Tan0021594 (gene) Snake gourd v1

Overview
NameTan0021594
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG01: 5278793 .. 5279073 (+)
RNA-Seq ExpressionTan0021594
SyntenyTan0021594
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACAGCGGATAAATTCCCTGTCCTAGGGCGCCGCGCGCAACGTGTCGGCGATCTATTCGACAAAACAACTTCCAAACGCCTTTTTTCTATTTCCACTTCTCCTGGATTTGGCGAGTACGAGGAAAGCTCAGCTCCACGCGAGGGGGAGCGCGTGAAACAACGCGCTCTGTCGTTTCGACACGTACGCCAAATCGCAGACTCGGGATTCTCTGTCGGAGCCCAACGGGTCTCGGATTGATTTACCAAAACGACATGTCGGCTGGGGAGCGCGAGTAG

mRNA sequence

ATGGCAACAGCGGATAAATTCCCTGTCCTAGGGCGCCGCGCGCAACGTGTCGGCGATCTATTCGACAAAACAACTTCCAAACGCCTTTTTTCTATTTCCACTTCTCCTGGATTTGGGGGAGCGCGTGAAACAACGCGCTCTGTCGTTTCGACACGTACGCCAAATCGCAGACTCGGGATTCTCTGTCGGAGCCCAACGGGTCTCGGATTGATTTACCAAAACGACATGTCGGCTGGGGAGCGCGAGTAG

Coding sequence (CDS)

ATGGCAACAGCGGATAAATTCCCTGTCCTAGGGCGCCGCGCGCAACGTGTCGGCGATCTATTCGACAAAACAACTTCCAAACGCCTTTTTTCTATTTCCACTTCTCCTGGATTTGGGGGAGCGCGTGAAACAACGCGCTCTGTCGTTTCGACACGTACGCCAAATCGCAGACTCGGGATTCTCTGTCGGAGCCCAACGGGTCTCGGATTGATTTACCAAAACGACATGTCGGCTGGGGAGCGCGAGTAG

Protein sequence

MATADKFPVLGRRAQRVGDLFDKTTSKRLFSISTSPGFGGARETTRSVVSTRTPNRRLGILCRSPTGLGLIYQNDMSAGERE
Homology
[Close]
BLAST of Tan0021594 vs. NCBI nr
Match: KAG6600251.1 (hypothetical protein SDJN03_05484, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 3.7e-11
Identity = 46/82 (56.10%), Postives = 50/82 (60.98%), Query Frame = 0 

Query: 1   MATADKFPVLGRRAQRVGDLFDKTTSKRLFSISTSPGFGGAR-----------ETTRSVV 60
           M TA+KFP+L RR  RVGDLFDKTTS RL + ST PGFG              E+TR VV
Sbjct: 25  METANKFPLLWRRELRVGDLFDKTTSMRLSTSSTPPGFGEYEESSAPLEKERVESTRDVV 84

Query: 61  STRTPNRRLGILCRSPTGLGLI 72
             RT N RLGI CR PT   LI
Sbjct: 85  LKRTTNHRLGIPCRRPTDSDLI 106

[Close]
BLAST of Tan0021594 vs. NCBI nr
Match: TYK29421.1 (hypothetical protein E5676_scaffold655G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-07
Identity = 33/44 (75.00%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 1  MATADKFPVLGRRAQRVGDLFDKTTSKRLFSISTSPGFGGARET 45
          MAT DKF  LG R QRVGDLFDKTTSKRLF ISTS GFG   E+
Sbjct: 37 MATGDKFSFLGHREQRVGDLFDKTTSKRLFVISTSSGFGAYEES 80

[Close]
BLAST of Tan0021594 vs. ExPASy TrEMBL
Match: A0A0A0KWH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G181210 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.4e-16
Identity = 54/93 (58.06%), Postives = 60/93 (64.52%), Query Frame = 0 

Query: 1  MATADKFPVLGRRAQRVGDLFDKTTSKRLFSISTSPGFGGARET-----------TRSVV 60
          MATADKF  LG R +RVGDLFDKTTS+ LF IST  GFG   ET           T S +
Sbjct: 1  MATADKFSFLGHRERRVGDLFDKTTSEPLFVISTPSGFGAYEETSTPRLIKRVNSTSSQL 60

Query: 61 STRTPNRRLGILCRSPTGLGLIYQNDMSAGERE 83
           TR  NR LGILCR+ T L LIY +DMS+GE E
Sbjct: 61 LTRMVNRGLGILCRTLTSLRLIYHSDMSSGESE 93

[Close]
BLAST of Tan0021594 vs. ExPASy TrEMBL
Match: A0A5D3E1F8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00120 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.1e-08
Identity = 33/44 (75.00%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 1  MATADKFPVLGRRAQRVGDLFDKTTSKRLFSISTSPGFGGARET 45
          MAT DKF  LG R QRVGDLFDKTTSKRLF ISTS GFG   E+
Sbjct: 37 MATGDKFSFLGHREQRVGDLFDKTTSKRLFVISTSSGFGAYEES 80

The following BLAST results are available for this feature:
BLAST of Tan0021594 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0021594 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600251.13.7e-1156.10hypothetical protein SDJN03_05484, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK29421.11.5e-0775.00hypothetical protein E5676_scaffold655G00120 [Cucumis melo var. makuwa][more]
BLAST of Tan0021594 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWH42.4e-1658.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G181210 PE=4 SV=1[more]
A0A5D3E1F87.1e-0875.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Tan0021594 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0021594.1Tan0021594.1mRNA