Tan0022022 (gene) Snake gourd v1

Overview
NameTan0022022
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionextensin-3-like
LocationLG11: 9524050 .. 9524981 (-)
RNA-Seq ExpressionTan0022022
SyntenyTan0022022
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGTTAGACAAATGTTTTTCTATATATAATGTAGGTGTAAGATACCAAGGTTTGATGAAGCTTGAAAGAGATCTTAAAATCCATCTTCCTAGAATTGGAGAGAAAGAATGAGAATGGGGTCTCACAAATCCCTTTTTGTATTCTTCCTCCTCATGGCATTGGTCTTTTCAAACTTGCCCTCAAAATTTGCTGCACATTATATTCCCCCGGCACCACCACCTCCGGCTACCAGACCTATAGTTCCTTATTATCCTTTTATATTCCCATCTAAGAAGCCTTATAATAAACACACGTCTCCACTGTCGCCGCCGCAGTCAAGGCCAATAGTTCCTTATTATCCATTTAAATTTCCACCACCTCCATCTTCAAAACGCCCCAATCCTCCTCCGAGCAACCATGCCTTTCACCCACAGGGCTCAGCACTGCCGGCCAAGAAGCGTTACATGTCTAAGTCACGGTGGGCAGCCTCACCACCACCACCGCCTAAGAAGCCATATCAGTGGCCGAAGGTGATCAGCCGTAAATCGCCCCCACCTCCTTTCTAATACCTACTACTATATATTTGCATCATATATATGGTGAAGAAGCTTTAGTTTTTTGTATTATATATTTTGGGATTTATTCGTGGTTGTTTTTTCATTCTCTGCATCAAGGAACAAAGAGTGGATTGGAAGATTTCCTTGTTTATCTATGCATCTAGTTTTCATTCACCAAATCAAAACTAGATATGTATTTTTATCCTTTTTGGTCCATGGAGGGATGTGACTTATCGGGTGAAATCTCCCACTTCATAGCTCGATTGACATGAAGTAAGACTTATGATCTAGTGGTCATTAGTTCAAATCCCCCACCCCCAAATGTTGATGTATTCAAAAAAATAAAAATAAAGAGAGGAATATTTTAAATTTATATCTATTAGTTATAAGGGACA

mRNA sequence

ATTGTTAGACAAATGTTTTTCTATATATAATGTAGGTGTAAGATACCAAGGTTTGATGAAGCTTGAAAGAGATCTTAAAATCCATCTTCCTAGAATTGGAGAGAAAGAATGAGAATGGGGTCTCACAAATCCCTTTTTGTATTCTTCCTCCTCATGGCATTGGTCTTTTCAAACTTGCCCTCAAAATTTGCTGCACATTATATTCCCCCGGCACCACCACCTCCGGCTACCAGACCTATAGTTCCTTATTATCCTTTTATATTCCCATCTAAGAAGCCTTATAATAAACACACGTCTCCACTGTCGCCGCCGCAGTCAAGGCCAATAGTTCCTTATTATCCATTTAAATTTCCACCACCTCCATCTTCAAAACGCCCCAATCCTCCTCCGAGCAACCATGCCTTTCACCCACAGGGCTCAGCACTGCCGGCCAAGAAGCGTTACATGTCTAAGTCACGGTGGGCAGCCTCACCACCACCACCGCCTAAGAAGCCATATCAGTGGCCGAAGGTGATCAGCCGTAAATCGCCCCCACCTCCTTTCTAATACCTACTACTATATATTTGCATCATATATATGGTGAAGAAGCTTTAGTTTTTTGTATTATATATTTTGGGATTTATTCGTGGTTGTTTTTTCATTCTCTGCATCAAGGAACAAAGAGTGGATTGGAAGATTTCCTTGTTTATCTATGCATCTAGTTTTCATTCACCAAATCAAAACTAGATATGTATTTTTATCCTTTTTGGTCCATGGAGGGATGTGACTTATCGGGTGAAATCTCCCACTTCATAGCTCGATTGACATGAAGTAAGACTTATGATCTAGTGGTCATTAGTTCAAATCCCCCACCCCCAAATGTTGATGTATTCAAAAAAATAAAAATAAAGAGAGGAATATTTTAAATTTATATCTATTAGTTATAAGGGACA

Coding sequence (CDS)

ATGAGAATGGGGTCTCACAAATCCCTTTTTGTATTCTTCCTCCTCATGGCATTGGTCTTTTCAAACTTGCCCTCAAAATTTGCTGCACATTATATTCCCCCGGCACCACCACCTCCGGCTACCAGACCTATAGTTCCTTATTATCCTTTTATATTCCCATCTAAGAAGCCTTATAATAAACACACGTCTCCACTGTCGCCGCCGCAGTCAAGGCCAATAGTTCCTTATTATCCATTTAAATTTCCACCACCTCCATCTTCAAAACGCCCCAATCCTCCTCCGAGCAACCATGCCTTTCACCCACAGGGCTCAGCACTGCCGGCCAAGAAGCGTTACATGTCTAAGTCACGGTGGGCAGCCTCACCACCACCACCGCCTAAGAAGCCATATCAGTGGCCGAAGGTGATCAGCCGTAAATCGCCCCCACCTCCTTTCTAA

Protein sequence

MRMGSHKSLFVFFLLMALVFSNLPSKFAAHYIPPAPPPPATRPIVPYYPFIFPSKKPYNKHTSPLSPPQSRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHPQGSALPAKKRYMSKSRWAASPPPPPKKPYQWPKVISRKSPPPPF
Homology
BLAST of Tan0022022 vs. NCBI nr
Match: XP_008466986.1 (PREDICTED: extensin-3-like, partial [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 9.8e-23
Identity = 75/127 (59.06%), Postives = 85/127 (66.93%), Query Frame = 0

Query: 3   MGSHKSLFVFFL--LMALVFSNLPSKFAAHYIP-----PAPPPPATRPIVPYYPFIFPS- 62
           M SH  +FVFFL  ++ L+  NLPS FAAHYIP     P P P  TRPIVPY+PFIFP  
Sbjct: 1   MESHNPIFVFFLFIILPLLSLNLPSNFAAHYIPSSLLSPPPMPSITRPIVPYHPFIFPPP 60

Query: 63  -KKPYNKHT---SPLSPPQ--SRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHPQGSALPA 116
            KK + +HT    PL P Q   RPIVPYYP+KFPPPPS K+ NPP S HAF P    LPA
Sbjct: 61  FKKAFRRHTWLPPPLPPQQKLERPIVPYYPYKFPPPPSRKQANPPLSYHAFPPPTLPLPA 120

BLAST of Tan0022022 vs. NCBI nr
Match: KAA0058948.1 (extensin-3-like [Cucumis melo var. makuwa] >TYK15370.1 extensin-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 1.8e-21
Identity = 69/104 (66.35%), Postives = 75/104 (72.12%), Query Frame = 0

Query: 38  PPATRPIVPYYPFIFPS--KKPYNKHT---SPLSPPQ--SRPIVPYYPFKFPPPPSSKRP 97
           P  TRPIVPY+PFIFP   KK + +HT    PL P Q   RPIVPYYP+KFPPPPS K+ 
Sbjct: 2   PSITRPIVPYHPFIFPPPFKKAFRRHTWLPPPLPPQQKLERPIVPYYPYKFPPPPSRKQA 61

Query: 98  NPPPSNHAFHPQGSALPAKKRYMSKSRWAASPPPPPKKPYQWPK 135
           NPP S HAF P    LPAKK YMS+ R AA PPPPPKKPYQWPK
Sbjct: 62  NPPLSYHAFPPPTLPLPAKKLYMSEVRRAA-PPPPPKKPYQWPK 104

BLAST of Tan0022022 vs. NCBI nr
Match: KAE8647164.1 (hypothetical protein Csa_018816, partial [Cucumis sativus] >KGN47688.2 hypothetical protein Csa_018930, partial [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 2.4e-21
Identity = 77/133 (57.89%), Postives = 89/133 (66.92%), Query Frame = 0

Query: 16  MALVFSNLPSKFAAHYIPP---APP--PPATRPIVPYYPFIFPSKKPYNK---HT--SPL 75
           M+L+  NLPS  A H IP    +PP  PP TRPIVP++PF FPS  P+ K   HT   P 
Sbjct: 1   MSLLSLNLPSNSAEHDIPSSLLSPPLMPPITRPIVPHHPFTFPS--PFRKTFRHTWLPPP 60

Query: 76  SPPQ----SRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHPQGSALPAKKRYMSKSRWAAS 135
           SPP      RPIVPY+P+KFPPPPS K+ NPPPS HAF P    L A+K YMS+ R  A+
Sbjct: 61  SPPAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLLLARKLYMSEVR-RAT 120

BLAST of Tan0022022 vs. NCBI nr
Match: XP_022141653.1 (extensin-3-like [Momordica charantia])

HSP 1 Score: 106.7 bits (265), Expect = 1.7e-19
Identity = 78/136 (57.35%), Postives = 88/136 (64.71%), Query Frame = 0

Query: 10  FVFFLLMALVFSNLPSKFAA-HYIPPAPP-----PPAT-RPIVPYYPFIF---PSKKPYN 69
           FV F LMALV   LPSKFAA  YI P+PP     P +T RPIVPYYPFIF   P KKPY 
Sbjct: 10  FVLFFLMALVSPVLPSKFAALQYIHPSPPSLSPSPLSTGRPIVPYYPFIFPPPPPKKPYQ 69

Query: 70  KHTSPLSPP--QSRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHPQGSALPAKKRYMSKSR 129
           + + PL PP  Q RPIVPYYPF+FP         PPP  HAF P  S  P++K Y    R
Sbjct: 70  QTSPPLPPPSLQGRPIVPYYPFRFP---------PPPIYHAF-PHDST-PSQKTYY---R 129

Query: 130 WAASPPPPPKKPYQWP 134
           + +SPPPPPK+PYQWP
Sbjct: 130 FKSSPPPPPKRPYQWP 131

BLAST of Tan0022022 vs. NCBI nr
Match: KAA0058946.1 (extensin-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 5.6e-18
Identity = 68/120 (56.67%), Postives = 78/120 (65.00%), Query Frame = 0

Query: 16  MALVFSNLPSKFAAHYIPP---APP--PPATRPIVPYYPFIFPSK-KPYNKHT-SPLSPP 75
           M L+ SNLPS FA HYIPP   +PP  PP T+PIVPY+PFI P   K  +KHT SP S P
Sbjct: 1   MPLLSSNLPSNFATHYIPPSLLSPPSMPPTTKPIVPYHPFIIPPPFKKTSKHTWSPSSRP 60

Query: 76  Q---SRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHPQGSALPAKKRYMSKSRWAASPPPP 126
           Q    RPIVPYYP+KF PPP  K  +PPP  H F P+     AKK +MS +R AA  PPP
Sbjct: 61  QKELGRPIVPYYPYKFLPPPYRKHAHPPPGYHVFPPRTLPQQAKKLHMSGARQAAPAPPP 120

BLAST of Tan0022022 vs. ExPASy TrEMBL
Match: A0A0A0KD80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G337020 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.9e-27
Identity = 92/159 (57.86%), Postives = 106/159 (66.67%), Query Frame = 0

Query: 3   MGSHKSLFVFFL--LMALVFSNLPSKFAAHYIPP---APP--PPATRPIVPYYPFIFPSK 62
           M S   +FVFFL  +M+L+  NLPS  A H IP    +PP  PP TRPIVP++PF FPS 
Sbjct: 1   MESRNPIFVFFLFIIMSLLSLNLPSNSAEHDIPSSLLSPPLMPPITRPIVPHHPFTFPS- 60

Query: 63  KPYNK---HT--SPLSPPQ----SRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHPQGSAL 122
            P+ K   HT   P SPP      RPIVPY+P+KFPPPPS K+ NPPPS HAF P    L
Sbjct: 61  -PFRKTFRHTWLPPPSPPAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLL 120

Query: 123 PAKKRYMSKSRWAASPPPPPKKPYQWPKVISRKSPPPPF 146
            A+K YMS+ R  A+PPPPP KPYQWPK   RKSPPPPF
Sbjct: 121 LARKLYMSEVR-RATPPPPPIKPYQWPKGKIRKSPPPPF 156

BLAST of Tan0022022 vs. ExPASy TrEMBL
Match: A0A1S3CSG8 (extensin-3-like OS=Cucumis melo OX=3656 GN=LOC103504386 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 4.7e-23
Identity = 75/127 (59.06%), Postives = 85/127 (66.93%), Query Frame = 0

Query: 3   MGSHKSLFVFFL--LMALVFSNLPSKFAAHYIP-----PAPPPPATRPIVPYYPFIFPS- 62
           M SH  +FVFFL  ++ L+  NLPS FAAHYIP     P P P  TRPIVPY+PFIFP  
Sbjct: 1   MESHNPIFVFFLFIILPLLSLNLPSNFAAHYIPSSLLSPPPMPSITRPIVPYHPFIFPPP 60

Query: 63  -KKPYNKHT---SPLSPPQ--SRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHPQGSALPA 116
            KK + +HT    PL P Q   RPIVPYYP+KFPPPPS K+ NPP S HAF P    LPA
Sbjct: 61  FKKAFRRHTWLPPPLPPQQKLERPIVPYYPYKFPPPPSRKQANPPLSYHAFPPPTLPLPA 120

BLAST of Tan0022022 vs. ExPASy TrEMBL
Match: A0A5D3CVI1 (Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold20002G00010 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 8.9e-22
Identity = 69/104 (66.35%), Postives = 75/104 (72.12%), Query Frame = 0

Query: 38  PPATRPIVPYYPFIFPS--KKPYNKHT---SPLSPPQ--SRPIVPYYPFKFPPPPSSKRP 97
           P  TRPIVPY+PFIFP   KK + +HT    PL P Q   RPIVPYYP+KFPPPPS K+ 
Sbjct: 2   PSITRPIVPYHPFIFPPPFKKAFRRHTWLPPPLPPQQKLERPIVPYYPYKFPPPPSRKQA 61

Query: 98  NPPPSNHAFHPQGSALPAKKRYMSKSRWAASPPPPPKKPYQWPK 135
           NPP S HAF P    LPAKK YMS+ R AA PPPPPKKPYQWPK
Sbjct: 62  NPPLSYHAFPPPTLPLPAKKLYMSEVRRAA-PPPPPKKPYQWPK 104

BLAST of Tan0022022 vs. ExPASy TrEMBL
Match: A0A6J1CL44 (extensin-3-like OS=Momordica charantia OX=3673 GN=LOC111011956 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 8.4e-20
Identity = 78/136 (57.35%), Postives = 88/136 (64.71%), Query Frame = 0

Query: 10  FVFFLLMALVFSNLPSKFAA-HYIPPAPP-----PPAT-RPIVPYYPFIF---PSKKPYN 69
           FV F LMALV   LPSKFAA  YI P+PP     P +T RPIVPYYPFIF   P KKPY 
Sbjct: 10  FVLFFLMALVSPVLPSKFAALQYIHPSPPSLSPSPLSTGRPIVPYYPFIFPPPPPKKPYQ 69

Query: 70  KHTSPLSPP--QSRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHPQGSALPAKKRYMSKSR 129
           + + PL PP  Q RPIVPYYPF+FP         PPP  HAF P  S  P++K Y    R
Sbjct: 70  QTSPPLPPPSLQGRPIVPYYPFRFP---------PPPIYHAF-PHDST-PSQKTYY---R 129

Query: 130 WAASPPPPPKKPYQWP 134
           + +SPPPPPK+PYQWP
Sbjct: 130 FKSSPPPPPKRPYQWP 131

BLAST of Tan0022022 vs. ExPASy TrEMBL
Match: A0A5A7UXN4 (Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001280 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.7e-18
Identity = 68/120 (56.67%), Postives = 78/120 (65.00%), Query Frame = 0

Query: 16  MALVFSNLPSKFAAHYIPP---APP--PPATRPIVPYYPFIFPSK-KPYNKHT-SPLSPP 75
           M L+ SNLPS FA HYIPP   +PP  PP T+PIVPY+PFI P   K  +KHT SP S P
Sbjct: 1   MPLLSSNLPSNFATHYIPPSLLSPPSMPPTTKPIVPYHPFIIPPPFKKTSKHTWSPSSRP 60

Query: 76  Q---SRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHPQGSALPAKKRYMSKSRWAASPPPP 126
           Q    RPIVPYYP+KF PPP  K  +PPP  H F P+     AKK +MS +R AA  PPP
Sbjct: 61  QKELGRPIVPYYPYKFLPPPYRKHAHPPPGYHVFPPRTLPQQAKKLHMSGARQAAPAPPP 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_008466986.19.8e-2359.06PREDICTED: extensin-3-like, partial [Cucumis melo][more]
KAA0058948.11.8e-2166.35extensin-3-like [Cucumis melo var. makuwa] >TYK15370.1 extensin-3-like [Cucumis ... [more]
KAE8647164.12.4e-2157.89hypothetical protein Csa_018816, partial [Cucumis sativus] >KGN47688.2 hypotheti... [more]
XP_022141653.11.7e-1957.35extensin-3-like [Momordica charantia][more]
KAA0058946.15.6e-1856.67extensin-3-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A0A0KD801.9e-2757.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G337020 PE=4 SV=1[more]
A0A1S3CSG84.7e-2359.06extensin-3-like OS=Cucumis melo OX=3656 GN=LOC103504386 PE=4 SV=1[more]
A0A5D3CVI18.9e-2266.35Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold20002G00... [more]
A0A6J1CL448.4e-2057.35extensin-3-like OS=Momordica charantia OX=3673 GN=LOC111011956 PE=4 SV=1[more]
A0A5A7UXN42.7e-1856.67Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00128... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0022022.1Tan0022022.1mRNA