRRDVAVQAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDP 65

Query: 88  ENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFGIINVPKWYD-AGKAEYFASSSTLFVI 147
           E+LRW+VQA++VNGRWAMLGVAGML+PEV T  G++N P+W    GK  YFASSST   +
Sbjct: 66  EDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRV 125

Query: 148 EFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKE 207
             +   YVEIRRWQDIKNPGSVNQDPIFK YSLPP++ GYPG +FNPLNF P LE KEKE
Sbjct: 126 H-MSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAP-LENKEKE 185

Query: 208 IANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHITDPWHNTILQTLRG 251
           +ANGRLAMLAFLGF+VQHNV GKGPF+N  QH+ DPWHNTI+QT+ G
Sbjct: 186 LANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQTISG 230

[Close]

BLAST of Tan0022228 vs. ExPASy Swiss-Prot
Match: Q9SYW8 (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.6e-60
Identity = 122/252 (48.41%), Postives = 151/252 (59.92%), Query Frame = 0


Query: 1   MATVMTQASAVFRPCASRSRFLSGSSRKFNRTLSVKPTTSPVPSSFKVEAKKGE--WLPG 60
           MA+ +  +SA+     S   FL G   +  + L+V   + P  S   V A      W PG
Sbjct: 1   MASSLCASSAI--AAISSPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPG 60

Query: 61  LPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFG 120
              P +LDGSL GD GFDPLGL+ DP++L+W VQAE+V+ RWAMLG AG+ +PE  T  G
Sbjct: 61  STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIG 120

Query: 121 IINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 180
           I+N P WY AG+ EYF   +TLFV+E IL  + E RRW DI  PGSVN DP+F    L  
Sbjct: 121 ILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTG 180

Query: 181 NDVGYPGGI-FNPLNF-----EPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNF 240
            DVGYPGG+ F+PL +         E + KEI NGRLAMLA +G   QH  TG GP DN 
Sbjct: 181 TDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 240

Query: 241 LQHITDPWHNTI 245
             H+ DP H TI
Sbjct: 241 FAHLADPGHATI 250

[Close]

BLAST of Tan0022228 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.1e-60
Identity = 114/235 (48.51%), Postives = 145/235 (61.70%), Query Frame = 0


Query: 16  ASRSRFLSGSSRKFNRTLSVKPTTSPVPSSFKVEAKKGEWLPGLPSPAYLDGSLAGDNGF 75
           A+++ FL G   + ++ ++   + S   S+   +  +  W PG   P +LDGSL GD GF
Sbjct: 29  ATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGF 88

Query: 76  DPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFGIINVPKWYDAGKAEYFA 135
           DPLGL  DPE+L+W  QAELV+ RWAMLG AG+ +PE  T  G++N P WY AG+ EYF 
Sbjct: 89  DPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFT 148

Query: 136 SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGI-FNPLNF- 195
            ++TLFVIE +L  + E RRW DI  PG VN DPIF    L   DVGYPGG+ F+PL + 
Sbjct: 149 DTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 208

Query: 196 ----EPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHITDPWHNTI 245
                   E + KEI NGRLAMLA +G   QH  TG GP DN   H+ DP H TI
Sbjct: 209 SGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 263

[Close]

BLAST of Tan0022228 vs. NCBI nr
Match: XP_038894825.1 (chlorophyll a-b binding protein P4, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 495.4 bits (1274), Expect = 3.0e-136
Identity = 239/251 (95.22%), Postives = 243/251 (96.81%), Query Frame = 0


Query: 1   MATVMTQASA-VFRPCASRSRFLSGSSRKFNRTLSVKPTTSPVPSSFKVEAKKGEWLPGL 60
           MATVMTQASA VFRPC  RSRFLS +S KFNR LSVKPTTS VP+SFKVEAKKGEWLPGL
Sbjct: 1   MATVMTQASASVFRPCTLRSRFLSRTSGKFNRGLSVKPTTSSVPNSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFGI 120
           PSPAYLDGSL GDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFGI
Sbjct: 61  PSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHITDP 240
           DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHI+DP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP 240

Query: 241 WHNTILQTLRG 251
           WHNTI+QTLRG
Sbjct: 241 WHNTIVQTLRG 251

[Close]

BLAST of Tan0022228 vs. NCBI nr
Match: XP_022137160.1 (chlorophyll a-b binding protein P4, chloroplastic-like [Momordica charantia])

HSP 1 Score: 494.2 bits (1271), Expect = 6.6e-136
Identity = 238/251 (94.82%), Postives = 241/251 (96.02%), Query Frame = 0


Query: 1   MATVMTQAS-AVFRPCASRSRFLSGSSRKFNRTLSVKPTTSPVPSSFKVEAKKGEWLPGL 60
           MAT MTQAS AVFRPCASRSRFLSGSS KFNR LSVKPT S +P  FKVEAKKGEWLPGL
Sbjct: 1   MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFGI 120
           PSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTS GI
Sbjct: 61  PSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSIGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKXYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHITDP 240
           DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHI+DP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP 240

Query: 241 WHNTILQTLRG 251
           WHNTI+QTLRG
Sbjct: 241 WHNTIIQTLRG 251

[Close]

BLAST of Tan0022228 vs. NCBI nr
Match: XP_023524863.1 (chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 492.7 bits (1267), Expect = 1.9e-135
Identity = 237/251 (94.42%), Postives = 242/251 (96.41%), Query Frame = 0


Query: 1   MATVMTQAS-AVFRPCASRSRFLSGSSRKFNRTLSVKPTTSPVPSSFKVEAKKGEWLPGL 60
           M+ VM QAS AVFRP ASRSRFLSGSS KFNR LSVKPTTS VPSSFKVEAKKGEWLPGL
Sbjct: 1   MSIVMIQASAAVFRPSASRSRFLSGSSGKFNRALSVKPTTSSVPSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFGI 120
           PSP YLDGSL GDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTS+GI
Sbjct: 61  PSPVYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSYGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHITDP 240
           DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFI+QHNVTGKGPFDNFLQHI+DP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNFLQHISDP 240

Query: 241 WHNTILQTLRG 251
           WHNTI+QTLRG
Sbjct: 241 WHNTIVQTLRG 251

[Close]

BLAST of Tan0022228 vs. NCBI nr
Match: XP_022949090.1 (chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 491.1 bits (1263), Expect = 5.6e-135
Identity = 237/251 (94.42%), Postives = 242/251 (96.41%), Query Frame = 0


Query: 1   MATVMTQAS-AVFRPCASRSRFLSGSSRKFNRTLSVKPTTSPVPSSFKVEAKKGEWLPGL 60
           M+ VM QAS AVFRP ASRSRFL GSS KFNR LSVKPTTS VPSSFKVEAKKGEWLPGL
Sbjct: 1   MSIVMIQASAAVFRPSASRSRFLLGSSGKFNRALSVKPTTSLVPSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFGI 120
           PSPAYLDGSL GDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTS+GI
Sbjct: 61  PSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSYGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHITDP 240
           DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFI+QHNVTGKGPFDNFLQHI+DP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNFLQHISDP 240

Query: 241 WHNTILQTLRG 251
           WHNTI+QTLRG
Sbjct: 241 WHNTIVQTLRG 251

[Close]

BLAST of Tan0022228 vs. NCBI nr
Match: XP_022998805.1 (chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 490.7 bits (1262), Expect = 7.3e-135
Identity = 237/251 (94.42%), Postives = 242/251 (96.41%), Query Frame = 0


Query: 1   MATVMTQAS-AVFRPCASRSRFLSGSSRKFNRTLSVKPTTSPVPSSFKVEAKKGEWLPGL 60
           M+ VM QAS AVFRP ASRSRFLSGSS KFNR LSVKPTTS VPSSFKVEAKKGEWLPGL
Sbjct: 1   MSIVMIQASAAVFRPSASRSRFLSGSSGKFNRALSVKPTTSLVPSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFGI 120
           PSPAYLDGSL GDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTS GI
Sbjct: 61  PSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSNGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHITDP 240
           DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFI+QHNVTGKGPFDNFLQHI+DP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNFLQHISDP 240

Query: 241 WHNTILQTLRG 251
           WHNT++QTLRG
Sbjct: 241 WHNTVVQTLRG 251

[Close]

BLAST of Tan0022228 vs. ExPASy TrEMBL
Match: A0A6J1C5V9 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008702 PE=3 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 3.2e-136
Identity = 238/251 (94.82%), Postives = 241/251 (96.02%), Query Frame = 0


Query: 1   MATVMTQAS-AVFRPCASRSRFLSGSSRKFNRTLSVKPTTSPVPSSFKVEAKKGEWLPGL 60
           MAT MTQAS AVFRPCASRSRFLSGSS KFNR LSVKPT S +P  FKVEAKKGEWLPGL
Sbjct: 1   MATAMTQASAAVFRPCASRSRFLSGSSGKFNRALSVKPTASSLPCYFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFGI 120
           PSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTS GI
Sbjct: 61  PSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSIGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKXYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHITDP 240
           DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHI+DP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDP 240

Query: 241 WHNTILQTLRG 251
           WHNTI+QTLRG
Sbjct: 241 WHNTIIQTLRG 251

[Close]

BLAST of Tan0022228 vs. ExPASy TrEMBL
Match: A0A6J1GBT1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452545 PE=3 SV=1)

HSP 1 Score: 491.1 bits (1263), Expect = 2.7e-135
Identity = 237/251 (94.42%), Postives = 242/251 (96.41%), Query Frame = 0


Query: 1   MATVMTQAS-AVFRPCASRSRFLSGSSRKFNRTLSVKPTTSPVPSSFKVEAKKGEWLPGL 60
           M+ VM QAS AVFRP ASRSRFL GSS KFNR LSVKPTTS VPSSFKVEAKKGEWLPGL
Sbjct: 1   MSIVMIQASAAVFRPSASRSRFLLGSSGKFNRALSVKPTTSLVPSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFGI 120
           PSPAYLDGSL GDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTS+GI
Sbjct: 61  PSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSYGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHITDP 240
           DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFI+QHNVTGKGPFDNFLQHI+DP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNFLQHISDP 240

Query: 241 WHNTILQTLRG 251
           WHNTI+QTLRG
Sbjct: 241 WHNTIVQTLRG 251

[Close]

BLAST of Tan0022228 vs. ExPASy TrEMBL
Match: A0A6J1KDI3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493358 PE=3 SV=1)

HSP 1 Score: 490.7 bits (1262), Expect = 3.5e-135
Identity = 237/251 (94.42%), Postives = 242/251 (96.41%), Query Frame = 0


Query: 1   MATVMTQAS-AVFRPCASRSRFLSGSSRKFNRTLSVKPTTSPVPSSFKVEAKKGEWLPGL 60
           M+ VM QAS AVFRP ASRSRFLSGSS KFNR LSVKPTTS VPSSFKVEAKKGEWLPGL
Sbjct: 1   MSIVMIQASAAVFRPSASRSRFLSGSSGKFNRALSVKPTTSLVPSSFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFGI 120
           PSPAYLDGSL GDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTS GI
Sbjct: 61  PSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSNGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHITDP 240
           DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFI+QHNVTGKGPFDNFLQHI+DP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNFLQHISDP 240

Query: 241 WHNTILQTLRG 251
           WHNT++QTLRG
Sbjct: 241 WHNTVVQTLRG 251

[Close]

BLAST of Tan0022228 vs. ExPASy TrEMBL
Match: A0A0A0LTE5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G033310 PE=3 SV=1)

HSP 1 Score: 487.6 bits (1254), Expect = 3.0e-134
Identity = 231/250 (92.40%), Postives = 242/250 (96.80%), Query Frame = 0


Query: 1   MATVMTQASA-VFRPCASRSRFLSGSSRKFNRTLSVKPTTSPVPSSFKVEAKKGEWLPGL 60
           MATV+TQASA VFRPCASRSRFLSGSS KFNR LSVKPTTS +P++FKVEAKKGEWLPGL
Sbjct: 1   MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFGI 120
           PSP YLDGSL GDNGFDPLGLAEDPENLRWY QAELVNGRWAMLGVAGM+LPEV T++GI
Sbjct: 61  PSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHITDP 240
           DVGYPGGIFNPLNFEPTLEA+EKEIANGRLAMLAFLGFIVQHNVTGKGPFDNF+QHI+DP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDP 240

Query: 241 WHNTILQTLR 250
           WHNTI+QTLR
Sbjct: 241 WHNTIVQTLR 250

[Close]

BLAST of Tan0022228 vs. ExPASy TrEMBL
Match: A0A2C9VP65 (Chlorophyll a-b binding protein, chloroplastic OS=Manihot esculenta OX=3983 GN=MANES_06G091400 PE=3 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 3.2e-128
Identity = 220/251 (87.65%), Postives = 236/251 (94.02%), Query Frame = 0


Query: 1   MATVMTQAS-AVFRPCASRSRFLSGSSRKFNRTLSVKPTTSPVPSSFKVEAKKGEWLPGL 60
           MATV+TQAS AVFRPCASRSRFL+GSS K NR +S+KP  S   +SFKVEAKKGEWLPGL
Sbjct: 1   MATVITQASAAVFRPCASRSRFLTGSSSKLNREVSLKPMLSSPAASFKVEAKKGEWLPGL 60

Query: 61  PSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFGI 120
           PSPAYL+GSL GDNGFDPLGLAEDPENL+WY+QAELVNGRWAMLGVAGMLLPEVFT  G+
Sbjct: 61  PSPAYLNGSLPGDNGFDPLGLAEDPENLKWYIQAELVNGRWAMLGVAGMLLPEVFTKIGV 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVP+WYDAGK EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPQWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHITDP 240
           +VGYPGGIFNPLNF PTLEAKEKE+ANGRLAMLAFLGF+VQHNVTGKGPFDN LQH++DP
Sbjct: 181 EVGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFDNLLQHLSDP 240

Query: 241 WHNTILQTLRG 251
           WHNTI+QTLRG
Sbjct: 241 WHNTIVQTLRG 251

[Close]

BLAST of Tan0022228 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 429.1 bits (1102), Expect = 2.4e-120
Identity = 206/249 (82.73%), Postives = 222/249 (89.16%), Query Frame = 0


Query: 1   MATVMTQASA-VFRPCASRSRFLSGSSRKFNRTLSVKPT-TSPVPSSFKVEAKKGEWLPG 60
           MATV T ASA +FRPC S+ RFL+GSS + NR LS     +S   SSFKVEAKKGEWLPG
Sbjct: 1   MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPG 60

Query: 61  LPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFG 120
           L SP YL GSLAGDNGFDPLGLAEDPENL+W+VQAELVNGRWAMLGVAGMLLPEVFT  G
Sbjct: 61  LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120

Query: 121 IINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 180
           IINVP+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 
Sbjct: 121 IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPK 180

Query: 181 NDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHITD 240
            +VGYPGGIFNPLNF PT EAKEKE+ANGRLAMLAFLGF+VQHNVTGKGPF+N LQH++D
Sbjct: 181 GEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD 240

Query: 241 PWHNTILQT 248
           PWHNTI+QT
Sbjct: 241 PWHNTIVQT 249

[Close]

BLAST of Tan0022228 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 234.2 bits (596), Expect = 1.2e-61
Identity = 122/252 (48.41%), Postives = 151/252 (59.92%), Query Frame = 0


Query: 1   MATVMTQASAVFRPCASRSRFLSGSSRKFNRTLSVKPTTSPVPSSFKVEAKKGE--WLPG 60
           MA+ +  +SA+     S   FL G   +  + L+V   + P  S   V A      W PG
Sbjct: 1   MASSLCASSAI--AAISSPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPG 60

Query: 61  LPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSFG 120
              P +LDGSL GD GFDPLGL+ DP++L+W VQAE+V+ RWAMLG AG+ +PE  T  G
Sbjct: 61  STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIG 120

Query: 121 IINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 180
           I+N P WY AG+ EYF   +TLFV+E IL  + E RRW DI  PGSVN DP+F    L  
Sbjct: 121 ILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTG 180

Query: 181 NDVGYPGGI-FNPLNF-----EPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNF 240
            DVGYPGG+ F+PL +         E + KEI NGRLAMLA +G   QH  TG GP DN 
Sbjct: 181 TDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 240

Query: 241 LQHITDPWHNTI 245
             H+ DP H TI
Sbjct: 241 FAHLADPGHATI 250

[Close]

BLAST of Tan0022228 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 219.9 bits (559), Expect = 2.2e-57
Identity = 112/227 (49.34%), Postives = 152/227 (66.96%), Query Frame = 0


Query: 31  RTLSVKPTTSPVPSSFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWY 90
           R  SVK     +  +  VE  +  WLPGL  P YLDG+LAGD GFDPLGL EDPE+L+WY
Sbjct: 27  RISSVKAAGGGINPTVAVE--RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWY 86

Query: 91  VQAELVNGRWAMLGVAGMLLPEVFTSFGIINVPKWYDAGKAEY-FASSSTLFVIEFILFH 150
           VQAELV+ R+AMLGVAG+L  ++  + GI N+P WY+AG  ++ FAS+ TL V++F+L  
Sbjct: 87  VQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMG 146

Query: 151 YVEIRRWQDIKNPGSVNQDPIF---KQYSLPPNDVGYPGG-IFNPLNFEPTLEA----KE 210
           + E +R+ D  +PGS  ++  F    + +L   + GYPGG + NPL     ++     K 
Sbjct: 147 FAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKL 206

Query: 211 KEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHITDPWHNTILQTL 249
           KEI NGRLAM+A LGF VQ +VT  GP DN ++H+++PWH TI+QTL
Sbjct: 207 KEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251

[Close]

BLAST of Tan0022228 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 219.9 bits (559), Expect = 2.2e-57
Identity = 112/227 (49.34%), Postives = 152/227 (66.96%), Query Frame = 0


Query: 31  RTLSVKPTTSPVPSSFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWY 90
           R  SVK     +  +  VE  +  WLPGL  P YLDG+LAGD GFDPLGL EDPE+L+WY
Sbjct: 27  RISSVKAAGGGINPTVAVE--RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWY 86

Query: 91  VQAELVNGRWAMLGVAGMLLPEVFTSFGIINVPKWYDAGKAEY-FASSSTLFVIEFILFH 150
           VQAELV+ R+AMLGVAG+L  ++  + GI N+P WY+AG  ++ FAS+ TL V++F+L  
Sbjct: 87  VQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMG 146

Query: 151 YVEIRRWQDIKNPGSVNQDPIF---KQYSLPPNDVGYPGG-IFNPLNFEPTLEA----KE 210
           + E +R+ D  +PGS  ++  F    + +L   + GYPGG + NPL     ++     K 
Sbjct: 147 FAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKL 206

Query: 211 KEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHITDPWHNTILQTL 249
           KEI NGRLAM+A LGF VQ +VT  GP DN ++H+++PWH TI+QTL
Sbjct: 207 KEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251

[Close]

BLAST of Tan0022228 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 206.8 bits (525), Expect = 2.0e-53
Identity = 95/193 (49.22%), Postives = 120/193 (62.18%), Query Frame = 0


Query: 55  WLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVF 114
           W PG   P +LDGSL GD GFDPLGL  DP+ L+W+ QAEL++ RWAML V G+++PE  
Sbjct: 68  WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECL 127

Query: 115 TSFGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 174
              G I    WYDAG  EYFA S+TLFV + +L  + E RRW D+  PGSV+ +P +   
Sbjct: 128 ERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHK 187

Query: 175 SLPPNDVGYPGGIFNPLNF------EPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGP 234
             P  DVGYPGG++           EP +  + KEI NGRLAMLAFLGF  Q   T + P
Sbjct: 188 VNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDP 247

Query: 235 FDNFLQHITDPWH 242
            +N + H+ DP H
Sbjct: 248 IENLMAHLADPGH 260

The following BLAST results are available for this feature:

BLAST of Tan0022228 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SQL2	7.4e-122	84.06	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh...	[more]
P27521	3.4e-119	82.73	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q36718	2.2e-86	67.40	Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulga...	[more]
Q9SYW8	1.6e-60	48.41	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]
P13869	2.1e-60	48.51	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]

BLAST of Tan0022228 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894825.1	3.0e-136	95.22	chlorophyll a-b binding protein P4, chloroplastic-like [Benincasa hispida]	[more]
XP_022137160.1	6.6e-136	94.82	chlorophyll a-b binding protein P4, chloroplastic-like [Momordica charantia]	[more]
XP_023524863.1	1.9e-135	94.42	chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita pepo subsp. pe...	[more]
XP_022949090.1	5.6e-135	94.42	chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita moschata]	[more]
XP_022998805.1	7.3e-135	94.42	chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Tan0022228 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C5V9	3.2e-136	94.82	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1GBT1	2.7e-135	94.42	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1KDI3	3.5e-135	94.42	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0LTE5	3.0e-134	92.40	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A2C9VP65	3.2e-128	87.65	Chlorophyll a-b binding protein, chloroplastic OS=Manihot esculenta OX=3983 GN=M...	[more]

BLAST of Tan0022228 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47470.1	2.4e-120	82.73	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT3G61470.1	1.2e-61	48.41	photosystem I light harvesting complex gene 2	[more]
AT1G45474.1	2.2e-57	49.34	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	2.2e-57	49.34	photosystem I light harvesting complex gene 5	[more]
AT1G19150.1	2.0e-53	49.22	photosystem I light harvesting complex gene 6	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 62..221 e-value: 4.7E-49 score: 167.0
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 62..241 e-value: 1.3E-66 score: 226.0
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..250
None	No IPR available	PANTHER	PTHR21649:SF109	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 1..250
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 52..248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0022228.1	Tan0022228.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009409	response to cold
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009645	response to low light intensity stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019904	protein domain specific binding