Tan0022200 (gene) Snake gourd v1

Overview


Name	Tan0022200
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG09: 66822271 .. 66822603 (-)
RNA-Seq Expression	Tan0022200
Synteny	Tan0022200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTGAAGGCATCCGCAACAAAACTAGCACTTGTATTCCTAATTTTCATAGCTATTATTTTATCACCACCAACGATGGCCCAAACCACGGCGGCATTAGCAGCAGCACCTAGTACTCCATCATCATTAATAGAAGATATCTCCTTCAAGAGATGTGCACCCTTGATTTTAGAGGCGACCATGTGTGTGGCAGATATCATCAAGTTCCCAATCTCTTCTCATCCTGCTTGTTGCAAAGCCTTTTTTAAGATCAACGATTGTGACCCCAACTTTCTCAAACACATTTCTCCTGCTCATTTGAATTTGATTAAGAAGATTTGTGATTTTTGA

mRNA sequence

ATGGCGGTGAAGGCATCCGCAACAAAACTAGCACTTGTATTCCTAATTTTCATAGCTATTATTTTATCACCACCAACGATGGCCCAAACCACGGCGGCATTAGCAGCAGCACCTAGTACTCCATCATCATTAATAGAAGATATCTCCTTCAAGAGATGTGCACCCTTGATTTTAGAGGCGACCATGTGTGTGGCAGATATCATCAAGTTCCCAATCTCTTCTCATCCTGCTTGTTGCAAAGCCTTTTTTAAGATCAACGATTGTGACCCCAACTTTCTCAAACACATTTCTCCTGCTCATTTGAATTTGATTAAGAAGATTTGTGATTTTTGA

Coding sequence (CDS)

ATGGCGGTGAAGGCATCCGCAACAAAACTAGCACTTGTATTCCTAATTTTCATAGCTATTATTTTATCACCACCAACGATGGCCCAAACCACGGCGGCATTAGCAGCAGCACCTAGTACTCCATCATCATTAATAGAAGATATCTCCTTCAAGAGATGTGCACCCTTGATTTTAGAGGCGACCATGTGTGTGGCAGATATCATCAAGTTCCCAATCTCTTCTCATCCTGCTTGTTGCAAAGCCTTTTTTAAGATCAACGATTGTGACCCCAACTTTCTCAAACACATTTCTCCTGCTCATTTGAATTTGATTAAGAAGATTTGTGATTTTTGA

Protein sequence

MAVKASATKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLIEDISFKRCAPLILEATMCVADIIKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKICDF

Homology

[Close]

BLAST of Tan0022200 vs. NCBI nr
Match: KAA0050069.1 (hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK10341.1 hypothetical protein E5676_scaffold367G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 3.8e-19
Identity = 56/107 (52.34%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 2   AVKASATKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLIEDISFKRCAPLILEAT 61
           ++  SA KL LVFL+ IAI+    TMA TTAA A +PS P    ++  F +CAP ILEAT
Sbjct: 5   SLNVSAMKLVLVFLVCIAILAPSTTMADTTAA-APSPSVP----QNFPFLKCAPFILEAT 64

Query: 62  MCVADIIKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 109
           +CV D+IKFPI+ HP+CCKA  K+NDC P   + I    +++IKKIC
Sbjct: 65  LCVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKIC 106

[Close]

BLAST of Tan0022200 vs. NCBI nr
Match: TYK10334.1 (hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 6.1e-17
Identity = 52/100 (52.00%), Postives = 68/100 (68.00%), Query Frame = 0


Query: 9   KLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLIEDISFKRCAPLILEATMCVADII 68
           KL LVFL+ IAI+    TMA TTAA A +PS P    ++  F +CAP ILEAT+CV  +I
Sbjct: 2   KLVLVFLVCIAILAPSTTMAGTTAA-APSPSVP----QNFPFLKCAPFILEATLCVTGVI 61

Query: 69  KFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 109
           KFPI+ HP+CCKA  K+ DC P+  + I  + +N+IKK C
Sbjct: 62  KFPIAPHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTC 96

[Close]

BLAST of Tan0022200 vs. NCBI nr
Match: KAA0050072.1 (hypothetical protein E6C27_scaffold675G00540 [Cucumis melo var. makuwa] >TYK10333.1 hypothetical protein E5676_scaffold367G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 3.0e-16
Identity = 48/107 (44.86%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 2   AVKASATKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLIEDISFKRCAPLILEAT 61
           ++KAS  K A VF++ IAI+ +  T  +T ++    P    S+ +++SF  CAP I + T
Sbjct: 5   SLKASPIKSASVFIVSIAILAASVTAGRTVSSTTLDP----SMSQNLSFFSCAPFIFDVT 64

Query: 62  MCVADIIKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 109
           +C+ D+ KFPIS HP CCKA FK+NDC P   + I PA +++IKKIC
Sbjct: 65  LCLVDVFKFPISPHPLCCKAIFKLNDCAPVVFQTIPPADMDVIKKIC 107

[Close]

BLAST of Tan0022200 vs. NCBI nr
Match: KAE8653023.1 (hypothetical protein Csa_023561, partial [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 3.0e-16
Identity = 47/107 (43.93%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 2   AVKASATKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLIEDISFKRCAPLILEAT 61
           ++KAS  KLALVF++ IAI+ +  T  +T   + ++ +   S+ +D+SF  C P IL+AT
Sbjct: 2   SLKASPMKLALVFIVSIAILAASATAGRT---VVSSTTLDPSISQDLSFFSCTPFILDAT 61

Query: 62  MCVADIIKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 109
           +C+ D+ KFPI+ HP CCKA FK+NDC P   + I  A ++++K IC
Sbjct: 62  LCLVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDVVKNIC 105

[Close]

BLAST of Tan0022200 vs. NCBI nr
Match: TYK10344.1 (hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 4.4e-15
Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 2   AVKASATKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLI-EDISFKRCAPLILEA 61
           +  AS  +LALVFL+ I +IL+P   A T   +A APS    L+ +D SF  CAP ILEA
Sbjct: 6   STSASTIRLALVFLVCI-VILAPSVTAHT---MAEAPSPLLVLLDQDSSFSNCAPFILEA 65

Query: 62  TMCVADIIKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 109
           TMC+ D+IK P++ HP+CCKA   +NDC P   +HI    +++IKKIC
Sbjct: 66  TMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHI--PGMDVIKKIC 107

[Close]

BLAST of Tan0022200 vs. ExPASy TrEMBL
Match: A0A5A7U9A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00160 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.8e-19
Identity = 56/107 (52.34%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 2   AVKASATKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLIEDISFKRCAPLILEAT 61
           ++  SA KL LVFL+ IAI+    TMA TTAA A +PS P    ++  F +CAP ILEAT
Sbjct: 5   SLNVSAMKLVLVFLVCIAILAPSTTMADTTAA-APSPSVP----QNFPFLKCAPFILEAT 64

Query: 62  MCVADIIKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 109
           +CV D+IKFPI+ HP+CCKA  K+NDC P   + I    +++IKKIC
Sbjct: 65  LCVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKIC 106

[Close]

BLAST of Tan0022200 vs. ExPASy TrEMBL
Match: A0A5D3CGK9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00080 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.9e-17
Identity = 52/100 (52.00%), Postives = 68/100 (68.00%), Query Frame = 0


Query: 9   KLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLIEDISFKRCAPLILEATMCVADII 68
           KL LVFL+ IAI+    TMA TTAA A +PS P    ++  F +CAP ILEAT+CV  +I
Sbjct: 2   KLVLVFLVCIAILAPSTTMAGTTAA-APSPSVP----QNFPFLKCAPFILEATLCVTGVI 61

Query: 69  KFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 109
           KFPI+ HP+CCKA  K+ DC P+  + I  + +N+IKK C
Sbjct: 62  KFPIAPHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTC 96

[Close]

BLAST of Tan0022200 vs. ExPASy TrEMBL
Match: A0A5A7U2L3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00060 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 48/107 (44.86%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 2   AVKASATKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLIEDISFKRCAPLILEAT 61
           ++KAS  K A VF++ IAI+ +  T  +T ++    P    S+ +++SF  CAP I + T
Sbjct: 5   SLKASPIKSASVFIVSIAILAASVTAGRTVSSTTLDP----SMSQNLSFFSCAPFIFDVT 64

Query: 62  MCVADIIKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 109
           +C+ D+ KFPIS HP CCKA FK+NDC P   + I PA +++IKKIC
Sbjct: 65  LCLVDVFKFPISPHPLCCKAIFKLNDCAPVVFQTIPPADMDVIKKIC 107

[Close]

BLAST of Tan0022200 vs. ExPASy TrEMBL
Match: A0A0A0LTD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.3e-16
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 2   AVKASATKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLI--EDISFKRCAPLILE 61
           +  AS  +LA+VFL+ I +IL+P   A+T   +A APS    L   +D SF  CAP ILE
Sbjct: 6   STSASTIRLAIVFLVCI-VILAPSVTART---MAEAPSPVLVLFDEDDSSFSNCAPFILE 65

Query: 62  ATMCVADIIKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 109
           ATMCV D+IK P++SHP+CCKA   +NDC P   +HI    +++IKKIC
Sbjct: 66  ATMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHI--PDMDVIKKIC 108

[Close]

BLAST of Tan0022200 vs. ExPASy TrEMBL
Match: A0A5D3CGL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00200 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.1e-15
Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 2   AVKASATKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLI-EDISFKRCAPLILEA 61
           +  AS  +LALVFL+ I +IL+P   A T   +A APS    L+ +D SF  CAP ILEA
Sbjct: 6   STSASTIRLALVFLVCI-VILAPSVTAHT---MAEAPSPLLVLLDQDSSFSNCAPFILEA 65

Query: 62  TMCVADIIKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 109
           TMC+ D+IK P++ HP+CCKA   +NDC P   +HI    +++IKKIC
Sbjct: 66  TMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHI--PGMDVIKKIC 107

The following BLAST results are available for this feature:

BLAST of Tan0022200 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0022200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050069.1	3.8e-19	52.34	hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK1034...	[more]
TYK10334.1	6.1e-17	52.00	hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa]	[more]
KAA0050072.1	3.0e-16	44.86	hypothetical protein E6C27_scaffold675G00540 [Cucumis melo var. makuwa] >TYK1033...	[more]
KAE8653023.1	3.0e-16	43.93	hypothetical protein Csa_023561, partial [Cucumis sativus]	[more]
TYK10344.1	4.4e-15	49.07	hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa]	[more]

BLAST of Tan0022200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U9A1	1.8e-19	52.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CGK9	2.9e-17	52.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U2L3	1.5e-16	44.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LTD6	4.3e-16	49.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1	[more]
A0A5D3CGL7	2.1e-15	49.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Tan0022200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 53..109 e-value: 3.7E-4 score: 20.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0022200.1	Tan0022200.1	mRNA