Tan0021762 (gene) Snake gourd v1

Overview
NameTan0021762
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
LocationLG01: 40960648 .. 40961238 (+)
RNA-Seq ExpressionTan0021762
SyntenyTan0021762
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGTTCTGGTTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTGTACGGGCCAAAGTTCTAGTTCTAACACTGTGAGTGACAAAACGAACTTCGAAAACGATCTATGTGCTTGAAATATGCTTTAAGAAATGCAAGTTTTGCTAGAATGAAAGGGTTTCAATGTTTTATGTTTACTTTTGGAACACATATTTATGAGCATTCATGTTTTCCTTAAAATGTTTTCATGTATATGATGTGAGCCTAGATTTCCCGATGAAACTTATACATGATCATATGTTTATTGATTTCTGAAATTTATGGAAATGTTATGATTTCGAGTAAGTATGATTTAAAGATTTCCAGATTTTATGAACAAGCTGAGTATGCTTGAGTTTTACGAAAGAAAAGATAAGCAGGCATGTTCAAATATTTTTATGTGTTTTCTAAGATATTGAGCCCGAGGCTTTATGGTACCGTGTGCACACAGGTCATATATTGTTGTTGACGTTGAGTGTACTCCGTGACAACAATGCTGTCGTGAGTGTTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAG

mRNA sequence

ATGTTTGGTTCTGGTTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTGTACGGGCCAAAGTTCTAGTTCTAACACTATTTCCAGATTTTATGAACAAGCTGAGTCATATATTGTTGTTGACGTTGAGTGTACTCCGTGACAACAATGCTGTCGTGAGTGTTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAG

Coding sequence (CDS)

ATGTTTGGTTCTGGTTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTGTACGGGCCAAAGTTCTAGTTCTAACACTATTTCCAGATTTTATGAACAAGCTGAGTCATATATTGTTGTTGACGTTGAGTGTACTCCGTGACAACAATGCTGTCGTGAGTGTTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAG

Protein sequence

MFGSGLFDRPRGNRSSVRAKVLVLTLFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
Homology
[Close]
BLAST of Tan0021762 vs. NCBI nr
Match: TYK27262.1 (hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 7.6e-08
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 0 

Query: 4   SGLFDRPRGNRSSVRAKVLVLTLFPDFMNKLSHILLL------------TLSVLRDNNAV 63
           SG   + RGNR S++   L  T+  D+M ++  + L             TLSVLR+N+A 
Sbjct: 215 SGKSGKQRGNRPSLQTGELDKTISTDYMTEILSLSLYGTVCTQVIFSLSTLSVLRNNDAA 274

Query: 64  VSVGRAPLRQRRWECWAGPTTS 74
           VS GR PLRQRRWEC  GPTTS
Sbjct: 275 VSAGRIPLRQRRWECRTGPTTS 296

[Close]
BLAST of Tan0021762 vs. NCBI nr
Match: KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 0 

Query: 8   DRPRGNRSSVRAKVLVLT-LFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRRWEC 67
           + PRGNR S++ + +  T +FP          L TLSVL DN+AVVS G+APLRQRRWEC
Sbjct: 81  EMPRGNRLSLQTEEIDKTVIFP----------LSTLSVLSDNDAVVSAGQAPLRQRRWEC 137

Query: 68  WAGPTTS 74
             GPTTS
Sbjct: 141 RTGPTTS 137

[Close]
BLAST of Tan0021762 vs. NCBI nr
Match: TYK03091.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 0 

Query: 8   DRPRGNRSSVRAKVLVLT-LFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRRWEC 67
           + PRGNR S++ + +  T +FP          L TLSVL DN+AVVS G+APLRQRRWEC
Sbjct: 81  EMPRGNRLSLQTEEIDKTVIFP----------LSTLSVLSDNDAVVSAGQAPLRQRRWEC 137

Query: 68  WAGPTTS 74
             GPTTS
Sbjct: 141 RTGPTTS 137

[Close]
BLAST of Tan0021762 vs. NCBI nr
Match: KAA0033241.1 (hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa] >TYK20418.1 hypothetical protein E5676_scaffold590G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 36 HILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS 74
          ++ LLTL+VLRDN+A+VS GR PLRQR+WECWA PTTS
Sbjct: 32 YVSLLTLNVLRDNDAIVSAGRVPLRQRQWECWASPTTS 69

[Close]
BLAST of Tan0021762 vs. NCBI nr
Match: KAA0040296.1 (hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-06
Identity = 36/70 (51.43%), Postives = 42/70 (60.00%), Query Frame = 0 

Query: 4   SGLFDRPRGNRSSVRAKVLVLTLFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRR 63
           SG   + RGNR S++   L  T+            L TLSVLR+N+A VS GR PLRQRR
Sbjct: 177 SGKSGKQRGNRPSLQTGELDKTVI---------FSLSTLSVLRNNDAAVSAGRVPLRQRR 236

Query: 64  WECWAGPTTS 74
           WEC  GPTTS
Sbjct: 237 WECRTGPTTS 237

[Close]
BLAST of Tan0021762 vs. ExPASy TrEMBL
Match: A0A5D3DUS7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold244G00290 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.7e-08
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 0 

Query: 4   SGLFDRPRGNRSSVRAKVLVLTLFPDFMNKLSHILLL------------TLSVLRDNNAV 63
           SG   + RGNR S++   L  T+  D+M ++  + L             TLSVLR+N+A 
Sbjct: 215 SGKSGKQRGNRPSLQTGELDKTISTDYMTEILSLSLYGTVCTQVIFSLSTLSVLRNNDAA 274

Query: 64  VSVGRAPLRQRRWECWAGPTTS 74
           VS GR PLRQRRWEC  GPTTS
Sbjct: 275 VSAGRIPLRQRRWECRTGPTTS 296

[Close]
BLAST of Tan0021762 vs. ExPASy TrEMBL
Match: A0A5A7SUV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold590G00130 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.3e-08
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 36 HILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS 74
          ++ LLTL+VLRDN+A+VS GR PLRQR+WECWA PTTS
Sbjct: 32 YVSLLTLNVLRDNDAIVSAGRVPLRQRQWECWASPTTS 69

[Close]
BLAST of Tan0021762 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.3e-08
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 0 

Query: 8   DRPRGNRSSVRAKVLVLT-LFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRRWEC 67
           + PRGNR S++ + +  T +FP          L TLSVL DN+AVVS G+APLRQRRWEC
Sbjct: 81  EMPRGNRLSLQTEEIDKTVIFP----------LSTLSVLSDNDAVVSAGQAPLRQRRWEC 137

Query: 68  WAGPTTS 74
             GPTTS
Sbjct: 141 RTGPTTS 137

[Close]
BLAST of Tan0021762 vs. ExPASy TrEMBL
Match: A0A5A7T7M6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002250 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.3e-08
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 0 

Query: 8   DRPRGNRSSVRAKVLVLT-LFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRRWEC 67
           + PRGNR S++ + +  T +FP          L TLSVL DN+AVVS G+APLRQRRWEC
Sbjct: 81  EMPRGNRLSLQTEEIDKTVIFP----------LSTLSVLSDNDAVVSAGQAPLRQRRWEC 137

Query: 68  WAGPTTS 74
             GPTTS
Sbjct: 141 RTGPTTS 137

[Close]
BLAST of Tan0021762 vs. ExPASy TrEMBL
Match: A0A5A7TDY3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2379G00310 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.1e-07
Identity = 36/70 (51.43%), Postives = 42/70 (60.00%), Query Frame = 0 

Query: 4   SGLFDRPRGNRSSVRAKVLVLTLFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRR 63
           SG   + RGNR S++   L  T+            L TLSVLR+N+A VS GR PLRQRR
Sbjct: 177 SGKSGKQRGNRPSLQTGELDKTVI---------FSLSTLSVLRNNDAAVSAGRVPLRQRR 236

Query: 64  WECWAGPTTS 74
           WEC  GPTTS
Sbjct: 237 WECRTGPTTS 237

The following BLAST results are available for this feature:
BLAST of Tan0021762 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0021762 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK27262.17.6e-0846.34hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa][more]
KAA0037581.11.3e-0755.22reverse transcriptase [Cucumis melo var. makuwa][more]
TYK03091.11.3e-0755.22reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0033241.11.3e-0773.68hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa] >TYK2041... [more]
KAA0040296.11.9e-0651.43hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa][more]
BLAST of Tan0021762 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DUS73.7e-0846.34Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SUV26.3e-0873.68Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BTP36.3e-0855.22Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
A0A5A7T7M66.3e-0855.22Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5A7TDY39.1e-0751.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Tan0021762 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0021762.1Tan0021762.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016740 transferase activity