Tan0021605 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCATCGCGAGGCTGTCTCTGTTTCCGTTCAGAGATTTCGTTTCTTCATTTCGCCCTTCGAGAAGGGAAAGGGAGATTCCTTTCTCTCTCTCTCTCTGCGAGCCTCTTTGAAGCCATTGAAGAAGAAGGGCTTTCTGAAAGCTTCTTGATCTGAGAGACGCATCGCAGAGAGAGATCGATCCTCGTGTACTACATTTCTTGCTTGCGATTCTTCGCCTGAAGAAAGGAGACGATAAATTACAGCGCGATTTTGAGTCAAATGGCGGTTTCTAGAACATCTTTTGGATTCGTGGCTGCCGCCGTGCTCGTCTTCGCCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCCCTCCCACCAGCGACGGTTAGTTCTCTTTCTTTATGTTTTATTTTGCATTTCTGTTCCAGATCTGTGTGGAATGCTTTGATCTCTTGCATTTGCTCGTTTTGTTTGGTTATTCTTTGTTTTCTGAGGAGTTTCGGTTTCCGAGTTTACTAAAATTGTGAAAATTCTGTTTCAGTTTACGTTTATGAACTGCGACTTAACCTATGCTCAAATCTCAATTTATTGCGCGTTTTCTTCTTGGATCTATTTTCTCATTTTCGCCAAAGGTCATTGACATCGATCCGAGGACCAATGTCAAGAAATTTAAAAAAATATAGGAGCTATGTTCATGTAATCATAAAAATAAAAAAAAAGTTTCTCAATAGTTCCAATCATTATTAAATGTCTCATTCGTAAGTGTAATTAAACCAATTGTCATTATTATATAATCACATTTTCTATTTGTCGGCAAGACTTTTACTTTTTAGGGCAAAGATATGTGGCTTTACTTCTTTTTCTGCACCTTTTAAATTTATCAAGAAATTTTGATAGTTGAAATTTATTTTAAATAGTTGTTACGAAAATTTCCAAGGAAAGTTGGGTTGAAATTGCTCTTAGATTTCTGAATGAACAACTAATTGAAATCTTTGAGATGGGATTTGACAGGGACATCCATAGACCAAGGGATAGCTTATATCTTAATGTTGGTGGCATTGGCACTTACATATCTCATCCACAATGCTGATTTATCTCACAGCTTCTAAAAGGATTATATTTGTATCAAAAAAGCATTTGGCGAACCAATCTCTTTTTGATGGATCTAAGGGGAAGGGAATTTAGTTAGAAATGAAAATGGGTTTTGAGGGAATTGGATTCTTTTGCATGTTGTAGTGTTCCTTTGGAGTTTCTGTTTTGGTATTATTTATGATGATGAGGAGTCTGTTGATGCTCTTGCATTTCTATGTACAGTGTCCTGATTTTGAATGAGATTTGTTTGTTGGGTTGGAGGTTA CCCATCGCGAGGCTGTCTCTGTTTCCGTTCAGAGATTTCGTTTCTTCATTTCGCCCTTCGAGAAGGGAAAGGGAGATTCCTTTCTCTCTCTCTCTCTGCGAGCCTCTTTGAAGCCATTGAAGAAGAAGGGCTTTCTGAAAGCTTCTTGATCTGAGAGACGCATCGCAGAGAGAGATCGATCCTCGTGTACTACATTTCTTGCTTGCGATTCTTCGCCTGAAGAAAGGAGACGATAAATTACAGCGCGATTTTGAGTCAAATGGCGGTTTCTAGAACATCTTTTGGATTCGTGGCTGCCGCCGTGCTCGTCTTCGCCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCCCTCCCACCAGCGACGGGACATCCATAGACCAAGGGATAGCTTATATCTTAATGTTGGTGGCATTGGCACTTACATATCTCATCCACAATGCTGATTTATCTCACAGCTTCTAAAAGGATTATATTTGTATCAAAAAAGCATTTGGCGAACCAATCTCTTTTTGATGGATCTAAGGGGAAGGGAATTTAGTTAGAAATGAAAATGGGTTTTGAGGGAATTGGATTCTTTTGCATGTTGTAGTGTTCCTTTGGAGTTTCTGTTTTGGTATTATTTATGATGATGAGGAGTCTGTTGATGCTCTTGCATTTCTATGTACAGTGTCCTGATTTTGAATGAGATTTGTTTGTTGGGTTGGAGGTTA ATGGCGGTTTCTAGAACATCTTTTGGATTCGTGGCTGCCGCCGTGCTCGTCTTCGCCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCCCTCCCACCAGCGACGGGACATCCATAGACCAAGGGATAGCTTATATCTTAATGTTGGTGGCATTGGCACTTACATATCTCATCCACAATGCTGATTTATCTCACAGCTTCTAA MAVSRTSFGFVAAAVLVFAIFLPVAQPQSLAPAPPPTSDGTSIDQGIAYILMLVALALTYLIHNADLSHSF Homology
BLAST of Tan0021605 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 3.8e-15 Identity = 44/67 (65.67%), Postives = 48/67 (71.64%), Query Frame = 0
BLAST of Tan0021605 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 1.5e-14 Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 0
BLAST of Tan0021605 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 3.2e-14 Identity = 44/68 (64.71%), Postives = 49/68 (72.06%), Query Frame = 0
BLAST of Tan0021605 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 2.3e-12 Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 0
BLAST of Tan0021605 vs. NCBI nr
Match: XP_022931316.1 (arabinogalactan peptide 22-like [Cucurbita moschata]) HSP 1 Score: 126.7 bits (317), Expect = 7.9e-26 Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = 0
BLAST of Tan0021605 vs. NCBI nr
Match: XP_022985432.1 (arabinogalactan peptide 20 [Cucurbita maxima]) HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25 Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 0
BLAST of Tan0021605 vs. NCBI nr
Match: KAG6577157.1 (Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015155.1 Arabinogalactan peptide 20, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 124.4 bits (311), Expect = 3.9e-25 Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 0
BLAST of Tan0021605 vs. NCBI nr
Match: XP_038882280.1 (arabinogalactan protein 22-like [Benincasa hispida]) HSP 1 Score: 117.5 bits (293), Expect = 4.8e-23 Identity = 60/71 (84.51%), Postives = 66/71 (92.96%), Query Frame = 0
BLAST of Tan0021605 vs. NCBI nr
Match: XP_022136454.1 (arabinogalactan peptide 22-like [Momordica charantia]) HSP 1 Score: 117.5 bits (293), Expect = 4.8e-23 Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 0
BLAST of Tan0021605 vs. ExPASy TrEMBL
Match: A0A6J1ETC6 (arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111437536 PE=4 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 3.8e-26 Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = 0
BLAST of Tan0021605 vs. ExPASy TrEMBL
Match: A0A6J1J4V7 (arabinogalactan peptide 20 OS=Cucurbita maxima OX=3661 GN=LOC111483439 PE=4 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 6.5e-26 Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 0
BLAST of Tan0021605 vs. ExPASy TrEMBL
Match: A0A6J1C4C2 (arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111008162 PE=4 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23 Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 0
BLAST of Tan0021605 vs. ExPASy TrEMBL
Match: A0A6J1FMT5 (arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111446885 PE=4 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 2.6e-22 Identity = 62/70 (88.57%), Postives = 63/70 (90.00%), Query Frame = 0
BLAST of Tan0021605 vs. ExPASy TrEMBL
Match: A0A0A0KZS8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G051380 PE=4 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 4.8e-21 Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 0
BLAST of Tan0021605 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 ) HSP 1 Score: 81.6 bits (200), Expect = 2.7e-16 Identity = 44/67 (65.67%), Postives = 48/67 (71.64%), Query Frame = 0
BLAST of Tan0021605 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 ) HSP 1 Score: 79.7 bits (195), Expect = 1.0e-15 Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 0
BLAST of Tan0021605 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 ) HSP 1 Score: 78.6 bits (192), Expect = 2.3e-15 Identity = 44/68 (64.71%), Postives = 49/68 (72.06%), Query Frame = 0
BLAST of Tan0021605 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 ) HSP 1 Score: 72.4 bits (176), Expect = 1.6e-13 Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|