Tan0021623 (gene) Snake gourd v1

Overview
NameTan0021623
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: outer envelope membrane protein 7 .
LocationLG10: 7356026 .. 7356354 (-)
RNA-Seq ExpressionTan0021623
SyntenyTan0021623
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGGAACGACGAAGTTGAATGCGGCGAGGTCCGGCTTGGTGGTGATCGGAGCTCTGGCCTTCGGATACCTGAGCCTACAGCTCGTGTTCAAGCCCTACCTCGAGAAAGCTCAAAGCTCTCTTCAACATCCCGATTCTGAGCCCTCTACAGTTCCCAAAGACGCCATTTCAAAGCTTGATGATTAAGCTCCATCTTCGTTCTTTTGCCTCGGTATGTATAAATTTATCTTAGTGAGAATGACGGATTAGAGATTACATCGAAATTTCTCAGAGTTTCAAGAGATTTTGAGGGACGGAAGAAGGATCTATTGCTATTCGTTGATTGA

mRNA sequence

ATGAAGGGAACGACGAAGTTGAATGCGGCGAGGTCCGGCTTGGTGGTGATCGGAGCTCTGGCCTTCGGATACCTGAGCCTACAGCTCGTGTTCAAGCCCTACCTCGAGAAAGCTCAAAGCTCTCTTCAACATCCCGATTCTGAGCCCTCTACAATTACATCGAAATTTCTCAGAGTTTCAAGAGATTTTGAGGGACGGAAGAAGGATCTATTGCTATTCGTTGATTGA

Coding sequence (CDS)

ATGAAGGGAACGACGAAGTTGAATGCGGCGAGGTCCGGCTTGGTGGTGATCGGAGCTCTGGCCTTCGGATACCTGAGCCTACAGCTCGTGTTCAAGCCCTACCTCGAGAAAGCTCAAAGCTCTCTTCAACATCCCGATTCTGAGCCCTCTACAATTACATCGAAATTTCTCAGAGTTTCAAGAGATTTTGAGGGACGGAAGAAGGATCTATTGCTATTCGTTGATTGA

Protein sequence

MKGTTKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPDSEPSTITSKFLRVSRDFEGRKKDLLLFVD
Homology
BLAST of Tan0021623 vs. NCBI nr
Match: KGN57013.1 (hypothetical protein Csa_010432 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-19
Identity = 58/78 (74.36%), Postives = 63/78 (80.77%), Query Frame = 0

Query: 1  MKGTTKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPDSEPSTITS---KFL 60
          MK T KLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHP+ EPSTI       L
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPEPEPSTIPKDAISNL 60

Query: 61 RVSRDFEGRKKDLLLFVD 76
           VSRDF  ++KD LL ++
Sbjct: 61 DVSRDFGKQEKDALLLIE 78

BLAST of Tan0021623 vs. NCBI nr
Match: KAA0049387.1 (hypothetical protein E6C27_scaffold171G006320 [Cucumis melo var. makuwa] >TYK17172.1 hypothetical protein E5676_scaffold434G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-16
Identity = 54/78 (69.23%), Postives = 59/78 (75.64%), Query Frame = 0

Query: 1  MKGTTKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPDSEPSTITSKFLR-- 60
          MK T KLNAARSGLVVIGALAFGYLSLQ+ FKPYLEKAQS LQHP+ EPSTI    +   
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQVGFKPYLEKAQSYLQHPEPEPSTILKDAVSNP 60

Query: 61 -VSRDFEGRKKDLLLFVD 76
           VSRD    KKD LL ++
Sbjct: 61 DVSRDVGKLKKDRLLLIE 78

BLAST of Tan0021623 vs. NCBI nr
Match: KAG7018683.1 (hypothetical protein SDJN02_20554, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.3 bits (225), Expect = 3.9e-15
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 0

Query: 1  MKGTTKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPDSEPSTI 53
          MK   KLNA RSG+VVIGALAFGYLSL LVFKPYLEKAQSSLQHPDSEPSTI
Sbjct: 34 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPSTI 85

BLAST of Tan0021623 vs. NCBI nr
Match: KAG6582279.1 (hypothetical protein SDJN03_22281, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.8 bits (216), Expect = 4.3e-14
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 0

Query: 1  MKGTTKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPDSEPSTI 53
          MK   KLNA RSG+VVIGALAFGYLSL LVFKPYLEKAQ SLQHP+SEPSTI
Sbjct: 11 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQGSLQHPNSEPSTI 62

BLAST of Tan0021623 vs. NCBI nr
Match: EXB55018.1 (hypothetical protein L484_007349 [Morus notabilis])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1  MKGTTKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPDSEPSTITSKF 57
          M+   K+NA RSG+VV+GA+AFGYL+L L FKP+LEKAQ S++H  S+PS+ +S +
Sbjct: 1  MRDRRKMNAMRSGVVVVGAMAFGYLTLYLGFKPFLEKAQLSVEHSQSQPSSSSSNY 56

BLAST of Tan0021623 vs. ExPASy TrEMBL
Match: A0A0A0L5N1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149930 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.4e-20
Identity = 58/78 (74.36%), Postives = 63/78 (80.77%), Query Frame = 0

Query: 1  MKGTTKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPDSEPSTITS---KFL 60
          MK T KLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHP+ EPSTI       L
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPEPEPSTIPKDAISNL 60

Query: 61 RVSRDFEGRKKDLLLFVD 76
           VSRDF  ++KD LL ++
Sbjct: 61 DVSRDFGKQEKDALLLIE 78

BLAST of Tan0021623 vs. ExPASy TrEMBL
Match: A0A5A7U4W2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00160 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.8e-17
Identity = 54/78 (69.23%), Postives = 59/78 (75.64%), Query Frame = 0

Query: 1  MKGTTKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPDSEPSTITSKFLR-- 60
          MK T KLNAARSGLVVIGALAFGYLSLQ+ FKPYLEKAQS LQHP+ EPSTI    +   
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQVGFKPYLEKAQSYLQHPEPEPSTILKDAVSNP 60

Query: 61 -VSRDFEGRKKDLLLFVD 76
           VSRD    KKD LL ++
Sbjct: 61 DVSRDVGKLKKDRLLLIE 78

BLAST of Tan0021623 vs. ExPASy TrEMBL
Match: W9R337 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007349 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.9e-09
Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1  MKGTTKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPDSEPSTITSKF 57
          M+   K+NA RSG+VV+GA+AFGYL+L L FKP+LEKAQ S++H  S+PS+ +S +
Sbjct: 1  MRDRRKMNAMRSGVVVVGAMAFGYLTLYLGFKPFLEKAQLSVEHSQSQPSSSSSNY 56

BLAST of Tan0021623 vs. ExPASy TrEMBL
Match: A0A4D9A3A6 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_033849 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 1  MKGTTKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPDSEPST 52
          M+GT K NA RSGLVVIGALAFGYL+L L FKPYLEKAQ   QH  +  S+
Sbjct: 1  MRGTAKANAMRSGLVVIGALAFGYLTLHLGFKPYLEKAQLEQQHQSAAASS 51

BLAST of Tan0021623 vs. ExPASy TrEMBL
Match: A0A2P5E3N7 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_006040 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.0e-08
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 1  MKGTTKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPDSEPSTITS 55
          M   TK+NA RSG+VV+GALAFGYL+LQL FKP+LEKAQ +L H +   S+ +S
Sbjct: 1  MDHRTKMNAMRSGVVVVGALAFGYLTLQLGFKPFLEKAQVNLDHSEKPTSSSSS 54

BLAST of Tan0021623 vs. TAIR 10
Match: AT5G19151.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-07
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 0

Query: 1  MKGTTKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKA-------QSSLQHPDSE 49
          MK T   NA RS +VV+G+LAFGYLSL+L +KP+LEKA       QSS QH   +
Sbjct: 1  MKRTVMDNAIRSSVVVLGSLAFGYLSLELGYKPFLEKAEQYERSLQSSQQHQQQD 55

BLAST of Tan0021623 vs. TAIR 10
Match: AT3G63160.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: outer envelope membrane protein 7 (TAIR:AT3G52420.1); Has 26 Blast hits to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 5.6e-04
Identity = 18/42 (42.86%), Postives = 29/42 (69.05%), Query Frame = 0

Query: 11 RSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPDSEPSTI 53
          ++  VV+G LA G+L+++LVFKP  +K  SS    DS+ +T+
Sbjct: 22 QTATVVVGVLAVGWLAIELVFKPLFKKLSSSKDKSDSDDATV 63

BLAST of Tan0021623 vs. TAIR 10
Match: AT3G52420.1 (outer envelope membrane protein 7 )

HSP 1 Score: 40.4 bits (93), Expect = 7.3e-04
Identity = 16/41 (39.02%), Postives = 29/41 (70.73%), Query Frame = 0

Query: 6  KLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPD 47
          K + A+   VV+ A+A G+L++++ FKP+L+K +SS+   D
Sbjct: 3  KTSGAKQATVVVAAMALGWLAIEIAFKPFLDKFRSSIDKSD 43

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN57013.11.5e-1974.36hypothetical protein Csa_010432 [Cucumis sativus][more]
KAA0049387.11.2e-1669.23hypothetical protein E6C27_scaffold171G006320 [Cucumis melo var. makuwa] >TYK171... [more]
KAG7018683.13.9e-1588.46hypothetical protein SDJN02_20554, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6582279.14.3e-1484.62hypothetical protein SDJN03_22281, partial [Cucurbita argyrosperma subsp. sorori... [more]
EXB55018.11.2e-0857.14hypothetical protein L484_007349 [Morus notabilis][more]
Match NameE-valueIdentityDescription
A0A0A0L5N17.4e-2074.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149930 PE=4 SV=1[more]
A0A5A7U4W25.8e-1769.23Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
W9R3375.9e-0957.14Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007349 PE=4 SV=1[more]
A0A4D9A3A61.3e-0868.63Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_033849 PE=4 SV=1[more]
A0A2P5E3N75.0e-0861.11Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_006040 PE... [more]
Match NameE-valueIdentityDescription
AT5G19151.11.1e-0754.55unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G63160.15.6e-0442.86FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT3G52420.17.3e-0439.02outer envelope membrane protein 7 [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038944Outer envelope membrane protein 7-likePANTHERPTHR33982OUTER ENVELOPE MEMBRANE PROTEIN 7-RELATEDcoord: 1..53
NoneNo IPR availablePANTHERPTHR33982:SF4OS05G0532800 PROTEINcoord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0021623.1Tan0021623.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane