Tan0021932 (gene) Snake gourd v1

Overview
NameTan0021932
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
LocationLG10: 708790 .. 709185 (-)
RNA-Seq ExpressionTan0021932
SyntenyTan0021932
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATTCCCGAACTGGCTCAAAGCACGGTTCGTAGTCTGTTAAAAGAAGACGGGGAGTGGGACGTTGATAAGATACGAAGGTATTTCCAGGAAGATGATGTTGGTAATATCCTCCAAATCCCACGTTACGGGATACATAATAATGACGAAATTGTTTGGAAGTATAATCCACGTGGTATCTTTACTGTCAAGAGTGTTTATCGCCTGGGCCTCCAACAACGACTAGCTCAGGAAGCCTCAAGTTCTAACAGTGAGGGTGTTAAGAACTTTTGGAAGTCATTATGGAGTATCCAGATCCCACACAGAATTAAAATTTGCTCATGGAAAATTATCCAGAGTTGCTTACCAATGAAAGACAACTTAATTCGTCGGGGTTTGGAAATCAACCCATAG

mRNA sequence

ATGGTGATTCCCGAACTGGCTCAAAGCACGGTTCGTAGTCTGTTAAAAGAAGACGGGGAGTGGGACGTTGATAAGATACGAAGGTATTTCCAGGAAGATGATGTTGGTAATATCCTCCAAATCCCACGTTACGGGATACATAATAATGACGAAATTGTTTGGAAGTATAATCCACGTGGTATCTTTACTGTCAAGAGTGTTTATCGCCTGGGCCTCCAACAACGACTAGCTCAGGAAGCCTCAAGTTCTAACAGTGAGGGTGTTAAGAACTTTTGGAAGTCATTATGGAGTATCCAGATCCCACACAGAATTAAAATTTGCTCATGGAAAATTATCCAGAGTTGCTTACCAATGAAAGACAACTTAATTCGTCGGGGTTTGGAAATCAACCCATAG

Coding sequence (CDS)

ATGGTGATTCCCGAACTGGCTCAAAGCACGGTTCGTAGTCTGTTAAAAGAAGACGGGGAGTGGGACGTTGATAAGATACGAAGGTATTTCCAGGAAGATGATGTTGGTAATATCCTCCAAATCCCACGTTACGGGATACATAATAATGACGAAATTGTTTGGAAGTATAATCCACGTGGTATCTTTACTGTCAAGAGTGTTTATCGCCTGGGCCTCCAACAACGACTAGCTCAGGAAGCCTCAAGTTCTAACAGTGAGGGTGTTAAGAACTTTTGGAAGTCATTATGGAGTATCCAGATCCCACACAGAATTAAAATTTGCTCATGGAAAATTATCCAGAGTTGCTTACCAATGAAAGACAACTTAATTCGTCGGGGTTTGGAAATCAACCCATAG

Protein sequence

MVIPELAQSTVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICSWKIIQSCLPMKDNLIRRGLEINP
Homology
BLAST of Tan0021932 vs. NCBI nr
Match: KAF4401718.1 (hypothetical protein G4B88_000766 [Cannabis sativa])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-18
Identity = 44/120 (36.67%), Postives = 73/120 (60.83%), Query Frame = 0

Query: 11  VRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRL 70
           +  L+  DG+W +DK++++F E+D+  +  IP   ++  D + W Y P G + VKS YR+
Sbjct: 438 LHELINSDGQWQIDKLQKHFHEEDIPWVQGIP-IDLYVEDTLTWPYTPNGQYMVKSGYRI 497

Query: 71  GLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICSWKIIQSCLPMKDNLIRRGLEIN 130
           G +  L     SSN E +  +WK LWS+ +P R+K+  W++  + LP K NL  RG+++N
Sbjct: 498 GREINL-HPTRSSNMEDIHKWWKMLWSMSLPPRMKLFGWRVCHNWLPAKINLAHRGMDVN 555

BLAST of Tan0021932 vs. NCBI nr
Match: XP_023907624.1 (uncharacterized protein LOC112019319 [Quercus suber])

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-18
Identity = 50/121 (41.32%), Postives = 72/121 (59.50%), Query Frame = 0

Query: 9   STVRSLLKE-DGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSV 68
           S V +LL E  GEW  D ++R F  ++   IL IPR   H ND I+W Y P+GIFTV S 
Sbjct: 509 SMVAALLDEVTGEWKADLVKRVFLPEEAQTILSIPRSNKHANDRIIWAYTPKGIFTVNSA 568

Query: 69  YRLGL-QQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICSWKIIQSCLPMKDNLIRRG 128
           Y++ L     A     S++   + FW++LWS+ IP++IK  +W+  ++ LP K NL  RG
Sbjct: 569 YKVALATSPSASIVGQSDTTAKETFWRTLWSLNIPNKIKNFAWRACRNILPTKVNLRHRG 628

BLAST of Tan0021932 vs. NCBI nr
Match: XP_023905045.1 (uncharacterized protein LOC112016795 [Quercus suber])

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-18
Identity = 49/127 (38.58%), Postives = 76/127 (59.84%), Query Frame = 0

Query: 9    STVRSLLKE-DGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSV 68
            +TV  L+ E  GEW+VD ++  F  DD   IL IPR    N D ++W Y P+G FTV S 
Sbjct: 966  ATVSELIDEVTGEWNVDLVKHVFLPDDAHTILGIPRSSKRNRDRMIWAYTPKGTFTVNSA 1025

Query: 69   YRLGL---QQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICSWKIIQSCLPMKDNLIR 128
            Y++ L   Q +  +E S ++S     FW+ +WS++IP+++K  +W+  ++ LP K NL  
Sbjct: 1026 YKVALSLSQSKAKEETSDASSH--SQFWQKIWSLRIPNKLKTFAWRASRNILPTKANLCS 1085

Query: 129  RGLEINP 132
            RG+  +P
Sbjct: 1086 RGVIDDP 1090

BLAST of Tan0021932 vs. NCBI nr
Match: KAF4391976.1 (hypothetical protein F8388_004305 [Cannabis sativa])

HSP 1 Score: 101.3 bits (251), Expect = 6.6e-18
Identity = 47/123 (38.21%), Postives = 72/123 (58.54%), Query Frame = 0

Query: 9   STVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVY 68
           +TV SLL    EW++D +  YF ++DV  IL IP    H+ D ++W +   G + VKS Y
Sbjct: 43  TTVSSLLNNKDEWNIDTLNNYFHKEDVPWILGIP-IDTHSEDMLIWPFTKDGNYIVKSGY 102

Query: 69  RLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICSWKIIQSCLPMKDNLIRRGLE 128
           R+  +  L     SSN +    +WK  W + +P R+K+  WK+ ++ LP K NL+ RG++
Sbjct: 103 RVAREMNLT-PTRSSNMDQTHAWWKMWWGLNLPPRMKLFGWKMCRNWLPAKTNLVHRGMK 162

Query: 129 INP 132
           INP
Sbjct: 163 INP 163

BLAST of Tan0021932 vs. NCBI nr
Match: XP_030505362.1 (uncharacterized protein LOC115720349 [Cannabis sativa])

HSP 1 Score: 100.9 bits (250), Expect = 8.6e-18
Identity = 47/123 (38.21%), Postives = 71/123 (57.72%), Query Frame = 0

Query: 9   STVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVY 68
           +T+  LL E+G+W  D I  YF +DD+  IL  P   I   D + W  + +G + VKS Y
Sbjct: 539 TTIHKLLTEEGDWKTDMIHAYFHKDDIPWILGTP-VDIQEEDVLTWPLSSKGHYLVKSGY 598

Query: 69  RLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICSWKIIQSCLPMKDNLIRRGLE 128
           R+  +  +      SN + +K +WK  W +Q+P RIK+  WK+  + LP K NLI RG++
Sbjct: 599 RVARELNVC-PTRCSNMDQIKAWWKMWWHLQLPPRIKLFGWKLCHNWLPAKSNLIHRGMQ 658

Query: 129 INP 132
           I+P
Sbjct: 659 IDP 659

BLAST of Tan0021932 vs. ExPASy TrEMBL
Match: A0A803PPQ0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.8e-20
Identity = 48/128 (37.50%), Postives = 78/128 (60.94%), Query Frame = 0

Query: 4   PEL-AQSTVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIF 63
           PEL  Q+ +  L+  DG+W +DK++++F E+D+  +  IP   ++  D + W Y P G +
Sbjct: 757 PELEPQTKLHDLINSDGQWQIDKLQKHFHEEDIPWVQGIP-IDLYVEDTLTWPYTPNGQY 816

Query: 64  TVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICSWKIIQSCLPMKDNL 123
            VKS YR+G +  L     SSN E +  +WK LWS+ +P R+K+  W++  + LP K NL
Sbjct: 817 MVKSGYRIGREINL-HPTRSSNMEDIHKWWKMLWSMSLPPRMKLFGWRVCHNWLPAKINL 876

Query: 124 IRRGLEIN 131
             RG+++N
Sbjct: 877 AHRGMDVN 882

BLAST of Tan0021932 vs. ExPASy TrEMBL
Match: A0A803PR93 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.8e-20
Identity = 48/128 (37.50%), Postives = 78/128 (60.94%), Query Frame = 0

Query: 4   PEL-AQSTVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIF 63
           PEL  Q+ +  L+  DG+W +DK++++F E+D+  +  IP   ++  D + W Y P G +
Sbjct: 57  PELEPQTKLHELINSDGQWQIDKLQKHFHEEDIPWVQGIP-IDLYVEDTLTWPYTPNGQY 116

Query: 64  TVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICSWKIIQSCLPMKDNL 123
            VKS YR+G +  L     SSN E +  +WK LWS+ +P R+K+  W++  + LP K NL
Sbjct: 117 MVKSGYRIGREINL-HPTRSSNMEDIHKWWKMLWSMSLPPRMKLFGWRVCHNWLPAKINL 176

Query: 124 IRRGLEIN 131
             RG+++N
Sbjct: 177 AHRGMDVN 182

BLAST of Tan0021932 vs. ExPASy TrEMBL
Match: A0A803Q6D6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.2e-19
Identity = 46/128 (35.94%), Postives = 77/128 (60.16%), Query Frame = 0

Query: 4   PEL-AQSTVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIF 63
           PE+  Q+ +   +  DG+W +DK++++F E+D+  +  IP   ++  D + W Y P G +
Sbjct: 170 PEIEPQTKLHYFINTDGQWQIDKVKKHFHEEDIPWVQGIP-IDLYVEDTLTWPYTPNGQY 229

Query: 64  TVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICSWKIIQSCLPMKDNL 123
            VKS YR+G +  L     SSN E +  +WK LWS+ +P R+K+  W++  + LP K NL
Sbjct: 230 MVKSGYRIGREINL-HPTRSSNMEDIHKWWKMLWSMSLPPRMKLFGWRVCHNWLPAKTNL 289

Query: 124 IRRGLEIN 131
             RG+++N
Sbjct: 290 AHRGMDVN 295

BLAST of Tan0021932 vs. ExPASy TrEMBL
Match: A0A803PLN3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.7e-19
Identity = 43/124 (34.68%), Postives = 75/124 (60.48%), Query Frame = 0

Query: 8   QSTVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSV 67
           Q+ +   + +DG+W +D+++++F E+D+  +  IP   ++  D + W Y P G + VKS 
Sbjct: 814 QTKLHHFINKDGQWQIDEVKKHFHEEDIPWVQGIP-IDLYVEDTLTWPYTPNGQYIVKSG 873

Query: 68  YRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICSWKIIQSCLPMKDNLIRRGL 127
           YR+G +  +     SSN E    +WK LWS+ +P R+K+  W++  + LP K NL  RG+
Sbjct: 874 YRIGREINI-HPPRSSNMEDTHKWWKMLWSMTLPPRMKLFGWRVCHNWLPAKTNLAHRGM 933

Query: 128 EINP 132
           ++NP
Sbjct: 934 DVNP 935

BLAST of Tan0021932 vs. ExPASy TrEMBL
Match: A0A7J6I3Y4 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_000766 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.4e-19
Identity = 44/120 (36.67%), Postives = 73/120 (60.83%), Query Frame = 0

Query: 11  VRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRL 70
           +  L+  DG+W +DK++++F E+D+  +  IP   ++  D + W Y P G + VKS YR+
Sbjct: 438 LHELINSDGQWQIDKLQKHFHEEDIPWVQGIP-IDLYVEDTLTWPYTPNGQYMVKSGYRI 497

Query: 71  GLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICSWKIIQSCLPMKDNLIRRGLEIN 130
           G +  L     SSN E +  +WK LWS+ +P R+K+  W++  + LP K NL  RG+++N
Sbjct: 498 GREINL-HPTRSSNMEDIHKWWKMLWSMSLPPRMKLFGWRVCHNWLPAKINLAHRGMDVN 555

BLAST of Tan0021932 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09
Identity = 33/127 (25.98%), Postives = 58/127 (45.67%), Query Frame = 0

Query: 8   QSTVRSLLKEDGE---WDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTV 67
           + T+ +L +  G    WD  KI ++  + D G I +I        D+I+W YN  G +TV
Sbjct: 72  EMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTV 131

Query: 68  KSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICSWKIIQSCLPMKDNLIR 127
           +S Y L          + +   G  +    +W++ I  ++K   W+ +   L   + L  
Sbjct: 132 RSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTT 191

Query: 128 RGLEINP 132
           RG+ I+P
Sbjct: 192 RGMRIDP 198

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAF4401718.11.3e-1836.67hypothetical protein G4B88_000766 [Cannabis sativa][more]
XP_023907624.11.7e-1841.32uncharacterized protein LOC112019319 [Quercus suber][more]
XP_023905045.11.7e-1838.58uncharacterized protein LOC112016795 [Quercus suber][more]
KAF4391976.16.6e-1838.21hypothetical protein F8388_004305 [Cannabis sativa][more]
XP_030505362.18.6e-1838.21uncharacterized protein LOC115720349 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
A0A803PPQ05.8e-2037.50Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PR935.8e-2037.50Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803Q6D62.2e-1935.94Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PLN33.7e-1934.68Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7J6I3Y46.4e-1936.67Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_000766 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G09510.12.0e-0925.98Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 62..130
e-value: 1.3E-8
score: 35.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0021932.1Tan0021932.1mRNA