Tan0021798 (gene) Snake gourd v1

Overview


Name	Tan0021798
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	T3P18.3
Location	LG06: 13153089 .. 13156806 (-)
RNA-Seq Expression	Tan0021798
Synteny	Tan0021798

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCACCACGAAAATAGGTATTTCTTCCTCTACCGCGGTCCCCGCCTCGACCACGACCACGACCTCGACCACGATTATTAAAATTCAAAGCATTCACTTCTGGGGAATGGTGTTGCTCGATTGGTCGAGATTCATGATTTTTCATTAATAGCTCGTTATTTTGTTCACCACGAGAAGACATGAAATTAGTTCGGAATATTTTTTAAAGCCTTTCTCTCGATATTGTCTGCTTTGAGGAGCATATTTGAGACATGAAAAGTGGAGAAATCTTCTCTAACATATCAACATCGGTAATTTTTTCTCCGCATAATTTTAGTTTTGAACTAATTTCGAAAAGTGCGGAATTATATTCACTTTCATCGATTTGAAGTCCCGCACCCAGTGCATCCAATCATAACGAGCTTTTGGAAGAATAACTCGCTTTTTGATGATCATACCTTTCTTTCAAGCCTTGCCATAGAATGTAGGGATCTTTTATTGTAAGATACTCCATTTTCAATCCCTCGTGAAGATGATGGCGAAGGAAGATCATAACTTTGGCTTTTTCTTGATTCGATGCATCATTTCCTTCTTTAATTGTTTATCCAAGATTCATGGAGTCTAAATGGATCTCAGCATCAAGGACCCATGACAAGTAGTTATTTCCATTAATATCCAGGGCCGCAAATTCTAATTTTGCAAGATTTGCCATAGTAATACTTCAGTGGAAAAATCGGCAGAGCTTCGTGCTGATAACGTGTTATAAAAATAGAATGAAAATCGGGTATAATTTTACCAATATTTAAATACTAATATAATATATTTATAATAATAATAATAAAATAATAATAATAATAAGAAGAAGAAGAAATTAGAATTTAATATAAATACATATATAATATTAATAATGAGATAGTGGAAATATATATAATATAAATATGTGATAGTGGAAAATGATGGCAAAAATTAAATAGATAAAAGAAAGTGGAAGAGGAGAAAGGAAATTGGTCTAAATTTCACCAAATGGATGTGTTTTATTTTTTCACCAAAAGCCACTATTTATAGGCAATTTGGCAAGGGTGTGTTGGTACAATTGGACACCAAGCATTGGTAAGAGATGGACACATGGAGGACACTATGGCTATGGAGGCTTTGCCATTTGACATGAGTATTGAAGGGCACATTGCATGGGCATCTATTATGTGTAATATTTACGATAATAAATACTACTTCCACTTATAGATTTCCACTTATAGATTTCCTTATTTTTGCTATTTATTTTTTGCTTATATTTTCAAAAACCAAACAAAGTTTTGAAAAACTAAAAACAAAAATGTTTATTTTTCTTTTTGAAATTTGACTAAGAATTCAAATGTTTTTTTAAGAAAGATAAAACCGATTGTAGAGAAATGATAAGAAAACAAACACAATTTTTTTAAAAACAAAAAACTAGAAACCATGACCCTATTTGATAACCATTTGGTTTTTAGAATGCTTGTTTTTCCACAATTTCTCTTCATTTTCTCTACAATGGTTTTCATCTTTCTTGAGGTACTATTTAAGTTTCTAGTCAAATTTCAAAAACAAACCCAAGCTTTTGAAAACTACTTTTTTTTAGTTTTCAAAACTTAATTTGGTTTTTGAAAACTTAGGTACGTAGATAAGAAAACATATAACCTCATTGGTAAAAGTAGTATTTTTAGATTTAATTTTAAAAAACAAAAAACAAAAAACTAAATGGTTATCAAACGGGGCCAAAACTATGAAATTCATTTTTTAATACTTTGCTCAATGATGAATATAAAGTTTTAGTGTATGGTTCTTTAATCTGCAGCATAAAATATAAATATCAACTAGACCATATATAACATCAACATATTTGGATGCAGCTGACAATTATGGTACTCAGCAAATATTTAAAGATGCAAAAGATATTCACATACATCATCAATATCCTGCTCCAAATAACCATTTGGATGAGCAATCAAAGAACATCAACAACAGTAGTATGTTTATTAATTTACAATCTTTTTTAAAAACATATGGAATTTTGCTGAATGGCTAACTGTTTTATCCTCATATTTTGATGCAGGTAATTCTATTAATCCAGAGATAATTGGGGATGATAACAAAGTTGAATTCAATATATTGCATTCTTCTAAACCTGAATTGAACCGTTCTTCCTTTGAGCGCAAAAGTGGAAATCAACATGGTATGTATCAATTTTGAGTTGGGTGAGTTGTTAAGGTTTAATTTGTCTAGTGTTTTTTTTCTTACTTGAGTTAATACAATTTATTAATTCACATCAACATTTTATTCATTAACTTTAACATTTGATGATATTATGAACTTGAATTTCATATATATATAAATTATGAACTTGAATTGAACCAAAGCGGAAGCTGGTGGACATGTGACACCTAAGAAAAGGAGGGGTGCATGAATGAATCAGGACCACATCTGAATGAGAGGAATCCTGAAGACAGGAAAGTATGGTTGAGAAAGATAAAAATATGGTTAAGAAAGGGTTAAAAGAATTGATACCTACTACTTATATAAACAATGTGCACCTTCCTTTTCGATGGATCAATCATAGGAACTCCAAAATTAAGCGTGTTGGCTTGGAGCAATCCTATGTTGGGTGACCTCTTGGAAATTTTTATAGGGAGCATGTGAATGTGAGTGAGGACAAAACATGCTAAGGACCCCGTGTGTTGGTTTGTGGGGATAATGTTTTCACTTTTACAAGTAGTTAAGGATGGTATGGTGACGAGGCCAGGTTATAGGGGATGTGGGGGAATGTCGAGGCCAATAGAGATCGAATCCGGATTCCAAATCTCAATCCGAATCCTGGGTCTAGACACTGACCTTCCCTTTAAGGTTGACCATGTTTGAGCGAAGGATCATGGCGTCGCATGGTGTGACAAGTATCAAGGGTAAAGGCCCAATTCAAAGTTATGAGAATAAAGGATACGACTAAATGGAAACATTAGCTCAACTTTGTTGAGGAGAAAACCTGAAGCTAACAAGCCCATTGATCTCACAAGAATTCCAGAACATTCATGCGATCACGTTTGTTAGAATTTGGTTCTTTTGTATCCAATTCTTTTGTGACATCTGTCATCTAGGGTTATTTGTTTTATTCTTTTCGTTCTCAGCCTCTGAGGCTGGAATGTGTATTTAAAATGTACAGTATCTTTTGGCTTGAGCATTACGAAATATAGAAGAGTAATTCTCCTCTCTTTTAGCCTTCAATTATCTAAATTTGGTATCAGAGCTTCAATGGCCTACGCCTAATTAGTCGGAGCTTCATCATCCTCCACTGCATCGCCACACTTCAGTAGTCCTCTGCTAAACCAGCTCTTTAATCAGGTGACATCGATAAAATTGGAGTATGGGAATTTTTTAATATGGAAAACACTTGCACTCCCGATTCTTCAAGCTATAAGCTCGAAGGACATTTACTAGGTACTCAAGTATGCCCACCAATGTTTTTACAACAAATTTCTAATCCTTCTGCAGAAGCAGTGTCTACAAGCTCTGGAACAACTGCTGAAATTTTCTCAGTGGGAGAAGGCATGTGTGTTAATCCGCTTTACGAATCCTGGGTTACAGTCGACCAGTTGTTGGTAGGGTGGTTGTACAATTCAATGACGTCAGAGGTTGCTACACAAGTGATGGGATTCAAGACAACCAAAGAGTTGTGGGATGCGATACAATCCCTATTTGGCATTTAA

mRNA sequence

ATGCCCACCACGAAAATAGGTATTTCTTCCTCTACCGCGGTCCCCGCCTCGACCACGACCACGACCTCGACCACGATTATTAAAATTCAAAGCATTCACTTCTGGGGAATGGTGTTGCTCGATTGCGCAAAAGTGGAAATCAACATGGTATGTATCAATTTTGAGTTGGGTGAGTTGTTAAGGATACGACTAAATGGAAACATTAGCTCAACTTTGTTGAGGAGAAAACCTGAAGCTAACAAGCCCATTGATCTCACAAGAATTCCAGAACATTCATGCGATCACGTTTTATGCCCACCAATGTTTTTACAACAAATTTCTAATCCTTCTGCAGAAGCAGTGTCTACAAGCTCTGGAACAACTGCTGAAATTTTCTCAGTGGGAGAAGGCATGTGTGTTAATCCGCTTTACGAATCCTGGGTTACAGTCGACCAGTTGTTGGTAGGGTGGTTGTACAATTCAATGACGTCAGAGGTTGCTACACAAGTGATGGGATTCAAGACAACCAAAGAGTTGTGGGATGCGATACAATCCCTATTTGGCATTTAA

Coding sequence (CDS)

ATGCCCACCACGAAAATAGGTATTTCTTCCTCTACCGCGGTCCCCGCCTCGACCACGACCACGACCTCGACCACGATTATTAAAATTCAAAGCATTCACTTCTGGGGAATGGTGTTGCTCGATTGCGCAAAAGTGGAAATCAACATGGTATGTATCAATTTTGAGTTGGGTGAGTTGTTAAGGATACGACTAAATGGAAACATTAGCTCAACTTTGTTGAGGAGAAAACCTGAAGCTAACAAGCCCATTGATCTCACAAGAATTCCAGAACATTCATGCGATCACGTTTTATGCCCACCAATGTTTTTACAACAAATTTCTAATCCTTCTGCAGAAGCAGTGTCTACAAGCTCTGGAACAACTGCTGAAATTTTCTCAGTGGGAGAAGGCATGTGTGTTAATCCGCTTTACGAATCCTGGGTTACAGTCGACCAGTTGTTGGTAGGGTGGTTGTACAATTCAATGACGTCAGAGGTTGCTACACAAGTGATGGGATTCAAGACAACCAAAGAGTTGTGGGATGCGATACAATCCCTATTTGGCATTTAA

Protein sequence

MPTTKIGISSSTAVPASTTTTTSTTIIKIQSIHFWGMVLLDCAKVEINMVCINFELGELLRIRLNGNISSTLLRRKPEANKPIDLTRIPEHSCDHVLCPPMFLQQISNPSAEAVSTSSGTTAEIFSVGEGMCVNPLYESWVTVDQLLVGWLYNSMTSEVATQVMGFKTTKELWDAIQSLFGI

Homology

[Close]

BLAST of Tan0021798 vs. NCBI nr
Match: XP_022148963.1 (uncharacterized protein LOC111017501 [Momordica charantia])

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-14
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 101 MFLQQ-ISNPSAEAVSTSSGTTAEIFSVGEGMCVNPLYESWVTVDQLLVGWLYNSMTSEV 160
           MF+QQ I N      + S+ +++   S+     +NPLYESWVT DQLL+GWLYNSMT EV
Sbjct: 1   MFVQQSIGNMETSQTNISAPSSS---SIATEAAINPLYESWVTTDQLLLGWLYNSMTPEV 60

Query: 161 ATQVMGFKTTKELWDAIQSLFGI 183
           ATQVMG++   +LW AIQ LFG+
Sbjct: 61  ATQVMGYENACDLWAAIQELFGV 80

[Close]

BLAST of Tan0021798 vs. NCBI nr
Match: XP_031745012.1 (uncharacterized protein LOC116405217 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-13
Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 87  RIPEHSCDHVLCPPMFLQQISNPSAEAVSTSSGTTAEIFSVGEGMCVNPLYESWVTVDQL 146
           ++  H  +   CPP F   I NP+  A S S+ T            VNP ++ WVT D L
Sbjct: 52  KLQGHLTEENQCPPKF---IINPTCGASSRSTTTKT----------VNPKFDQWVTFDLL 111

Query: 147 LVGWLYNSMTSEVATQVMGFKTTKELWDAIQSLFGI 183
           L+GW+YNSMT EVA Q+MGF T K+LW+AIQ LFG+
Sbjct: 112 LLGWMYNSMTPEVALQLMGFNTAKDLWEAIQDLFGV 134

[Close]

BLAST of Tan0021798 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-13
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 98  CPPMFLQQISNPSAEAVSTSSGTTAEIFSVGEGMCVNPLYESWVTVDQLLVGWLYNSMTS 157
           CPP  L     P+    STSS ++  +         NP YE+W+ VD+LL+GWLYNSM +
Sbjct: 70  CPPTHLVPTDTPTNIEGSTSSQSSPTL---------NPTYEAWIVVDKLLLGWLYNSMAA 129

Query: 158 EVATQVMGFKTTKELWDAIQSLFGI 183
           +VA QVMGF T++ELW A+Q LFG+
Sbjct: 130 DVAMQVMGFSTSRELWTAVQELFGV 145

[Close]

BLAST of Tan0021798 vs. NCBI nr
Match: XP_038887015.1 (uncharacterized protein LOC120077182 [Benincasa hispida])

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-13
Identity = 45/96 (46.88%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 87  RIPEHSCDHVLCPPMFLQQISNPSAEAVSTSSGTTAEIFSVGEGMCVNPLYESWVTVDQL 146
           ++  H     +C PMF    + PS E     S  +    S       NPLYE WVT DQL
Sbjct: 54  KLERHLSGTKICSPMFTVS-TIPSIETGDFGSQASGGASSATGERTFNPLYEVWVTADQL 113

Query: 147 LVGWLYNSMTSEVATQVMGFKTTKELWDAIQSLFGI 183
           L+GW YNSMT EVA Q+MG ++ K LWDAI SLFG+
Sbjct: 114 LLGWPYNSMTPEVAVQLMGHESAKSLWDAIHSLFGV 148

[Close]

BLAST of Tan0021798 vs. NCBI nr
Match: XP_038875135.1 (uncharacterized protein LOC120067668 [Benincasa hispida])

HSP 1 Score: 84.7 bits (208), Expect = 8.8e-13
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 133 VNPLYESWVTVDQLLVGWLYNSMTSEVATQVMGFKTTKELWDAIQSLFGI 183
           +NPLYE+WVT DQLL+GWLYNSM  EVA Q+MGF+  K LWDAI SLFG+
Sbjct: 64  LNPLYEAWVTADQLLLGWLYNSMAPEVAVQLMGFENAKSLWDAIHSLFGV 113

[Close]

BLAST of Tan0021798 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-14
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 101 MFLQQ-ISNPSAEAVSTSSGTTAEIFSVGEGMCVNPLYESWVTVDQLLVGWLYNSMTSEV 160
           MF+QQ I N      + S+ +++   S+     +NPLYESWVT DQLL+GWLYNSMT EV
Sbjct: 1   MFVQQSIGNMETSQTNISAPSSS---SIATEAAINPLYESWVTTDQLLLGWLYNSMTPEV 60

Query: 161 ATQVMGFKTTKELWDAIQSLFGI 183
           ATQVMG++   +LW AIQ LFG+
Sbjct: 61  ATQVMGYENACDLWAAIQELFGV 80

[Close]

BLAST of Tan0021798 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-13
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 98  CPPMFLQQISNPSAEAVSTSSGTTAEIFSVGEGMCVNPLYESWVTVDQLLVGWLYNSMTS 157
           CPP  L     P+    STSS ++  +         NP YE+W+ VD+LL+GWLYNSM +
Sbjct: 70  CPPTHLVPTDTPTNIEGSTSSQSSPTL---------NPTYEAWIVVDKLLLGWLYNSMAA 129

Query: 158 EVATQVMGFKTTKELWDAIQSLFGI 183
           +VA QVMGF T++ELW A+Q LFG+
Sbjct: 130 DVAMQVMGFSTSRELWTAVQELFGV 145

[Close]

BLAST of Tan0021798 vs. ExPASy TrEMBL
Match: A0A5D3E3L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001590 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-12
Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 99  PPMFLQQISNPSAEAVS------TSSGTTAEIFSVGEGMCVNPLYESWVTVDQLLVGWLY 158
           P  FL  ++  S E V        S GT A   +      VNP YE WVT D LL+G +Y
Sbjct: 25  PLKFLSSVAGESTETVGVEASSVVSEGTVASSSTSMNSKIVNPKYEQWVTSDMLLLGLIY 84

Query: 159 NSMTSEVATQVMGFKTTKELWDAIQSLFGI 183
           NSM  +VA Q+MGF T K+LW+AIQ+LFGI
Sbjct: 85  NSMVPDVALQLMGFNTAKDLWEAIQNLFGI 114

[Close]

BLAST of Tan0021798 vs. ExPASy TrEMBL
Match: A0A1S4E1U9 (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.6e-12
Identity = 39/96 (40.62%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 87  RIPEHSCDHVLCPPMFLQQISNPSAEAVSTSSGTTAEIFSVGEGMCVNPLYESWVTVDQL 146
           ++  H      CP  F+   S+ +       +  T    S      VNPL+E WVT D L
Sbjct: 55  KLEGHLTAETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLL 114

Query: 147 LVGWLYNSMTSEVATQVMGFKTTKELWDAIQSLFGI 183
           L+GWLYNSMT +VA Q+MGF   ++LWDA Q  FG+
Sbjct: 115 LLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGV 150

[Close]

BLAST of Tan0021798 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.6e-12
Identity = 39/96 (40.62%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 87  RIPEHSCDHVLCPPMFLQQISNPSAEAVSTSSGTTAEIFSVGEGMCVNPLYESWVTVDQL 146
           ++  H      CP  F+   S+ +       +  T    S      VNPL+E WVT D L
Sbjct: 55  KLEGHLTAETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLL 114

Query: 147 LVGWLYNSMTSEVATQVMGFKTTKELWDAIQSLFGI 183
           L+GWLYNSMT +VA Q+MGF   ++LWDA Q  FG+
Sbjct: 115 LLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGV 150

The following BLAST results are available for this feature:

BLAST of Tan0021798 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0021798 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148963.1	2.7e-14	54.22	uncharacterized protein LOC111017501 [Momordica charantia]	[more]
XP_031745012.1	1.8e-13	46.88	uncharacterized protein LOC116405217 [Cucumis sativus]	[more]
XP_022151683.1	2.3e-13	48.24	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
XP_038887015.1	3.0e-13	46.88	uncharacterized protein LOC120077182 [Benincasa hispida]	[more]
XP_038875135.1	8.8e-13	72.00	uncharacterized protein LOC120067668 [Benincasa hispida]	[more]

BLAST of Tan0021798 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5J0	1.3e-14	54.22	uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DCW4	1.1e-13	48.24	uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5D3E3L7	2.1e-12	47.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4E1U9	3.6e-12	40.63	uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E1U6	3.6e-12	40.63	uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Tan0021798 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021798.1	Tan0021798.1	mRNA