Tan0021820 (gene) Snake gourd v1

Overview


Name	Tan0021820
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	CST complex subunit STN1
Location	LG07: 74364043 .. 74364915 (+)
RNA-Seq Expression	Tan0021820
Synteny	Tan0021820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATGTATTTACCCGAAAAGCCCAAATATAAGCCCAATGGGCCATAACTTTAACTCCGTCTGAGCCAGAGAACCACCGTAGGTTTCCGATGGACCAACAGCAACCCCTCTACCTCTACCACACCCACATCAAGCTCCTGGGTTTCGACCTTAATTCACTCACCCAAAACTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGATGCAGTTTCTTTCTCTCGCAAAGGTTATGCCGTTTCGTGTGCAGAGATCGTCGGCGTTGTGGTCTCTCGCGACCTGAAACCTAACAAGTTTCTCAAATTTTGCGTCGACGATGGCACTGCTAGTGTTGGCTGTATCCTGTGGCTAAACCATCTCACATCGCCTTATTTTGCTTCACGCCACCAGCCAGATGTTCGAATAATTGGAAATATGGCGATCCATTTCGCAGCTGAAATTAAAGTTGGGATTGTTGCTAGGGTTCGGGGGAAGGTGAGCAGCTATAGGGGAGTGGTGCAGATCACGGTGTCAGATGTTGTGGTTGAGGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCCATGAGGTTGGCTCTAAAGTGTTATGACCTCTTCCCTACGCCCACATAGCTGTAGATTCCAATGTTTTAAAATGTTATCTCTACTCTTGTGCTTTTATTTCTGAATGCAGAAAAGATTCGCCTTTTTTTTAGCCTTACTGTCCAAATTTTGCATAAGAGGCTTGATCTTTGAAATGATTATATATGAAAGCTAAGTTGCTACTGCCTGTGTTTTGTTTGTTGGAAATGGCTAAAATTGAACGAGGAAATTAATGACAAATAACCAGGTAACAATTTTTTTTTGCATTGGATGTCATCAAAT

mRNA sequence

CATGTATTTACCCGAAAAGCCCAAATATAAGCCCAATGGGCCATAACTTTAACTCCGTCTGAGCCAGAGAACCACCGTAGGTTTCCGATGGACCAACAGCAACCCCTCTACCTCTACCACACCCACATCAAGCTCCTGGGTTTCGACCTTAATTCACTCACCCAAAACTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGATGCAGTTTCTTTCTCTCGCAAAGGTTATGCCGTTTCGTGTGCAGAGATCGTCGGCGTTGTGGTCTCTCGCGACCTGAAACCTAACAAGTTTCTCAAATTTTGCGTCGACGATGGCACTGCTAGTGTTGGCTGTATCCTGTGGCTAAACCATCTCACATCGCCTTATTTTGCTTCACGCCACCAGCCAGATGTTCGAATAATTGGAAATATGGCGATCCATTTCGCAGCTGAAATTAAAGTTGGGATTGTTGCTAGGGTTCGGGGGAAGGTGAGCAGCTATAGGGGAGTGGTGCAGATCACGGTGTCAGATGTTGTGGTTGAGGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCCATGAGGTTGGCTCTAAAGTGTTATGACCTCTTCCCTACGCCCACATAGCTGTAGATTCCAATGTTTTAAAATGTTATCTCTACTCTTGTGCTTTTATTTCTGAATGCAGAAAAGATTCGCCTTTTTTTTAGCCTTACTGTCCAAATTTTGCATAAGAGGCTTGATCTTTGAAATGATTATATATGAAAGCTAAGTTGCTACTGCCTGTGTTTTGTTTGTTGGAAATGGCTAAAATTGAACGAGGAAATTAATGACAAATAACCAGGTAACAATTTTTTTTTGCATTGGATGTCATCAAAT

Coding sequence (CDS)

ATGGACCAACAGCAACCCCTCTACCTCTACCACACCCACATCAAGCTCCTGGGTTTCGACCTTAATTCACTCACCCAAAACTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGATGCAGTTTCTTTCTCTCGCAAAGGTTATGCCGTTTCGTGTGCAGAGATCGTCGGCGTTGTGGTCTCTCGCGACCTGAAACCTAACAAGTTTCTCAAATTTTGCGTCGACGATGGCACTGCTAGTGTTGGCTGTATCCTGTGGCTAAACCATCTCACATCGCCTTATTTTGCTTCACGCCACCAGCCAGATGTTCGAATAATTGGAAATATGGCGATCCATTTCGCAGCTGAAATTAAAGTTGGGATTGTTGCTAGGGTTCGGGGGAAGGTGAGCAGCTATAGGGGAGTGGTGCAGATCACGGTGTCAGATGTTGTGGTTGAGGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCCATGAGGTTGGCTCTAAAGTGTTATGACCTCTTCCCTACGCCCACATAG

Protein sequence

MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRIIGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTPT

Homology

[Close]

BLAST of Tan0021820 vs. ExPASy Swiss-Prot
Match: Q9LMK5 (CST complex subunit STN1 OS=Arabidopsis thaliana OX=3702 GN=STN1 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.0e-32
Identity = 80/162 (49.38%), Postives = 102/162 (62.96%), Query Frame = 0


Query: 9   LYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLK 68
           L  TH KL+  D+  LTQ+ + S+S S              G  VS  EIVG +VSRDL 
Sbjct: 5   LQSTHAKLVARDIQRLTQSPTESNSFSLLG-----------GACVSRVEIVGTIVSRDLT 64

Query: 69  PNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRIIGNMAIHFAAEIKVGIVARV 128
           P KFLKF VDDGT  V C++WLN LTS YF+      + ++ + A   AA+I++G VARV
Sbjct: 65  P-KFLKFGVDDGTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARV 124

Query: 129 RGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCY 171
           RG+V SYRGV+QIT +  V E DPNAEILHWL+ ++L   CY
Sbjct: 125 RGRVGSYRGVMQITANVAVAERDPNAEILHWLECLKLGQSCY 154

[Close]

BLAST of Tan0021820 vs. NCBI nr
Match: KAG6571457.1 (CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 286.2 bits (731), Expect = 1.9e-73
Identity = 147/176 (83.52%), Postives = 155/176 (88.07%), Query Frame = 0


Query: 1   MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVG 60
           M+QQ+   LYHTHIKLLGFDLNSLTQ       SSSSSSSSDAVSFSR+GYAVSC EIVG
Sbjct: 20  MNQQRAFSLYHTHIKLLGFDLNSLTQ-------SSSSSSSSDAVSFSRRGYAVSCVEIVG 79

Query: 61  VVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRIIGNMAIHFAAEI 120
           VVV RDLKPN+FL+F VDDGT  V CILWLNHLTSPYFA RHQPDVRIIGNMA HFAA+I
Sbjct: 80  VVVFRDLKPNRFLRFSVDDGTGCVSCILWLNHLTSPYFALRHQPDVRIIGNMATHFAAQI 139

Query: 121 KVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTP 177
           +VGIVARVRGKVSSYRGVVQITVSDVVVE+DPNAEILHWLD MRLALKCYDL P P
Sbjct: 140 RVGIVARVRGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 188

[Close]

BLAST of Tan0021820 vs. NCBI nr
Match: KAG7011223.1 (CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 286.2 bits (731), Expect = 1.9e-73
Identity = 147/176 (83.52%), Postives = 155/176 (88.07%), Query Frame = 0


Query: 1   MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVG 60
           M+QQ+   LYHTHIKLLGFDLNSLTQ       SSSSSSSSDAVSFSR+GYAVSC EIVG
Sbjct: 1   MNQQRAFSLYHTHIKLLGFDLNSLTQ-------SSSSSSSSDAVSFSRRGYAVSCVEIVG 60

Query: 61  VVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRIIGNMAIHFAAEI 120
           VVV RDLKPN+FL+F VDDGT  V CILWLNHLTSPYFA RHQPDVRIIGNMA HFAA+I
Sbjct: 61  VVVFRDLKPNRFLRFSVDDGTGCVSCILWLNHLTSPYFALRHQPDVRIIGNMATHFAAQI 120

Query: 121 KVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTP 177
           +VGIVARVRGKVSSYRGVVQITVSDVVVE+DPNAEILHWLD MRLALKCYDL P P
Sbjct: 121 RVGIVARVRGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 169

[Close]

BLAST of Tan0021820 vs. NCBI nr
Match: XP_023553655.1 (CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553656.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553657.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.0 bits (728), Expect = 4.3e-73
Identity = 145/176 (82.39%), Postives = 154/176 (87.50%), Query Frame = 0


Query: 1   MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVG 60
           M+QQ+   LYHTHIKLLGFDLNSL Q        SSSSSSSDAVSFSR+GYAVSC E+VG
Sbjct: 1   MNQQRAFSLYHTHIKLLGFDLNSLAQ--------SSSSSSSDAVSFSRRGYAVSCVEVVG 60

Query: 61  VVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRIIGNMAIHFAAEI 120
           VVV RDLKPN+FL+F VDDGT  V CILWLNHLTSPYFASRHQPDVRIIGNMA HFAA+I
Sbjct: 61  VVVFRDLKPNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQI 120

Query: 121 KVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTP 177
           +VGIVARVRGKVSSYRGVVQITVSDVVVE+DPNAEILHWLD MRLALKCYDL P P
Sbjct: 121 RVGIVARVRGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 168

[Close]

BLAST of Tan0021820 vs. NCBI nr
Match: XP_022963452.1 (LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata])

HSP 1 Score: 283.9 bits (725), Expect = 9.6e-73
Identity = 144/176 (81.82%), Postives = 155/176 (88.07%), Query Frame = 0


Query: 1   MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVG 60
           M+QQ+   LYHTHIKLLGFDLNSLTQ        S+SSSSSDAVSFSR+GYAVSC EIVG
Sbjct: 41  MNQQRAFSLYHTHIKLLGFDLNSLTQ--------SASSSSSDAVSFSRRGYAVSCVEIVG 100

Query: 61  VVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRIIGNMAIHFAAEI 120
           VVV RDLKPN+FL+F VDDGT  V CILWLNHLTSPYFASRHQPDVRIIGNMA HFAA+I
Sbjct: 101 VVVFRDLKPNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQI 160

Query: 121 KVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTP 177
           +VGIVARVRG+VSSYRGVVQ+TVSDVVVE+DPNAEILHWLD MRLALKCYDL P P
Sbjct: 161 RVGIVARVRGRVSSYRGVVQMTVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 208

[Close]

BLAST of Tan0021820 vs. NCBI nr
Match: KAA0057432.1 (CST complex subunit STN1 [Cucumis melo var. makuwa] >TYK30131.1 CST complex subunit STN1 [Cucumis melo var. makuwa])

HSP 1 Score: 270.0 bits (689), Expect = 1.4e-68
Identity = 138/179 (77.09%), Postives = 150/179 (83.80%), Query Frame = 0


Query: 1   MDQQQ--PLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEI 60
           M+Q+Q     LY TH+KLLGFDLNSL QN           SSSD+VSFSRKGYAVSC EI
Sbjct: 1   MNQRQRFSFSLYQTHVKLLGFDLNSLNQN-----------SSSDSVSFSRKGYAVSCTEI 60

Query: 61  VGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRIIGNMAIHFAA 120
           VGVVV RDLKPN+FLKF VDDGTA VGCILWLNHLTS YFASRH PDVRI+ +MA HFAA
Sbjct: 61  VGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAA 120

Query: 121 EIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTPT 178
           +I+VGIV RVRGK+SSYRG+VQITVSDVVVEDDPNAEILHWLDSMRLA+KCYDL P PT
Sbjct: 121 QIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 168

[Close]

BLAST of Tan0021820 vs. ExPASy TrEMBL
Match: A0A6J1HFA9 (LOW QUALITY PROTEIN: CST complex subunit STN1 OS=Cucurbita moschata OX=3662 GN=LOC111463780 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.7e-73
Identity = 144/176 (81.82%), Postives = 155/176 (88.07%), Query Frame = 0


Query: 1   MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVG 60
           M+QQ+   LYHTHIKLLGFDLNSLTQ        S+SSSSSDAVSFSR+GYAVSC EIVG
Sbjct: 41  MNQQRAFSLYHTHIKLLGFDLNSLTQ--------SASSSSSDAVSFSRRGYAVSCVEIVG 100

Query: 61  VVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRIIGNMAIHFAAEI 120
           VVV RDLKPN+FL+F VDDGT  V CILWLNHLTSPYFASRHQPDVRIIGNMA HFAA+I
Sbjct: 101 VVVFRDLKPNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQI 160

Query: 121 KVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTP 177
           +VGIVARVRG+VSSYRGVVQ+TVSDVVVE+DPNAEILHWLD MRLALKCYDL P P
Sbjct: 161 RVGIVARVRGRVSSYRGVVQMTVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 208

[Close]

BLAST of Tan0021820 vs. ExPASy TrEMBL
Match: A0A5D3E3H2 (CST complex subunit STN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001150 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 7.0e-69
Identity = 138/179 (77.09%), Postives = 150/179 (83.80%), Query Frame = 0


Query: 1   MDQQQ--PLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEI 60
           M+Q+Q     LY TH+KLLGFDLNSL QN           SSSD+VSFSRKGYAVSC EI
Sbjct: 1   MNQRQRFSFSLYQTHVKLLGFDLNSLNQN-----------SSSDSVSFSRKGYAVSCTEI 60

Query: 61  VGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRIIGNMAIHFAA 120
           VGVVV RDLKPN+FLKF VDDGTA VGCILWLNHLTS YFASRH PDVRI+ +MA HFAA
Sbjct: 61  VGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAA 120

Query: 121 EIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTPT 178
           +I+VGIV RVRGK+SSYRG+VQITVSDVVVEDDPNAEILHWLDSMRLA+KCYDL P PT
Sbjct: 121 QIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 168

[Close]

BLAST of Tan0021820 vs. ExPASy TrEMBL
Match: A0A1S3BLT5 (CST complex subunit STN1 OS=Cucumis melo OX=3656 GN=LOC103491245 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 7.0e-69
Identity = 138/179 (77.09%), Postives = 150/179 (83.80%), Query Frame = 0


Query: 1   MDQQQ--PLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEI 60
           M+Q+Q     LY TH+KLLGFDLNSL QN           SSSD+VSFSRKGYAVSC EI
Sbjct: 51  MNQRQRFSFSLYQTHVKLLGFDLNSLNQN-----------SSSDSVSFSRKGYAVSCTEI 110

Query: 61  VGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRIIGNMAIHFAA 120
           VGVVV RDLKPN+FLKF VDDGTA VGCILWLNHLTS YFASRH PDVRI+ +MA HFAA
Sbjct: 111 VGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAA 170

Query: 121 EIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTPT 178
           +I+VGIV RVRGK+SSYRG+VQITVSDVVVEDDPNAEILHWLDSMRLA+KCYDL P PT
Sbjct: 171 QIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 218

[Close]

BLAST of Tan0021820 vs. ExPASy TrEMBL
Match: A0A0A0LNV0 (OB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G223720 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 7.7e-68
Identity = 134/169 (79.29%), Postives = 145/169 (85.80%), Query Frame = 0


Query: 9   LYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLK 68
           LY TH+KLL FDLNSL Q           +SSSD+VSFSRKGYAVSC EIVGVVV RDLK
Sbjct: 11  LYQTHVKLLAFDLNSLNQ-----------TSSSDSVSFSRKGYAVSCTEIVGVVVFRDLK 70

Query: 69  PNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRIIGNMAIHFAAEIKVGIVARV 128
           PN+FLKF VDDGTA VGCILWLNHLTS YFASRH  DVRI+G+MA HFAA+I+VGIV RV
Sbjct: 71  PNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRV 130

Query: 129 RGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTPT 178
           RGK+SSYRG+VQITVSDVVVEDDPNAEILHWLDSMRLA+KCYDL PTPT
Sbjct: 131 RGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT 168

[Close]

BLAST of Tan0021820 vs. ExPASy TrEMBL
Match: A0A6J1HUX0 (CST complex subunit STN1 OS=Cucurbita maxima OX=3661 GN=LOC111466921 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.7e-67
Identity = 137/163 (84.05%), Postives = 146/163 (89.57%), Query Frame = 0


Query: 1   MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVG 60
           M+QQ+   LYHTHIKLLGFDLNSLTQ        SSSSSSSDAVSFSR+G+AVSCAEIVG
Sbjct: 19  MNQQRAFSLYHTHIKLLGFDLNSLTQ--------SSSSSSSDAVSFSRRGFAVSCAEIVG 78

Query: 61  VVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRIIGNMAIHFAAEI 120
           VVVSRDLKPN+FL+F VDDGT  V CILWLNHLTSPYFASRHQPDVRIIGNMA HFAA+I
Sbjct: 79  VVVSRDLKPNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQI 138

Query: 121 KVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSM 164
           +VGIVARVRGKVSSYRGVVQITVSDVVVE+DPNAEILHWLD M
Sbjct: 139 RVGIVARVRGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCM 173

[Close]

BLAST of Tan0021820 vs. TAIR 10
Match: AT1G07130.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 141.4 bits (355), Expect = 7.2e-34
Identity = 80/162 (49.38%), Postives = 102/162 (62.96%), Query Frame = 0


Query: 9   LYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLK 68
           L  TH KL+  D+  LTQ+ + S+S S              G  VS  EIVG +VSRDL 
Sbjct: 5   LQSTHAKLVARDIQRLTQSPTESNSFSLLG-----------GACVSRVEIVGTIVSRDLT 64

Query: 69  PNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRIIGNMAIHFAAEIKVGIVARV 128
           P KFLKF VDDGT  V C++WLN LTS YF+      + ++ + A   AA+I++G VARV
Sbjct: 65  P-KFLKFGVDDGTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARV 124

Query: 129 RGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCY 171
           RG+V SYRGV+QIT +  V E DPNAEILHWL+ ++L   CY
Sbjct: 125 RGRVGSYRGVMQITANVAVAERDPNAEILHWLECLKLGQSCY 154

The following BLAST results are available for this feature:

BLAST of Tan0021820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMK5	1.0e-32	49.38	CST complex subunit STN1 OS=Arabidopsis thaliana OX=3702 GN=STN1 PE=1 SV=1	[more]

BLAST of Tan0021820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571457.1	1.9e-73	83.52	CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7011223.1	1.9e-73	83.52	CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023553655.1	4.3e-73	82.39	CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553656.1 CST comple...	[more]
XP_022963452.1	9.6e-73	81.82	LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata]	[more]
KAA0057432.1	1.4e-68	77.09	CST complex subunit STN1 [Cucumis melo var. makuwa] >TYK30131.1 CST complex subu...	[more]

BLAST of Tan0021820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HFA9	4.7e-73	81.82	LOW QUALITY PROTEIN: CST complex subunit STN1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5D3E3H2	7.0e-69	77.09	CST complex subunit STN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BLT5	7.0e-69	77.09	CST complex subunit STN1 OS=Cucumis melo OX=3656 GN=LOC103491245 PE=4 SV=1	[more]
A0A0A0LNV0	7.7e-68	79.29	OB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G223720 PE=4 SV=...	[more]
A0A6J1HUX0	1.7e-67	84.05	CST complex subunit STN1 OS=Cucurbita maxima OX=3661 GN=LOC111466921 PE=4 SV=1	[more]

BLAST of Tan0021820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07130.1	7.2e-34	49.38	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004365	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	PFAM	PF01336	tRNA_anti-codon	coord: 58..147 e-value: 2.0E-7 score: 30.9
None	No IPR available	GENE3D	2.40.50.140		coord: 4..172 e-value: 1.1E-22 score: 82.1
None	No IPR available	PANTHER	PTHR13989:SF33	CST COMPLEX SUBUNIT STN1	coord: 9..172
IPR040260	Replication factor A protein-like	PANTHER	PTHR13989	REPLICATION PROTEIN A-RELATED	coord: 9..172
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 47..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021820.1	Tan0021820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003676	nucleic acid binding