Tan0021756 (gene) Snake gourd v1

Overview
NameTan0021756
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPolyketide_cyc domain-containing protein
LocationLG04: 20048887 .. 20052700 (-)
RNA-Seq ExpressionTan0021756
SyntenyTan0021756
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTATGTCCATGAATTTTATGAATTTTTCATAACTTAGTTTAATTTTGTATTTATATTCAATAAAGTTTAATACTTTAGTTGTTTGTGTTAATTTGATGAGTTTAGTTGTTTATGTTCTTTGTACTGTATATATATGTTATTCAAACCTCAATTATCTTTGTTTTAGATGTTTTTGTTCTTCTGATTAGGTTTTTCTTTTGTGATGTTTCGTATCTTCAATTCCATGCTCTGTGACCACACTATTTCTCTATTTTTCGTGATAAAATAAAAGTAGAAAGATATCAATTAAATAATAACTTAAACAAAAAGGAAGTGAACGAAGACAGTACAGGTCTCACACTTGACTTTCGAGACTGGAGGATTTTGATTTTGTCTTTTGTTTCGCTCTGTTTGGATCGATCTTGCCCTCTGTCGATGGAATTTGTAGGGTTGTGTAAAAGGTTTGGATCTGTGACCAATTTTTCTGGAAATTCAGTACGAGTTTTAATTATTTAATTTTATGATTTGTCATTATGATGACTAATAGTGTTGATTTGACCGATGAGAAACACCATTTGTTCCTTGAATTCATGGAGGCATATTTTTTAAGCTAGATGTTTGTGCATTCAGTTCGTCCCTGCTCCAACAAGGAAAATTCCTCACACACAAAATTGCACAACCAAAGTCAGGTCGCCTCTCATGGCCACTCATATTTTGGCCAGGTTCATCCTGATTGCTCTTTCTTGATGAGTTGAGTTTTATCTATTTTCTGAATTATGCCTTGTAAATGCTCCTTTTGTTATTTTTGTTGCTTTCATTCATCGACACAATTTAAGGTTCTTCGACAAGACAGCTGGAAGAACATTAATTTTGACCCAACGGAATCTCGACCTAATTTATTGTATGATTACCAAGCCCTCTCGAGTAATCCATGGATACATCACTTCAGAGTTGCTCGCGAAAACAAAAAATGTTGCATGTAAAAGTCAAGCTATCAATTCAAGAGGAAGGAATTTGTTGCCATTCGGAGCAGCTAATAATTCAGGACCTATGGGCGGTTGCAACTCTGATTTGTCTCAGCAATATATCAACAACAATAAAGGTAGATCTCTGAGCCTTTGAGGTTATAAATTATCAATATTTGATTGATAAATTTGTGTTTCTCCTTGATTGTAATTTAGTTTATCACGTTTAAGATTGCTAGTTAGGGATTCTAAGTTTGAAGATATTTGCCCTGTATCTAGTCTTCACTACCAGAAATTTCTGAGTAGAAACAAATAATGTGAGTCAGTGAACTCGGTTGTCAATCTGTTTGTAAGTGTATTGTTTGTTGAATTCTGATTCTGAAGCTCAACCTAATCTTTAATTGAAGTCTGGTAGAGGTTGAGCATTTATTGAACCTTAAGGAGTGTTTACTTCGATTTACAGGTCTCAGAGAAATTTTGGTTATCTTCTAGTTATCGTTATGTTGCCAAAATTTGGACACAGACGGCGTGACTGGGTAACCTTCCTAGCTAGATTCATATGGATATTTATATCCTAGTATTTCCTATTTTTGTTTCAGTTACTTGGATTGTTCATTTTGTTATATGTCTGCTAATTGATCCTCCGCTTTCTCCTTTCCTGAATGAGTTTTTTTATCAAGTTGGATGATGTCTAGGGTACTTTTATCTCATATTGTCTAAACCCCCTCTTTTTTATTTTTATGAGGATACTTTTTTCCTTTTTCAAATATTATGATTAGTGTGATTAAGTATTATAGATGTACTGCTATTGTATTATTAGATGATTTAAGTATTTTGTGTGTGTGGCTATGTATTACTAGAAGTGTTAGCTTGCATAATTTCTATTTGGAGGAAGATCAGGCTGATCATCTAGATTTACAGTCCTTGATGGAGTACTTGGTTGAATTGAAAACTAGAATCTTTTTGAGTCCTTCGAGTCTTTGAATCGAAGGTTTTGGATTTGACACATTATCAACTCTCTCTAAACTTTCCTTGTCAATACAATTTAATCTTGATTCCCAACGGTTGGATCTTTTTTGTTGTAATTTTTCTAGCGAACCTTGTTTGGTCATCAAAAACGTTAATGGGTGGGGTGCAGAAACTACTTTTTTTTTTTTTTGTTAAAATTTCTCTTATGTTTTAATTTTCTTTCTTCCACTAAAATGCTCTTATCTTTTATTCCGGAACATTTAGATGTCTCTCATCAAAAGAGAAATACCTTTGGTTGGTCGTTGTCCATCCAGATGATGAGTTTTGATAACTTTAATTGTTGTGTTATTTTGATAAGTATATTTATAGTTTTGATAAACTTAGTTTGGCGTTGAAACACAATTTTCAGGTTATTTGGCATCGAGATGCAATTTCCAACAAACTTTTTATTCCTCTAAGCGTCGAACTGTGAGCTATGAAGTCCATTTTTCCCCCTTTAGTCTAGTTTAGCACTTGAGAGTTGTTCGAATTTTTCATGTTTAAGTACACTTGTAGGATTGTTTGTTCTGCTGAACTTTCTTGGCATGTTTTAAGTCATAAGTCGTGTTTTGAGCATTTATAAAATTAGTTGTGTTTATGCTCATTCTTGTTGCTTAATGTTGTGTTTTGCAGGTAATACTCAACTACTTGGTGGGTGACAAAGGTGTTGCAGAATTATGGTGACGTTTTCAAAGTTTTGGTCATAATGTTGTCAATAAGTTTCATGTTTAAACCCTTTACAGTGTGTTAGGCTAGGTAAAGTTCTCTTGTTTTGTAAACCTTCTTGAATGTTAGTTGAGTTTATGGCTTAGGATCGTTACAATAGTTCTTGTAATTTTTGAATTGTTGACATGAGGTTTGATAAGTCCTTGTAATTTTAGAATTGTTCATGAGCTTAATAGTTTGATATTATTAAATATGTGAATTTTGTTAAA

mRNA sequence

GTTTATGTCCATGAATTTTATGAATTTTTCATAACTTAGTTTAATTTTGTATTTATATTCAATAAAGTTTAATACTTTAGTTGTTTGTGTTAATTTGATGAGTTTAGTTGTTTATGTTCTTTGTACTGTATATATATGTTATTCAAACCTCAATTATCTTTGTTTTAGATGTTTTTGTTCTTCTGATTAGGTTTTTCTTTTGTGATGTTTCGTATCTTCAATTCCATGCTCTGTGACCACACTATTTCTCTATTTTTCGTGATAAAATAAAAGTAGAAAGATATCAATTAAATAATAACTTAAACAAAAAGGAAGTGAACGAAGACAGTACAGGTCTCACACTTGACTTTCGAGACTGGAGGATTTTGATTTTGTCTTTTGTTTCGCTCTGTTTGGATCGATCTTGCCCTCTGTCGATGGAATTTGTAGGGTTGTGTAAAAGGTTTGGATCTGTGACCAATTTTTCTGGAAATTCAGTACGAGTTTTAATTATTTAATTTTATGATTTGTCATTATGATGACTAATAGTGTTGATTTGACCGATGAGAAACACCATTTGTTCCTTGAATTCATGGAGGCATATTTTTTAAGCTAGATGTTTGTGCATTCAGTTCGTCCCTGCTCCAACAAGGAAAATTCCTCACACACAAAATTGCACAACCAAAGTCAGGTCGCCTCTCATGGCCACTCATATTTTGGCCAGGTTCATCCTGATTGCTCTTTCTTGATGAGTTGAGTTTTATCTATTTTCTGAATTATGCCTTGTAAATGCTCCTTTTGTTATTTTTGTTGCTTTCATTCATCGACACAATTTAAGGTTCTTCGACAAGACAGCTGGAAGAACATTAATTTTGACCCAACGGAATCTCGACCTAATTTATTGTATGATTACCAAGCCCTCTCGAGTAATCCATGGATACATCACTTCAGAGTTGCTCGCGAAAACAAAAAATGTTGCATGTAAAAGTCAAGCTATCAATTCAAGAGGAAGGAATTTGTTGCCATTCGGAGCAGCTAATAATTCAGGACCTATGGGCGGTTGCAACTCTGATTTGTCTCAGCAATATATCAACAACAATAAAGGTAATACTCAACTACTTGGTGGGTGACAAAGGTGTTGCAGAATTATGGTGACGTTTTCAAAGTTTTGGTCATAATGTTGTCAATAAGTTTCATGTTTAAACCCTTTACAGTGTGTTAGGCTAGGTAAAGTTCTCTTGTTTTGTAAACCTTCTTGAATGTTAGTTGAGTTTATGGCTTAGGATCGTTACAATAGTTCTTGTAATTTTTGAATTGTTGACATGAGGTTTGATAAGTCCTTGTAATTTTAGAATTGTTCATGAGCTTAATAGTTTGATATTATTAAATATGTGAATTTTGTTAAA

Coding sequence (CDS)

ATGATTACCAAGCCCTCTCGAGTAATCCATGGATACATCACTTCAGAGTTGCTCGCGAAAACAAAAAATGTTGCATGTAAAAGTCAAGCTATCAATTCAAGAGGAAGGAATTTGTTGCCATTCGGAGCAGCTAATAATTCAGGACCTATGGGCGGTTGCAACTCTGATTTGTCTCAGCAATATATCAACAACAATAAAGGTAATACTCAACTACTTGGTGGGTGA

Protein sequence

MITKPSRVIHGYITSELLAKTKNVACKSQAINSRGRNLLPFGAANNSGPMGGCNSDLSQQYINNNKGNTQLLGG
Homology
[Close]
BLAST of Tan0021756 vs. NCBI nr
Match: XP_023525276.1 (uncharacterized protein LOC111788927 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.7 bits (182), Expect = 3.7e-10
Identity = 37/47 (78.72%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 20  KTKNVACKSQAINSRGRNLLPFGAANNSGPMGGCNSDLSQQYINNNK 67
           K KNVACKS AI+SR RNLLPFG  NNSGPM  CNSDLSQ YI NNK
Sbjct: 155 KNKNVACKSPAISSRKRNLLPFGGDNNSGPMRACNSDLSQHYIYNNK 201

[Close]
BLAST of Tan0021756 vs. NCBI nr
Match: XP_023525277.1 (uncharacterized protein LOC111788927 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.7 bits (182), Expect = 3.7e-10
Identity = 37/47 (78.72%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 20  KTKNVACKSQAINSRGRNLLPFGAANNSGPMGGCNSDLSQQYINNNK 67
           K KNVACKS AI+SR RNLLPFG  NNSGPM  CNSDLSQ YI NNK
Sbjct: 110 KNKNVACKSPAISSRKRNLLPFGGDNNSGPMRACNSDLSQHYIYNNK 156

[Close]
BLAST of Tan0021756 vs. NCBI nr
Match: KAG6608473.1 (Cold-regulated protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 8.3e-10
Identity = 36/47 (76.60%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 20  KTKNVACKSQAINSRGRNLLPFGAANNSGPMGGCNSDLSQQYINNNK 67
           + KNVACKS AI+SR RNLLPFG  NNSGPM  CNSDLSQ YI NNK
Sbjct: 207 RNKNVACKSPAISSRKRNLLPFGGDNNSGPMRACNSDLSQHYIYNNK 253

[Close]
BLAST of Tan0021756 vs. NCBI nr
Match: XP_022982275.1 (uncharacterized protein LOC111481154 [Cucurbita maxima])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 36/47 (76.60%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 20  KTKNVACKSQAINSRGRNLLPFGAANNSGPMGGCNSDLSQQYINNNK 67
           K KNVACKS AI+SR RNLLPFG  NNSGPM  CNSDLS+ YI NNK
Sbjct: 207 KNKNVACKSPAISSRKRNLLPFGGDNNSGPMRACNSDLSRHYIYNNK 253

[Close]
BLAST of Tan0021756 vs. NCBI nr
Match: KAG7037801.1 (hypothetical protein SDJN02_01432 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.6 bits (174), Expect = 3.1e-09
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 20  KTKNVACKSQAINSRGRNLLPFGAANNSGPMGGCNSDLSQQYINNNK 67
           + K+VACKS AI+SR RNLLPFG  NNSGPM  CNSDLSQ YI NNK
Sbjct: 155 RNKSVACKSPAISSRKRNLLPFGGDNNSGPMRACNSDLSQHYIYNNK 201

[Close]
BLAST of Tan0021756 vs. ExPASy TrEMBL
Match: A0A6J1J278 (uncharacterized protein LOC111481154 OS=Cucurbita maxima OX=3661 GN=LOC111481154 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.2e-10
Identity = 36/47 (76.60%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 20  KTKNVACKSQAINSRGRNLLPFGAANNSGPMGGCNSDLSQQYINNNK 67
           K KNVACKS AI+SR RNLLPFG  NNSGPM  CNSDLS+ YI NNK
Sbjct: 207 KNKNVACKSPAISSRKRNLLPFGGDNNSGPMRACNSDLSRHYIYNNK 253

[Close]
BLAST of Tan0021756 vs. ExPASy TrEMBL
Match: A0A0A0L0A2 (Polyketide_cyc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G639810 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.4e-09
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 20  KTKNVACKSQAINSRGRNLLPFGAANNSGPMGGCNSDLSQQYINNNK 67
           K KNV CKSQAI SRGRN L  GAANNSGP+   +SDLSQQYI+NNK
Sbjct: 231 KNKNVVCKSQAIGSRGRNSLSLGAANNSGPIRASDSDLSQQYISNNK 277

[Close]
BLAST of Tan0021756 vs. ExPASy TrEMBL
Match: A0A1S3BU49 (uncharacterized protein LOC103493542 OS=Cucumis melo OX=3656 GN=LOC103493542 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 20  KTKNVACKSQAINSRGRNLLPFGAANNSGPMGGCNSDLSQQYINNNK 67
           K KNVACKSQAI SRGRN L   AANNSGP+   NSDLSQQYI++NK
Sbjct: 155 KNKNVACKSQAIGSRGRNSLSLEAANNSGPIRASNSDLSQQYISSNK 201

[Close]
BLAST of Tan0021756 vs. ExPASy TrEMBL
Match: A0A5D3D9F8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003390 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 20  KTKNVACKSQAINSRGRNLLPFGAANNSGPMGGCNSDLSQQYINNNK 67
           K KNVACKSQAI SRGRN L   AANNSGP+   NSDLSQQYI++NK
Sbjct: 110 KNKNVACKSQAIGSRGRNSLSLEAANNSGPIRASNSDLSQQYISSNK 156

[Close]
BLAST of Tan0021756 vs. ExPASy TrEMBL
Match: A0A6J1IM11 (uncharacterized protein LOC111476815 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111476815 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.9e-08
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 20  KTKNVACKSQAINSRGRNLLPFGAANNSGPMGGCNSDLSQQYINNNK 67
           K KNVACKSQAI S GRNL P GAANNS P+  C SDLS QYI++N+
Sbjct: 155 KNKNVACKSQAIGSGGRNLFPLGAANNSEPLRACGSDLSLQYISSNE 201

The following BLAST results are available for this feature:
BLAST of Tan0021756 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0021756 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023525276.13.7e-1078.72uncharacterized protein LOC111788927 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023525277.13.7e-1078.72uncharacterized protein LOC111788927 isoform X2 [Cucurbita pepo subsp. pepo][more]
KAG6608473.18.3e-1076.60Cold-regulated protein 27, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022982275.11.1e-0976.60uncharacterized protein LOC111481154 [Cucurbita maxima][more]
KAG7037801.13.1e-0974.47hypothetical protein SDJN02_01432 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Tan0021756 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J2785.2e-1076.60uncharacterized protein LOC111481154 OS=Cucurbita maxima OX=3661 GN=LOC111481154... [more]
A0A0A0L0A24.4e-0974.47Polyketide_cyc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G639... [more]
A0A1S3BU491.3e-0874.47uncharacterized protein LOC103493542 OS=Cucumis melo OX=3656 GN=LOC103493542 PE=... [more]
A0A5D3D9F81.3e-0874.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1IM112.9e-0870.21uncharacterized protein LOC111476815 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of Tan0021756 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0021756.1Tan0021756.1mRNA
Tan0021756.2Tan0021756.2mRNA
Tan0021756.3Tan0021756.3mRNA
Tan0021756.4Tan0021756.4mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042752 regulation of circadian rhythm
biological_process GO:0009409 response to cold