Tan0021698 (gene) Snake gourd v1

Overview


Name	Tan0021698
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	F-box protein interaction domain protein
Location	LG06: 10832668 .. 10833017 (-)
RNA-Seq Expression	Tan0021698
Synteny	Tan0021698

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTTTGGCTTGTGGCAAGTACAAGTCAAAGATGTGATGATACAATCTGGGTTACACAAGGATTTGAAGGGAAGACCAAGCTATGGTGTTCCTGAAAGGTTAAACGCTGATGGTGGTCCAACGGAGTCCAATGGTGGTTCCAGTAAAGGTTCTGAGAAGTCCAACATGACAGTCTGGAATTAGAAGAAGAAGAAAAAAGAAACTTCGTGCAAAAGAAAGGTTGTTGGGAAGGCGGGCAGTCTGGACACATGAAAAAGAATTGTCCTAACAGAGCAAGTTCGTCAAAAGGCTCTGGGTCGGATGCTAACATGGTCTCTTTCGTCAGAGGAGATGGGGACTTCTTCTGA

mRNA sequence

ATGAACTTTGGCTTGTGGCAAGTACAAGTCAAAGATGTGATGATACAATCTGGGTTACACAAGGATTTGAAGGGAAGACCAAGCTATGGTGTTCCTGAAAGGTTAAACGCTGATGGTGGTCCAACGGAGTCCAATGGTTGTTGGGAAGGCGGGCAGTCTGGACACATGAAAAAGAATTGTCCTAACAGAGCAAGTTCGTCAAAAGGCTCTGGGTCGGATGCTAACATGGTCTCTTTCGTCAGAGGAGATGGGGACTTCTTCTGA

Coding sequence (CDS)

ATGAACTTTGGCTTGTGGCAAGTACAAGTCAAAGATGTGATGATACAATCTGGGTTACACAAGGATTTGAAGGGAAGACCAAGCTATGGTGTTCCTGAAAGGTTAAACGCTGATGGTGGTCCAACGGAGTCCAATGGTTGTTGGGAAGGCGGGCAGTCTGGACACATGAAAAAGAATTGTCCTAACAGAGCAAGTTCGTCAAAAGGCTCTGGGTCGGATGCTAACATGGTCTCTTTCGTCAGAGGAGATGGGGACTTCTTCTGA

Protein sequence

MNFGLWQVQVKDVMIQSGLHKDLKGRPSYGVPERLNADGGPTESNGCWEGGQSGHMKKNCPNRASSSKGSGSDANMVSFVRGDGDFF

Homology

[Close]

BLAST of Tan0021698 vs. NCBI nr
Match: XP_022154929.1 (uncharacterized protein LOC111022075 [Momordica charantia])

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-10
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1   MNFGLWQVQVKDVMIQSGLHKDLKGRPSYGVPERLNADGGPTESN 46
           +NFGLWQVQVKDVMIQSGLHK LKGRPS    E+L+ DGGP ES+
Sbjct: 163 INFGLWQVQVKDVMIQSGLHKALKGRPSEDASEKLSGDGGPMESS 207

[Close]

BLAST of Tan0021698 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1   MNFGLWQVQVKDVMIQSGLHKDLKGRPSYGVPERLNADGGPTESNGCWEGGQSGHMKKN 60
           +NFGLWQVQVKDV+IQS LHK LKGRPS G  E+L+ DGGP ES+    GG S   KK+
Sbjct: 313 INFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPMESS----GGSSRGSKKS 367

[Close]

BLAST of Tan0021698 vs. NCBI nr
Match: KAF6150548.1 (hypothetical protein GIB67_030349 [Kingdonia uniflora])

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-07
Identity = 39/97 (40.21%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 1   MNFGLWQVQVKDVMIQSGLHKDLKGRP----SYGVPERLNADGGPTESN-----GCWEGG 60
           +NFGLWQ+ V+D++IQ GL K LKG+P    S      +    G    N      CW  G
Sbjct: 21  INFGLWQIHVQDILIQGGLRKALKGKPIPKTSVEGKNSVMVVSGKKSFNRFRKGTCWSCG 80

Query: 61  QSGHMKKNC----PNRASSSKGSGSDANMVSFVRGDG 85
           QSGH + +C     NRASS++GS +D N ++ V  +G
Sbjct: 81  QSGHYRSDCKAGKSNRASSARGSENDINKLATVTSNG 117

[Close]

BLAST of Tan0021698 vs. NCBI nr
Match: ESR45251.1 (hypothetical protein CICLE_v10003098mg [Citrus clementina] >GAY69372.1 hypothetical protein CUMW_271400 [Citrus unshiu])

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 1  MNFGLWQVQVKDVMIQSGLHKDLKGRPSYGVPERLNADGGPTESNGCWEGGQSGHMKKNC 60
          +NFGLWQVQVKDV+IQSGLHK LKG+PS   P   +  G  T+    WE  +  +  K+ 
Sbjct: 21 INFGLWQVQVKDVLIQSGLHKALKGKPS---PASNSGSGKTTKE--LWEKLEKLYRTKSI 78

Query: 61 PNR 64
           NR
Sbjct: 81 SNR 78

[Close]

BLAST of Tan0021698 vs. NCBI nr
Match: KAF5463231.1 (hypothetical protein F2P56_019161 [Juglans regia])

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 1  MNFGLWQVQVKDVMIQSGLHKDLKGRPS 29
          +NFGLWQVQVKDV+IQSGLHK LKGRP+
Sbjct: 21 INFGLWQVQVKDVLIQSGLHKALKGRPT 48

[Close]

BLAST of Tan0021698 vs. ExPASy TrEMBL
Match: A0A6J1DNQ5 (uncharacterized protein LOC111022075 OS=Momordica charantia OX=3673 GN=LOC111022075 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.8e-10
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1   MNFGLWQVQVKDVMIQSGLHKDLKGRPSYGVPERLNADGGPTESN 46
           +NFGLWQVQVKDVMIQSGLHK LKGRPS    E+L+ DGGP ES+
Sbjct: 163 INFGLWQVQVKDVMIQSGLHKALKGRPSEDASEKLSGDGGPMESS 207

[Close]

BLAST of Tan0021698 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.0e-10
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1   MNFGLWQVQVKDVMIQSGLHKDLKGRPSYGVPERLNADGGPTESNGCWEGGQSGHMKKN 60
           +NFGLWQVQVKDV+IQS LHK LKGRPS G  E+L+ DGGP ES+    GG S   KK+
Sbjct: 313 INFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPMESS----GGSSRGSKKS 367

[Close]

BLAST of Tan0021698 vs. ExPASy TrEMBL
Match: A0A7J7M716 (Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_030349 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 39/97 (40.21%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 1   MNFGLWQVQVKDVMIQSGLHKDLKGRP----SYGVPERLNADGGPTESN-----GCWEGG 60
           +NFGLWQ+ V+D++IQ GL K LKG+P    S      +    G    N      CW  G
Sbjct: 21  INFGLWQIHVQDILIQGGLRKALKGKPIPKTSVEGKNSVMVVSGKKSFNRFRKGTCWSCG 80

Query: 61  QSGHMKKNC----PNRASSSKGSGSDANMVSFVRGDG 85
           QSGH + +C     NRASS++GS +D N ++ V  +G
Sbjct: 81  QSGHYRSDCKAGKSNRASSARGSENDINKLATVTSNG 117

[Close]

BLAST of Tan0021698 vs. ExPASy TrEMBL
Match: V4T6T3 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003098mg PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.0e-05
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 1  MNFGLWQVQVKDVMIQSGLHKDLKGRPSYGVPERLNADGGPTESNGCWEGGQSGHMKKNC 60
          +NFGLWQVQVKDV+IQSGLHK LKG+PS   P   +  G  T+    WE  +  +  K+ 
Sbjct: 21 INFGLWQVQVKDVLIQSGLHKALKGKPS---PASNSGSGKTTKE--LWEKLEKLYRTKSI 78

Query: 61 PNR 64
           NR
Sbjct: 81 SNR 78

[Close]

BLAST of Tan0021698 vs. ExPASy TrEMBL
Match: A0A2H5QXN2 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_271400 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.0e-05
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 1  MNFGLWQVQVKDVMIQSGLHKDLKGRPSYGVPERLNADGGPTESNGCWEGGQSGHMKKNC 60
          +NFGLWQVQVKDV+IQSGLHK LKG+PS   P   +  G  T+    WE  +  +  K+ 
Sbjct: 21 INFGLWQVQVKDVLIQSGLHKALKGKPS---PASNSGSGKTTKE--LWEKLEKLYRTKSI 78

Query: 61 PNR 64
           NR
Sbjct: 81 SNR 78

The following BLAST results are available for this feature:

BLAST of Tan0021698 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0021698 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154929.1	5.7e-10	75.56	uncharacterized protein LOC111022075 [Momordica charantia]	[more]
XP_022139673.1	1.7e-09	64.41	uncharacterized protein LOC111010521 [Momordica charantia]	[more]
KAF6150548.1	3.5e-07	40.21	hypothetical protein GIB67_030349 [Kingdonia uniflora]	[more]
ESR45251.1	1.2e-04	50.79	hypothetical protein CICLE_v10003098mg [Citrus clementina] >GAY69372.1 hypotheti...	[more]
KAF5463231.1	1.6e-04	85.71	hypothetical protein F2P56_019161 [Juglans regia]	[more]

BLAST of Tan0021698 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNQ5	2.8e-10	75.56	uncharacterized protein LOC111022075 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CG82	8.0e-10	64.41	uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A7J7M716	1.7e-07	40.21	Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_030349 PE=4 SV=1	[more]
V4T6T3	6.0e-05	50.79	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003098mg PE=4 ...	[more]
A0A2H5QXN2	6.0e-05	50.79	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_271400 PE=4 SV=1	[more]

BLAST of Tan0021698 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..87
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 38..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021698.1	Tan0021698.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding