Tan0022082 (gene) Snake gourd v1

Overview
NameTan0022082
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGlycos_transf_1 domain-containing protein
LocationLG01: 31632417 .. 31635316 (-)
RNA-Seq ExpressionTan0022082
SyntenyTan0022082
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGCTTTCGAAATCCCCATCTCCCTCCCGTACTCTCCCTCCCTAAACCTTCACCCATCATTCCCTGCGAATCTCTCTTGCAATTTTTCTAAGAATAATTTCTCAGAAATAATTGAAGGATCCCTCGCGAATCTCTAAAAAATAATCGAAGGCTTCATCGTGTCAATCTCTCAGTAGGCTCCCTTGCGAATCTCTCTCGCGATTTTTCATCTTCTCAGTGTAGTAGAAATAGAAGGGTTTTCATTTAGTTGTTCCAATCGATCTCCCCAGTGATTGTAGTTAGGTTTTTCGACCATTTGACGACTCTTCATAAGGAGAACAAGATGCTTTGTTCATGAGATGGTGTTCACTGACCATTCGACGACTCTTCAACCATTCGACATTCCTTTCACCATTCAACGACTCTTCATCATTTTAGTATGCGAGACACACTACTTTCATTCACTCTTCGACTAAAAACTCTCCTTCTTTTACATCTCTCAGCAAAATAATTCTTTCAGGTTTGTTTATTGCTTGTTTCGATATATGTAGGAGTAATTTTGTTGAAATTTTGAGTTTAATATGATGATTTGAGATGAATTTTACTTTGTTGAACTTGGGTCAATCTGTTTCACACAGATTTATGATTTTTTTCCTTTAAAAGAAGCTAAATAACTATGTGGTGTTATAGTTTAGAGGATTTTAATTTGTCTTCTTCTGGAAAACAGAGAATTCCAATAAATTGAAAGAAAAATGGAGGTCATTTCTAATGACTTTGAACTTTGCCCACCATCTGTTCGATGAAATGCAAATATTTTTCGGTGAAATTTGGTTTTTCTACAGAGTTTCTGGGTTATGAGATGTGGATGATCCAAGTTGTTGTACAAGAAATTAACAAGTGGATTTTTTGCTTTTACCTTTTGTTTTAGAGTTTTTTCTTGGGTTTAAGAGACAATTGTAAGTTTCTAATCGAAGATTGGAAATGTTGTAACTTTCCCAAATTTGGAGCTCCGAGTAGCTTAAAAACTAAGTTCATTTACAGGACAAAAATAGGTCTAGCAGAAATGGGTAAGCTTAATTCATTTGAAAGATGAATGTTATGTTTTTGTTGAATTCTGCGTGGAGGAAAAATGGATCCAATGAGGCTATAAAAAAATGAGCTCCTGTGTTTCAAACCCTACATATCAATGGTTGCCTTTTTTGGTTGGCAGTATAATATAACATCTCTTTTTCTTTAGTATTTTGGATAGTTCATGTAATTCTAGAAGAAATGAGATGATATAAAGAAAATTATAACATTTGATTTTTATTTGTTCTTCTATATATATGCTTTAATTTTTCTTGGTCGAGGAAGCTTCATTATATACTTGAAAGTTGTTAAAAGAGAAATGCAAGAGACTCTCATGTTCTTGCATGTTCTTTTCTACACTTCTCTATTATTTGTTATGCTTTTGCTTAAGTGACAGATTCAACCCCTTCACCTTTTCCTCCAGGAATGTTCTAATCGATCCTTTTTTCAGCTTTCCCACTTCCCAAACACTAAATCTTCACTAAGGTATGCACCCATTCATCTCTTTCTCTAAATAACAAGTAGAATTTCCATCTAATTTGTGCTAATTATAATTCTAATTTTATGTGTGTTGGCCAATTGGGCAGAAATATTTACAATATTGATGTGATGTGAAGTTTTCATTTTAGTACTTAGTTATTTTCTATCTCATATTCTGGTCTTTATTATATGTTTACTTAATTCCTAATTTTTATATGAAGAAAAGTTGTACAAAGAGGCTTGATGGGAGCACAATTGACATAGGATAAAATCTCAGCCTGAATCCTTGTTTATGAGTTCAATGGATTTTCTTATCAAATTGCAAAGGTTAGTGAGTGTTTTGTTTTGAAATTTACTATAGAAATGTTTGTCTCATGGGTGTTTGTGACCTTTTTTGTGCAACTAATCTTGTCAAGTCCCACATTTCATCTCAGAAAAACCCTTTACTATGATATATTAATTCCCAAGTGATCTATTTTTGAAGAATCACTCATGTAAAAGCATAAGTAGTTGCATTATCCATATAGCTCAGTGAACTTAAGTTGTGACATCTTAGATTTTTTTTGAAATCATCACTCTTTATCAAAGATAGTGCTTGTAATAATTTTTAATCTAGTTATATGGTAATTCAGGCAAAAATTCATTGTGGATCGAATAAACTAATTAGAATATTCTCACTCTATTAGCAAATTGAAATGAATCTTTCCTTGATGTAGATATCTTTCCTGATGTAGAAACCCAAGAACATTTCTTACATCTTCTCTTTTGTATACTGATCTTGAAAATGTTACAGGGACTAGGTGAAACATTTGGAAGAGTAACTATTGAAGCAATGCCATTTGGTCTTCCGGTATGAAATTCTACTGTACTAGTCTTTTCTATTTATGCTGGTCTCATAAGAGTAATGTTTCTCTGTTGTTTCTTCTATTGAATTCCAAATTGTGGTTGCATCGATTCATGTCTAGGGCAACCCCTGCCCCAAAACCGATGCTAGAGGTCCTCGGGACCGATGTTGAAGGAATGAAGGAGATTGTCGACCACAAAGTGACTTGTCTTCTTCATCTTTTGGGGTGCCCAGGTACTAAAGTTTTGCACAAAACTTGCAGTATATCTACTAAAAACCCCACATGTAAGAGAGCAAATGGGAGCTGAAGGAAGAAAGAAGGTAAAGAAAATGTACTTAAAGCGGCACATGTACAAAAAATTCGTAGAGGTCATTGTAAAGTGTATGAGAACAAAGTAATTATCTAGGTAGCATTTGAGATTTTCTCATTCTTTTATTGCTTGTAATATTGAAGAATTTGAGCAACTTATTGGCCACGGTTGATTACTCTGAAGAATAAATAACATAGTATCTTTGATTCCTCCAAAAA

mRNA sequence

GGGCTTTCGAAATCCCCATCTCCCTCCCGTACTCTCCCTCCCTAAACCTTCACCCATCATTCCCTGCGAATCTCTCTTGCAATTTTTCTAAGAATAATTTCTCAGAAATAATTGAAGGATCCCTCGCGAATCTCTAAAAAATAATCGAAGGCTTCATCGTGTCAATCTCTCAGTAGGCTCCCTTGCGAATCTCTCTCGCGATTTTTCATCTTCTCAGTGTAGTAGAAATAGAAGGGTTTTCATTTAGTTGTTCCAATCGATCTCCCCAGTGATTGTAGTTAGGTTTTTCGACCATTTGACGACTCTTCATAAGGAGAACAAGATGCTTTGTTCATGAGATGGTGTTCACTGACCATTCGACGACTCTTCAACCATTCGACATTCCTTTCACCATTCAACGACTCTTCATCATTTTAGAATGTTCTAATCGATCCTTTTTTCAGCTTTCCCACTTCCCAAACACTAAATCTTCACTAAGAAAAGTTGTACAAAGAGGCTTGATGGGAGCACAATTGACATAGGATAAAATCTCAGCCTGAATCCTTGTTTATGAGTTCAATGGATTTTCTTATCAAATTGCAAAGGGACTAGGTGAAACATTTGGAAGAGTAACTATTGAAGCAATGCCATTTGGTCTTCCGGTATGAAATTCTACTGTACTAGTCTTTTCTATTTATGCTGGTCTCATAAGAGTAATGTTTCTCTGTTGTTTCTTCTATTGAATTCCAAATTGTGGTTGCATCGATTCATGTCTAGGGCAACCCCTGCCCCAAAACCGATGCTAGAGGTCCTCGGGACCGATGTTGAAGGAATGAAGGAGATTGTCGACCACAAAGTGACTTGTCTTCTTCATCTTTTGGGGTGCCCAGGTACTAAAGTTTTGCACAAAACTTGCAGTATATCTACTAAAAACCCCACATGTAAGAGAGCAAATGGGAGCTGAAGGAAGAAAGAAGGTAAAGAAAATGTACTTAAAGCGGCACATGTACAAAAAATTCGTAGAGGTCATTGTAAAGTGTATGAGAACAAAGTAATTATCTAGGTAGCATTTGAGATTTTCTCATTCTTTTATTGCTTGTAATATTGAAGAATTTGAGCAACTTATTGGCCACGGTTGATTACTCTGAAGAATAAATAACATAGTATCTTTGATTCCTCCAAAAA

Coding sequence (CDS)

ATGAAATTCTACTGTACTAGTCTTTTCTATTTATGCTGGTCTCATAAGAGTAATGTTTCTCTGTTGTTTCTTCTATTGAATTCCAAATTGTGGTTGCATCGATTCATGTCTAGGGCAACCCCTGCCCCAAAACCGATGCTAGAGGTCCTCGGGACCGATGTTGAAGGAATGAAGGAGATTGTCGACCACAAAGTGACTTGTCTTCTTCATCTTTTGGGGTGCCCAGGTACTAAAGTTTTGCACAAAACTTGCAGTATATCTACTAAAAACCCCACATGTAAGAGAGCAAATGGGAGCTGA

Protein sequence

MKFYCTSLFYLCWSHKSNVSLLFLLLNSKLWLHRFMSRATPAPKPMLEVLGTDVEGMKEIVDHKVTCLLHLLGCPGTKVLHKTCSISTKNPTCKRANGS
Homology
[Close]
BLAST of Tan0022082 vs. NCBI nr
Match: XP_004302927.1 (PREDICTED: uncharacterized protein LOC101300160 [Fragaria vesca subsp. vesca])

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-05
Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 47  LEVLGTDVEGMKEIVDHKVTCLLHLLGCPGTKVLHKTCSISTKNPTCKRANG 99
           L VLGTD  G KEIVDH VT LLH LG PGT+VL K   +  KNP  ++  G
Sbjct: 638 LPVLGTDAGGTKEIVDHNVTGLLHPLGHPGTQVLAKNLRLLLKNPELRKQMG 689

[Close]
BLAST of Tan0022082 vs. NCBI nr
Match: XP_040969377.1 (uncharacterized protein LOC107944312 [Gossypium hirsutum] >XP_040969378.1 uncharacterized protein LOC107944312 [Gossypium hirsutum] >XP_040969379.1 uncharacterized protein LOC107944312 [Gossypium hirsutum] >XP_040969380.1 uncharacterized protein LOC107944312 [Gossypium hirsutum] >XP_040969381.1 uncharacterized protein LOC107944312 [Gossypium hirsutum] >XP_040969382.1 uncharacterized protein LOC107944312 [Gossypium hirsutum] >KAG4199096.1 hypothetical protein ERO13_A05G127500v2 [Gossypium hirsutum] >KAG4199097.1 hypothetical protein ERO13_A05G127500v2 [Gossypium hirsutum] >KAG4199098.1 hypothetical protein ERO13_A05G127500v2 [Gossypium hirsutum] >KAG4199099.1 hypothetical protein ERO13_A05G127500v2 [Gossypium hirsutum])

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-04
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 47  LEVLGTDVEGMKEIVDHKVTCLLHLLGCPGTKVLHKTCSISTKNPTCKRANG 99
           L VLGTD  G KEIVDH VT LLH +G PGT+VL +      KNP+ ++  G
Sbjct: 604 LPVLGTDAGGTKEIVDHNVTGLLHPMGHPGTQVLAENLRFLLKNPSARKQMG 655

[Close]
BLAST of Tan0022082 vs. NCBI nr
Match: XP_012444173.1 (PREDICTED: uncharacterized protein LOC105768657 [Gossypium raimondii] >XP_012444174.1 PREDICTED: uncharacterized protein LOC105768657 [Gossypium raimondii] >XP_012444175.1 PREDICTED: uncharacterized protein LOC105768657 [Gossypium raimondii] >XP_012444176.1 PREDICTED: uncharacterized protein LOC105768657 [Gossypium raimondii] >KJB56694.1 hypothetical protein B456_009G132600 [Gossypium raimondii] >KJB56695.1 hypothetical protein B456_009G132600 [Gossypium raimondii] >KJB56696.1 hypothetical protein B456_009G132600 [Gossypium raimondii] >KJB56697.1 hypothetical protein B456_009G132600 [Gossypium raimondii])

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-04
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 47  LEVLGTDVEGMKEIVDHKVTCLLHLLGCPGTKVLHKTCSISTKNPTCKRANG 99
           L VLGTD  G KEIVDH VT LLH +G PGT+VL +      KNP+ ++  G
Sbjct: 604 LPVLGTDAGGTKEIVDHNVTGLLHPMGHPGTQVLAENLRFFLKNPSARKQMG 655

[Close]
BLAST of Tan0022082 vs. NCBI nr
Match: MBA0623040.1 (hypothetical protein [Gossypium davidsonii] >MBA0658583.1 hypothetical protein [Gossypium klotzschianum])

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-04
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 47  LEVLGTDVEGMKEIVDHKVTCLLHLLGCPGTKVLHKTCSISTKNPTCKRANG 99
           L VLGTD  G KEIVDH VT LLH +G PGT+VL +      KNP+ ++  G
Sbjct: 622 LPVLGTDAGGTKEIVDHNVTGLLHPMGHPGTQVLAENLRFLLKNPSARKQMG 673

[Close]
BLAST of Tan0022082 vs. NCBI nr
Match: TYG68224.1 (hypothetical protein ES288_D05G137100v1 [Gossypium darwinii])

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-04
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 47  LEVLGTDVEGMKEIVDHKVTCLLHLLGCPGTKVLHKTCSISTKNPTCKRANG 99
           L VLGTD  G KEIVDH VT LLH +G PGT+VL +      KNP+ ++  G
Sbjct: 440 LPVLGTDAGGTKEIVDHNVTGLLHPMGHPGTQVLAENLRFLLKNPSARKQMG 491

[Close]
BLAST of Tan0022082 vs. ExPASy TrEMBL
Match: A0A1U8JFB0 (uncharacterized protein LOC107906502 OS=Gossypium hirsutum OX=3635 GN=LOC107906502 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 47  LEVLGTDVEGMKEIVDHKVTCLLHLLGCPGTKVLHKTCSISTKNPTCKRANG 99
           L VLGTD  G KEIVDH VT LLH +G PGT+VL +      KNP+ ++  G
Sbjct: 604 LPVLGTDAGGTKEIVDHNVTGLLHPMGHPGTQVLAENLRFLLKNPSARKQMG 655

[Close]
BLAST of Tan0022082 vs. ExPASy TrEMBL
Match: A0A6P4M9E2 (uncharacterized protein LOC108452970 OS=Gossypium arboreum OX=29729 GN=LOC108452970 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 47  LEVLGTDVEGMKEIVDHKVTCLLHLLGCPGTKVLHKTCSISTKNPTCKRANG 99
           L VLGTD  G KEIVDH VT LLH +G PGT+VL +      KNP+ ++  G
Sbjct: 604 LPVLGTDAGGTKEIVDHNVTGLLHPMGHPGTQVLAENLRFLLKNPSARKQMG 655

[Close]
BLAST of Tan0022082 vs. ExPASy TrEMBL
Match: A0A5J5VPI6 (Glycos_transf_1 domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A05G133100v1 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 47  LEVLGTDVEGMKEIVDHKVTCLLHLLGCPGTKVLHKTCSISTKNPTCKRANG 99
           L VLGTD  G KEIVDH VT LLH +G PGT+VL +      KNP+ ++  G
Sbjct: 604 LPVLGTDAGGTKEIVDHNVTGLLHPMGHPGTQVLAENLRFLLKNPSARKQMG 655

[Close]
BLAST of Tan0022082 vs. ExPASy TrEMBL
Match: A0A5J5RCX0 (Glycos_transf_1 domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_D05G131200v1 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 47  LEVLGTDVEGMKEIVDHKVTCLLHLLGCPGTKVLHKTCSISTKNPTCKRANG 99
           L VLGTD  G KEIVDH VT LLH +G PGT+VL +      KNP+ ++  G
Sbjct: 604 LPVLGTDAGGTKEIVDHNVTGLLHPMGHPGTQVLAENLRFLLKNPSARKQMG 655

[Close]
BLAST of Tan0022082 vs. ExPASy TrEMBL
Match: A0A5D2Z8W3 (Glycos_transf_1 domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A05G135400v1 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 47  LEVLGTDVEGMKEIVDHKVTCLLHLLGCPGTKVLHKTCSISTKNPTCKRANG 99
           L VLGTD  G KEIVDH VT LLH +G PGT+VL +      KNP+ ++  G
Sbjct: 604 LPVLGTDAGGTKEIVDHNVTGLLHPMGHPGTQVLAENLRFLLKNPSARKQMG 655

[Close]
BLAST of Tan0022082 vs. TAIR 10
Match: AT3G15940.1 (UDP-Glycosyltransferase superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 3.5e-06
Identity = 26/53 (49.06%), Postives = 32/53 (60.38%), Query Frame = 0 

Query: 47  LEVLGTDVEGMKEIVDHKVTCLLHLLGCPGTKVLHKTCSISTKNPTCKRANGS 100
           L VLGTD  G KEIV+H VT LLH +G  G KVL +      +NP+ +   GS
Sbjct: 616 LPVLGTDAGGTKEIVEHNVTGLLHPVGRAGNKVLAQNLLFLLRNPSTRLQLGS 668

[Close]
BLAST of Tan0022082 vs. TAIR 10
Match: AT3G15940.2 (UDP-Glycosyltransferase superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 3.5e-06
Identity = 26/53 (49.06%), Postives = 32/53 (60.38%), Query Frame = 0 

Query: 47  LEVLGTDVEGMKEIVDHKVTCLLHLLGCPGTKVLHKTCSISTKNPTCKRANGS 100
           L VLGTD  G KEIV+H VT LLH +G  G KVL +      +NP+ +   GS
Sbjct: 616 LPVLGTDAGGTKEIVEHNVTGLLHPVGRAGNKVLAQNLLFLLRNPSTRLQLGS 668

The following BLAST results are available for this feature:
BLAST of Tan0022082 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0022082 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004302927.14.8e-0557.69PREDICTED: uncharacterized protein LOC101300160 [Fragaria vesca subsp. vesca][more]
XP_040969377.11.8e-0453.85uncharacterized protein LOC107944312 [Gossypium hirsutum] >XP_040969378.1 unchar... [more]
XP_012444173.11.8e-0453.85PREDICTED: uncharacterized protein LOC105768657 [Gossypium raimondii] >XP_012444... [more]
MBA0623040.11.8e-0453.85hypothetical protein [Gossypium davidsonii] >MBA0658583.1 hypothetical protein [... [more]
TYG68224.11.8e-0453.85hypothetical protein ES288_D05G137100v1 [Gossypium darwinii][more]
BLAST of Tan0022082 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1U8JFB08.8e-0553.85uncharacterized protein LOC107906502 OS=Gossypium hirsutum OX=3635 GN=LOC1079065... [more]
A0A6P4M9E28.8e-0553.85uncharacterized protein LOC108452970 OS=Gossypium arboreum OX=29729 GN=LOC108452... [more]
A0A5J5VPI68.8e-0553.85Glycos_transf_1 domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES3... [more]
A0A5J5RCX08.8e-0553.85Glycos_transf_1 domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES3... [more]
A0A5D2Z8W38.8e-0553.85Glycos_transf_1 domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1... [more]
BLAST of Tan0022082 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G15940.13.5e-0649.06UDP-Glycosyltransferase superfamily protein [more]
AT3G15940.23.5e-0649.06UDP-Glycosyltransferase superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0022082.1Tan0022082.1mRNA