Tan0022074 (gene) Snake gourd v1

Overview


Name	Tan0022074
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Defensin-like protein
Location	LG09: 51133917 .. 51134292 (-)
RNA-Seq Expression	Tan0022074
Synteny	Tan0022074

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCCATGTCCCTCTCGGCCATTGTCCTTGTGGTTTTGCTCATTTTGAATGGTAACTCTTCTTTTGAATTTATTTTTTTTAAAAAAAAACAATTAAAGAGTTGATAGTGTTTTTAGTGAATACTATTTATACGGTATAAAAATAGAGAAAATTTAAATTAAATTATATAGGATTTTGGTGAATAATGATGCAGGGGAAAGGATGATGATGAGAAGTGTTGAAGGACTATGCGAGAAGGCATTGCATGGGGGAGGTTGCAAATATGACGAGTGTGAGAATGGCTGCAAAGCCCAATTTGGAGCAAACGCAATTGGACTTTGCTTTTTCTTCCGAACACCAAGTGATACTTGTCTCTGTCGTTTTCCTTGTTGA

mRNA sequence

ATGAAGTCCATGTCCCTCTCGGCCATTGTCCTTGTGGTTTTGCTCATTTTGAATGGGGAAAGGATGATGATGAGAAGTGTTGAAGGACTATGCGAGAAGGCATTGCATGGGGGAGGTTGCAAATATGACGAGTGTGAGAATGGCTGCAAAGCCCAATTTGGAGCAAACGCAATTGGACTTTGCTTTTTCTTCCGAACACCAAGTGATACTTGTCTCTGTCGTTTTCCTTGTTGA

Coding sequence (CDS)

ATGAAGTCCATGTCCCTCTCGGCCATTGTCCTTGTGGTTTTGCTCATTTTGAATGGGGAAAGGATGATGATGAGAAGTGTTGAAGGACTATGCGAGAAGGCATTGCATGGGGGAGGTTGCAAATATGACGAGTGTGAGAATGGCTGCAAAGCCCAATTTGGAGCAAACGCAATTGGACTTTGCTTTTTCTTCCGAACACCAAGTGATACTTGTCTCTGTCGTTTTCCTTGTTGA

Protein sequence

MKSMSLSAIVLVVLLILNGERMMMRSVEGLCEKALHGGGCKYDECENGCKAQFGANAIGLCFFFRTPSDTCLCRFPC

Homology

[Close]

BLAST of Tan0022074 vs. NCBI nr
Match: KGN61300.1 (hypothetical protein Csa_006301 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 4.7e-24
Identity = 58/79 (73.42%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 1  MKSMSLSAIVLVVLLILNGERMMMRSV--EGLCEKALHGGGCKYDECENGCKAQFGANAI 60
          MKS+S SAI+L +LL+ +GE +MMRSV  EGLCEKALHGGGCK  EC +GCK  FGA A+
Sbjct: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60

Query: 61 GLCFFFRTPSDTCLCRFPC 78
          GLCFFFRTPSDTCLCR+PC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of Tan0022074 vs. NCBI nr
Match: KAA0040390.1 (Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 8.9e-23
Identity = 57/79 (72.15%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MKSMSLSAIVLVVLLILNGERMM--MRSVEGLCEKALHGGGCKYDECENGCKAQFGANAI 60
          MKS+SLSAI+L +LLI +GE MM  +  V GLCEKALHGGGCK  EC +GCKA FG  A+
Sbjct: 1  MKSVSLSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRFPC 78
          GLCFFFRTPSDTCLCR+PC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of Tan0022074 vs. NCBI nr
Match: KAA0040274.1 (Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 56/79 (70.89%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 1  MKSMSLSAIVLVVLLILNGERMM--MRSVEGLCEKALHGGGCKYDECENGCKAQFGANAI 60
          MKS+S SAI+L +LLI NGE MM  +  V GLC+KALHGGGCK  EC +GCKA FG  A+
Sbjct: 1  MKSVSFSAILLALLLIFNGETMMKSVEGVGGLCQKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRFPC 78
          GLCFFFRTPSDTCLCR+PC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of Tan0022074 vs. NCBI nr
Match: KAA0040398.1 (Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 2.0e-22
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MKSMSLSAIVLVVLLILNGERMM--MRSVEGLCEKALHGGGCKYDECENGCKAQFGANAI 60
          MKS+S+SAI+L +LLI +GE MM  +  V GLCEKALHGGGCK  EC +GCKA FG  A+
Sbjct: 1  MKSVSISAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRFPC 78
          GLCFFFRTPSDTCLCR+PC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of Tan0022074 vs. NCBI nr
Match: TYK27730.1 (Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 2.0e-22
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MKSMSLSAIVLVVLLILNGERMM--MRSVEGLCEKALHGGGCKYDECENGCKAQFGANAI 60
          MKS+S SAI+L +LLI +GE MM  + +V GLCEKALHGGGCK  EC +GCKA FG  A+
Sbjct: 1  MKSISFSAILLALLLIFSGETMMKSVEAVGGLCEKALHGGGCKDAECMSGCKALFGQGAM 60

Query: 61 GLCFFFRTPSDTCLCRFPC 78
          GLCFFFRTPSDTCLCR+PC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of Tan0022074 vs. ExPASy TrEMBL
Match: A0A0A0LH75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G077550 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.3e-24
Identity = 58/79 (73.42%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 1  MKSMSLSAIVLVVLLILNGERMMMRSV--EGLCEKALHGGGCKYDECENGCKAQFGANAI 60
          MKS+S SAI+L +LL+ +GE +MMRSV  EGLCEKALHGGGCK  EC +GCK  FGA A+
Sbjct: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60

Query: 61 GLCFFFRTPSDTCLCRFPC 78
          GLCFFFRTPSDTCLCR+PC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of Tan0022074 vs. ExPASy TrEMBL
Match: A0A5A7TAP6 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00020 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.3e-23
Identity = 57/79 (72.15%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MKSMSLSAIVLVVLLILNGERMM--MRSVEGLCEKALHGGGCKYDECENGCKAQFGANAI 60
          MKS+SLSAI+L +LLI +GE MM  +  V GLCEKALHGGGCK  EC +GCKA FG  A+
Sbjct: 1  MKSVSLSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRFPC 78
          GLCFFFRTPSDTCLCR+PC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of Tan0022074 vs. ExPASy TrEMBL
Match: A0A5A7T9W7 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2379G00030 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 7.3e-23
Identity = 56/79 (70.89%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 1  MKSMSLSAIVLVVLLILNGERMM--MRSVEGLCEKALHGGGCKYDECENGCKAQFGANAI 60
          MKS+S SAI+L +LLI NGE MM  +  V GLC+KALHGGGCK  EC +GCKA FG  A+
Sbjct: 1  MKSVSFSAILLALLLIFNGETMMKSVEGVGGLCQKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRFPC 78
          GLCFFFRTPSDTCLCR+PC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of Tan0022074 vs. ExPASy TrEMBL
Match: A0A5A7TBW2 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00120 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.6e-23
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MKSMSLSAIVLVVLLILNGERMM--MRSVEGLCEKALHGGGCKYDECENGCKAQFGANAI 60
          MKS+S+SAI+L +LLI +GE MM  +  V GLCEKALHGGGCK  EC +GCKA FG  A+
Sbjct: 1  MKSVSISAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRFPC 78
          GLCFFFRTPSDTCLCR+PC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of Tan0022074 vs. ExPASy TrEMBL
Match: A0A5D3DWW1 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00800 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.6e-23
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MKSMSLSAIVLVVLLILNGERMM--MRSVEGLCEKALHGGGCKYDECENGCKAQFGANAI 60
          MKS+S SAI+L +LLI +GE MM  + +V GLCEKALHGGGCK  EC +GCKA FG  A+
Sbjct: 1  MKSISFSAILLALLLIFSGETMMKSVEAVGGLCEKALHGGGCKDAECMSGCKALFGQGAM 60

Query: 61 GLCFFFRTPSDTCLCRFPC 78
          GLCFFFRTPSDTCLCR+PC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

The following BLAST results are available for this feature:

BLAST of Tan0022074 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0022074 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61300.1	4.7e-24	73.42	hypothetical protein Csa_006301 [Cucumis sativus]	[more]
KAA0040390.1	8.9e-23	72.15	Defensin-like protein [Cucumis melo var. makuwa]	[more]
KAA0040274.1	1.5e-22	70.89	Defensin-like protein [Cucumis melo var. makuwa]	[more]
KAA0040398.1	2.0e-22	70.89	Defensin-like protein [Cucumis melo var. makuwa]	[more]
TYK27730.1	2.0e-22	70.89	Defensin-like protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0022074 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH75	2.3e-24	73.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G077550 PE=3 SV=1	[more]
A0A5A7TAP6	4.3e-23	72.15	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35...	[more]
A0A5A7T9W7	7.3e-23	70.89	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23...	[more]
A0A5A7TBW2	9.6e-23	70.89	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35...	[more]
A0A5D3DWW1	9.6e-23	70.89	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22...	[more]

BLAST of Tan0022074 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	Defensin-like protein	PFAM	PF07333	SLR1-BP	coord: 30..77 e-value: 1.9E-7 score: 31.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0022074.1	Tan0022074.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0031640	killing of cells of other organism