Tan0022189 (gene) Snake gourd v1

Overview


Name	Tan0022189
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	cyclin-dependent protein kinase inhibitor SMR4
Location	LG08: 72209248 .. 72210455 (+)
RNA-Seq Expression	Tan0022189
Synteny	Tan0022189

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGTAGATGATTCAAACTTTTGACACATGCTCTATGCTAGTTGAACTATCTTCATGCTGATTAAAAATGGAAAGTTAACAATCTAGTGGACATAAAGTTTTTTACATATTTATTTTAGTCTAACAATGCAAGAGTGAGAGATCAAACTATCGACCATTAGGATCATAATTGATGTCTTGTCTAATTAGCTATATTAAACCTATTTGACATAAAGTTAAAAACCTATTACGTACACATTTAAAAGTTTATGGGCCGAATTTATTAAACGATTAGAAAAATTCTACCTTCATATCTCTTACTAAAGGATAGATATGTATTTTAAGTAGTTAGGTTTTACCCATTTTTTTAAGGGGGAAAAAACAAACTTATTAGGCACAGCTAAAAAGTTTAGAGTTTATTATATAGTTTCTAGATGAGCTGAAAATTCAAAAGAATAAGGAAAAGACAGAAAGACCCAGTCAACAATTGACTTCCACTTCTTCCTTAGCTGTCTCCCACATTCACGCCACTCCCCGCCATTCATTTACCTTTCTCTCACACACCAAAATTTCAAATCCCGCCACCTTCAATTCCTCCTCCTCCCCCACCGTCCACGGCGGCGACATCTTCTCACAAACACAACCAAATAAAAGCTCTGTTTTCAAAAAACCAGAGCCTTTTGTCATTTCTCTGACAATGGAGGCCAAACAGGGGACTGCGACAGCATATTACGAGGAAGAGTGTTCGACGCCGACCCGGTGGGAGTGCCGGATCCCGGCGGATCTCAACTGTCCACCGCCGCCGAAGAAGAAGAACGCCGGAACTAATGGGAAGAAGCGGGACCCACCTAAACATGGCTATTTTCAACCTCCTGATCTTGAGGCTCTGTTTTCAGTTCCTCCCAGAAGGGAAGCCTGTGTTTAGTTTAGGCTCTGTTTTAGGGGTGTTTTTTTTTTTTTTTGCCTGATTAGATTGTTCTATTTAATTGTGTATAAATTTTAGGGGGTTGTTGCTTTTGAGTGGGTTATTGAAGTTCTAATGGAATTAAAAACAGAGAGTGGATTAGGATTCTTTAGTTCGCCATTGAAGAGAGTTTCTTCTGAGCCTGAAATGGTGGAATCTTAGGTGAAATATTTAGTACCTTGTACTTTGTTTCTCTTGACGTTTGCATGAATTTATGATGTTTGATTCAAGGAATGATAATTTGATTAATGTGTTTGGTTA

mRNA sequence

ATGGGAGCTGTCTCCCACATTCACGCCACTCCCCGCCATTCATTTACCTTTCTCTCACACACCAAAATTTCAAATCCCGCCACCTTCAATTCCTCCTCCTCCCCCACCGTCCACGGCGGCGACATCTTCTCACAAACACAACCAAATAAAAGCTCTGTTTTCAAAAAACCAGAGCCTTTTGTCATTTCTCTGACAATGGAGGCCAAACAGGGGACTGCGACAGCATATTACGAGGAAGAGTGTTCGACGCCGACCCGGTGGGAGTGCCGGATCCCGGCGGATCTCAACTGTCCACCGCCGCCGAAGAAGAAGAACGCCGGAACTAATGGGAAGAAGCGGGACCCACCTAAACATGGCTATTTTCAACCTCCTGATCTTGAGGCTCTGTTTTCAGTTCCTCCCAGAAGGGAAGCCTGTGTTTAGTTTAGGCTCTGTTTTAGGGGTGTTTTTTTTTTTTTTTGCCTGATTAGATTGTTCTATTTAATTGTGTATAAATTTTAGGGGGTTGTTGCTTTTGAGTGGGTTATTGAAGTTCTAATGGAATTAAAAACAGAGAGTGGATTAGGATTCTTTAGTTCGCCATTGAAGAGAGTTTCTTCTGAGCCTGAAATGGTGGAATCTTAGGTGAAATATTTAGTACCTTGTACTTTGTTTCTCTTGACGTTTGCATGAATTTATGATGTTTGATTCAAGGAATGATAATTTGATTAATGTGTTTGGTTA

Coding sequence (CDS)

ATGGGAGCTGTCTCCCACATTCACGCCACTCCCCGCCATTCATTTACCTTTCTCTCACACACCAAAATTTCAAATCCCGCCACCTTCAATTCCTCCTCCTCCCCCACCGTCCACGGCGGCGACATCTTCTCACAAACACAACCAAATAAAAGCTCTGTTTTCAAAAAACCAGAGCCTTTTGTCATTTCTCTGACAATGGAGGCCAAACAGGGGACTGCGACAGCATATTACGAGGAAGAGTGTTCGACGCCGACCCGGTGGGAGTGCCGGATCCCGGCGGATCTCAACTGTCCACCGCCGCCGAAGAAGAAGAACGCCGGAACTAATGGGAAGAAGCGGGACCCACCTAAACATGGCTATTTTCAACCTCCTGATCTTGAGGCTCTGTTTTCAGTTCCTCCCAGAAGGGAAGCCTGTGTTTAG

Protein sequence

MGAVSHIHATPRHSFTFLSHTKISNPATFNSSSSPTVHGGDIFSQTQPNKSSVFKKPEPFVISLTMEAKQGTATAYYEEECSTPTRWECRIPADLNCPPPPKKKNAGTNGKKRDPPKHGYFQPPDLEALFSVPPRREACV

Homology

[Close]

BLAST of Tan0022189 vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.1e-13
Identity = 38/66 (57.58%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 74  TAYYEEECSTPTRWECRIPADLNCPPPPKKKNAGTNGKKRDPPKHGYFQPPDLEALFSVP 133
           T   EE C+TP     RIP    CPPPP+KK      +KRDPP++GYFQPPDLE LF   
Sbjct: 8   TEMAEEGCTTPRSTMYRIPVASVCPPPPRKKLMVV--RKRDPPRNGYFQPPDLETLFYAQ 67

Query: 134 PRREAC 140
           PRREAC
Sbjct: 68  PRREAC 71

[Close]

BLAST of Tan0022189 vs. ExPASy Swiss-Prot
Match: Q9LNX4 (Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 GN=SMR5 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.0e-12
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 77  YEEECSTPTRWECRIPADLNCPPPPKKKNAGTN-GKKRDPPKHGYFQPPDLEALFSVPPR 136
           Y+  C+TPTR +CRIPA   CPPP ++K +    GKKR+PPK GYFQPPDL+  FSV   
Sbjct: 18  YQMGCTTPTRDDCRIPAYPPCPPPVRRKRSLLGFGKKREPPKKGYFQPPDLDLFFSVVAA 77

Query: 137 REA 139
            +A
Sbjct: 78  SQA 80

[Close]

BLAST of Tan0022189 vs. NCBI nr
Match: XP_038905412.1 (cyclin-dependent protein kinase inhibitor SMR4 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 2.6e-28
Identity = 65/74 (87.84%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 66  MEAKQGTATAYYEEECSTPTRWECRIPADLNCPPPPKKKNAGTNGKKRDPPKHGYFQPPD 125
           MEAKQG A   YEEECSTPTRWECRIPA  NCPPPPKKK  GT+GKKRDPPKHGYFQPPD
Sbjct: 1   MEAKQGPAN--YEEECSTPTRWECRIPAVFNCPPPPKKK-IGTDGKKRDPPKHGYFQPPD 60

Query: 126 LEALFSVPPRREAC 140
           LEALFSVPPRREAC
Sbjct: 61  LEALFSVPPRREAC 71

[Close]

BLAST of Tan0022189 vs. NCBI nr
Match: XP_031737830.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cucumis sativus] >KAE8651008.1 hypothetical protein Csa_002137 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-27
Identity = 62/74 (83.78%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 66  MEAKQGTATAYYEEECSTPTRWECRIPADLNCPPPPKKKNAGTNGKKRDPPKHGYFQPPD 125
           M++KQGT    YEEECSTPTRWECRIPA  NCPPPPKKKNA T GKKR+PPKHGYFQPPD
Sbjct: 1   MDSKQGTGN--YEEECSTPTRWECRIPAVFNCPPPPKKKNA-TAGKKREPPKHGYFQPPD 60

Query: 126 LEALFSVPPRREAC 140
           LEALFS+PPRREAC
Sbjct: 61  LEALFSIPPRREAC 71

[Close]

BLAST of Tan0022189 vs. NCBI nr
Match: XP_023528630.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.5 bits (332), Expect = 2.8e-27
Identity = 64/77 (83.12%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 66  MEAKQGTATAYYEEECSTPTRWECRIPADLNC--PPPPKKKNAGTNGKKRDPPKHGYFQP 125
           MEAKQG A   YEEECSTPTRWECRIPA  NC  PPPPKKK A ++GKKR+PPKHGYFQP
Sbjct: 1   MEAKQGPAN--YEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQP 60

Query: 126 PDLEALFSVPPRREACV 141
           PDLEALFSVPPRREACV
Sbjct: 61  PDLEALFSVPPRREACV 75

[Close]

BLAST of Tan0022189 vs. NCBI nr
Match: KAG6580535.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017288.1 Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.7 bits (330), Expect = 4.8e-27
Identity = 64/77 (83.12%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 66  MEAKQGTATAYYEEECSTPTRWECRIPADLNC--PPPPKKKNAGTNGKKRDPPKHGYFQP 125
           MEAKQG A   YEEECSTPTRWECRIPA  NC  PPPPKKK A ++GKKR+PPKHGYFQP
Sbjct: 1   MEAKQGPAN--YEEECSTPTRWECRIPAVSNCPPPPPPKKKKAVSSGKKREPPKHGYFQP 60

Query: 126 PDLEALFSVPPRREACV 141
           PDLEALFSVPPRREACV
Sbjct: 61  PDLEALFSVPPRREACV 75

[Close]

BLAST of Tan0022189 vs. NCBI nr
Match: XP_022983341.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita maxima])

HSP 1 Score: 131.3 bits (329), Expect = 6.3e-27
Identity = 64/77 (83.12%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 66  MEAKQGTATAYYEEECSTPTRWECRIPADLNC--PPPPKKKNAGTNGKKRDPPKHGYFQP 125
           MEAKQG A   YEEECSTPTRWECRIPA  NC  PPPPKKK A  +GKKR+PPKHGYFQP
Sbjct: 1   MEAKQGPAN--YEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVGSGKKREPPKHGYFQP 60

Query: 126 PDLEALFSVPPRREACV 141
           PDLEALFSVPPRREACV
Sbjct: 61  PDLEALFSVPPRREACV 75

[Close]

BLAST of Tan0022189 vs. ExPASy TrEMBL
Match: A0A0A0LAJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734160 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 6.4e-33
Identity = 91/151 (60.26%), Postives = 99/151 (65.56%), Query Frame = 0


Query: 3   AVSHIHATPRHSFTFL---SHTKISNPATFNSSSSP-------TVHGGDIFSQTQPN--- 62
           AVSHI ATPRHSF FL    HT   N +  NS S P       TVH   +F  +  +   
Sbjct: 12  AVSHIDATPRHSFIFLFLFKHT--PNFSKSNSHSPPPPLLLLATVHARALFVVSNFHYLL 71

Query: 63  -KSSVFKKPEPFVISLTMEAKQGTATAYYEEECSTPTRWECRIPADLNCPPPPKKKNAGT 122
            K           ISL M++KQGT    YEEECSTPTRWECRIPA  NCPPPPKKKNA T
Sbjct: 72  LKLYSINLYLLLFISLAMDSKQGTGN--YEEECSTPTRWECRIPAVFNCPPPPKKKNA-T 131

Query: 123 NGKKRDPPKHGYFQPPDLEALFSVPPRREAC 140
            GKKR+PPKHGYFQPPDLEALFS+PPRREAC
Sbjct: 132 AGKKREPPKHGYFQPPDLEALFSIPPRREAC 157

[Close]

BLAST of Tan0022189 vs. ExPASy TrEMBL
Match: A0A6J1J1Y0 (cyclin-dependent protein kinase inhibitor SMR4 OS=Cucurbita maxima OX=3661 GN=LOC111481954 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.1e-27
Identity = 64/77 (83.12%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 66  MEAKQGTATAYYEEECSTPTRWECRIPADLNC--PPPPKKKNAGTNGKKRDPPKHGYFQP 125
           MEAKQG A   YEEECSTPTRWECRIPA  NC  PPPPKKK A  +GKKR+PPKHGYFQP
Sbjct: 1   MEAKQGPAN--YEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVGSGKKREPPKHGYFQP 60

Query: 126 PDLEALFSVPPRREACV 141
           PDLEALFSVPPRREACV
Sbjct: 61  PDLEALFSVPPRREACV 75

[Close]

BLAST of Tan0022189 vs. ExPASy TrEMBL
Match: A0A7N2M7Y9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-15
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 78  EEECSTPTRWECRIPADLNCPPPPKKKNAGTNGKKRDPPKHGYFQPPDLEALFSVPPRRE 137
           E+ CSTP R EC+IP  + CPPPPKKK+A  +G KRDPPK+GYFQPPDL+A+F++PPRRE
Sbjct: 8   EDRCSTPKRRECQIPVVVVCPPPPKKKSA--SGMKRDPPKNGYFQPPDLDAIFTMPPRRE 66

Query: 138 A 139
           A
Sbjct: 68  A 66

[Close]

BLAST of Tan0022189 vs. ExPASy TrEMBL
Match: A0A6P5TDY5 (cyclin-dependent protein kinase inhibitor SMR4 OS=Prunus avium OX=42229 GN=LOC110766532 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.7e-15
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 78  EEECSTPTRWECRIPADLNCPPPPKKKNAGTNGKKRDPPKHGYFQPPDLEALFSVPPRRE 137
           +E+C+TP R EC+IP  L CPPPPKKK AG    +RDPPK+GYFQPPDL+ALF++PPR +
Sbjct: 2   DEDCATPKRRECQIPEMLLCPPPPKKKAAGET--QRDPPKNGYFQPPDLDALFALPPRTQ 61

Query: 138 AC 140
           AC
Sbjct: 62  AC 61

[Close]

BLAST of Tan0022189 vs. ExPASy TrEMBL
Match: W1PJM4 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00012p00245380 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 6.0e-15
Identity = 39/61 (63.93%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 79  EECSTPTRWECRIPADLNCPPPPKKKNAGTNGKKRDPPKHGYFQPPDLEALFSVPPRREA 138
           E C TP    CRIP++  CPPPPKKK A + GK+RDPP  GYF PPDLEALF+V PR E 
Sbjct: 9   EGCETPKHSNCRIPSEFRCPPPPKKKTAASFGKRRDPPPSGYFHPPDLEALFAVGPRHET 68

Query: 139 C 140
           C
Sbjct: 69  C 69

[Close]

BLAST of Tan0022189 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 2.9e-14
Identity = 38/66 (57.58%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 74  TAYYEEECSTPTRWECRIPADLNCPPPPKKKNAGTNGKKRDPPKHGYFQPPDLEALFSVP 133
           T   EE C+TP     RIP    CPPPP+KK      +KRDPP++GYFQPPDLE LF   
Sbjct: 8   TEMAEEGCTTPRSTMYRIPVASVCPPPPRKKLMVV--RKRDPPRNGYFQPPDLETLFYAQ 67

Query: 134 PRREAC 140
           PRREAC
Sbjct: 68  PRREAC 71

The following BLAST results are available for this feature:

BLAST of Tan0022189 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1JPP8	4.1e-13	57.58	Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LNX4	6.0e-12	55.56	Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Tan0022189 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905412.1	2.6e-28	87.84	cyclin-dependent protein kinase inhibitor SMR4 [Benincasa hispida]	[more]
XP_031737830.1	2.2e-27	83.78	cyclin-dependent protein kinase inhibitor SMR4 [Cucumis sativus] >KAE8651008.1 h...	[more]
XP_023528630.1	2.8e-27	83.12	cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita pepo subsp. pepo]	[more]
KAG6580535.1	4.8e-27	83.12	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]
XP_022983341.1	6.3e-27	83.12	cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita maxima]	[more]

BLAST of Tan0022189 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAJ2	6.4e-33	60.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734160 PE=4 SV=1	[more]
A0A6J1J1Y0	3.1e-27	83.12	cyclin-dependent protein kinase inhibitor SMR4 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A7N2M7Y9	1.2e-15	68.85	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6P5TDY5	2.7e-15	66.13	cyclin-dependent protein kinase inhibitor SMR4 OS=Prunus avium OX=42229 GN=LOC11...	[more]
W1PJM4	6.0e-15	63.93	Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00012p00245380...	[more]

BLAST of Tan0022189 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02220.1	2.9e-14	57.58	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..127
None	No IPR available	PANTHER	PTHR33142:SF15	OS01G0843700 PROTEIN	coord: 60..138
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 60..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0022189.1	Tan0022189.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus