Tan0021541 (gene) Snake gourd v1

Overview


Name	Tan0021541
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative
Location	LG02: 1933355 .. 1934271 (+)
RNA-Seq Expression	Tan0021541
Synteny	Tan0021541

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTATCGGACAGGTATAGTTGCCGCGTAAAACTTTGTTGGGATATGACCACTAAACCGTAGCTTTATCACATTGCTATATAAAATGGCCGTCTTTCCCACCAGCAATTTCCCTTCAACAAAGGAAAAAAAAAACACCCCTTCCCCATGAAGAAAACAGGGCTATTCGCCGCCTCCGTCGCCGCCGCCTCCGCCACCGCTCTGTCAGCTCCGCCGTCATCCGCCGGCGTCCTTAAAACCACCTTCTCCCATCAGGTAAAACATACAAAAATATTCTCATTTCTCACAGACCCATTTATAATCAAAGCTCTTCAGAAACAAAATTAAGCAAAATTCTTGAGGAATAACCGATGTGGGACGAATTTCAGGAACAGGTGAACAGAGACGAGGAAATTAGTCCGTCGAGAAGATCGCCGCCGTCGACGGCGGCGGATCAGTTTGCTCCGAGATTTGATGGGTTGCGATTCATTGAAACTCTGATCACTGCTCATAGATGATAAGCTTTGGATAATTTGGCGATAAATGGCCTCCATCTCTTCTCCAAAAGCCCATCTCTCTGTTTTTTTTTTTTTTGGTCTGTCTTATTATTAAAAGATCAAATCACTGTGAGGAAAAAGCCCCAATTGTGTATTGCAAGTGGTGGGTTTCGTTTTGTTCCTTCTTACTTTCAAAAAAAAAAAAAGAAGCCTGTTCTCGTAACTTGATCTTATAATGGGATGTAATGAAATGAAATGATGTAACGACATAGTGTATTTTACTATGGTAATTTTGTGGATTTTTTTAATTATATAATATGATAAAAAAAGATGTAATGAAATGTAATATGTAATGAGACTGTATTTTACTATGGTATTTTTGTGGATTTTTTTTATATAATATGATAAAAAAGGATGTCAGTGGTGTATTGGTAATGACAAA

mRNA sequence

CCCTATCGGACAGGTATAGTTGCCGCGTAAAACTTTGTTGGGATATGACCACTAAACCGTAGCTTTATCACATTGCTATATAAAATGGCCGTCTTTCCCACCAGCAATTTCCCTTCAACAAAGGAAAAAAAAAACACCCCTTCCCCATGAAGAAAACAGGGCTATTCGCCGCCTCCGTCGCCGCCGCCTCCGCCACCGCTCTGTCAGCTCCGCCGTCATCCGCCGGCGTCCTTAAAACCACCTTCTCCCATCAGGAACAGGTGAACAGAGACGAGGAAATTAGTCCGTCGAGAAGATCGCCGCCGTCGACGGCGGCGGATCAGTTTGCTCCGAGATTTGATGGGTTGCGATTCATTGAAACTCTGATCACTGCTCATAGATGATAAGCTTTGGATAATTTGGCGATAAATGGCCTCCATCTCTTCTCCAAAAGCCCATCTCTCTGTTTTTTTTTTTTTTGGTCTGTCTTATTATTAAAAGATCAAATCACTGTGAGGAAAAAGCCCCAATTGTGTATTGCAAGTGGTGGGTTTCGTTTTGTTCCTTCTTACTTTCAAAAAAAAAAAAAGAAGCCTGTTCTCGTAACTTGATCTTATAATGGGATGTAATGAAATGAAATGATGTAACGACATAGTGTATTTTACTATGGTAATTTTGTGGATTTTTTTAATTATATAATATGATAAAAAAAGATGTAATGAAATGTAATATGTAATGAGACTGTATTTTACTATGGTATTTTTGTGGATTTTTTTTATATAATATGATAAAAAAGGATGTCAGTGGTGTATTGGTAATGACAAA

Coding sequence (CDS)

ATGAAGAAAACAGGGCTATTCGCCGCCTCCGTCGCCGCCGCCTCCGCCACCGCTCTGTCAGCTCCGCCGTCATCCGCCGGCGTCCTTAAAACCACCTTCTCCCATCAGGAACAGGTGAACAGAGACGAGGAAATTAGTCCGTCGAGAAGATCGCCGCCGTCGACGGCGGCGGATCAGTTTGCTCCGAGATTTGATGGGTTGCGATTCATTGAAACTCTGATCACTGCTCATAGATGA

Protein sequence

MKKTGLFAASVAAASATALSAPPSSAGVLKTTFSHQEQVNRDEEISPSRRSPPSTAADQFAPRFDGLRFIETLITAHR

Homology

[Close]

BLAST of Tan0021541 vs. NCBI nr
Match: XP_038888462.1 (uncharacterized protein LOC120078298 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 72/79 (91.14%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSAGVLKTTFSHQEQVNRDEEI-SPSRRSPPSTAADQ 60
          MKKTGLFAASVAAASATALSAPPSSAG+LKTTFSHQEQV RD+EI +PSRRSPPSTAA+Q
Sbjct: 1  MKKTGLFAASVAAASATALSAPPSSAGILKTTFSHQEQVTRDQEITTPSRRSPPSTAAEQ 60

Query: 61 FAPRFDGLRFIETLITAHR 79
          FAPRFDGLRFIETL+TAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of Tan0021541 vs. NCBI nr
Match: XP_023554654.1 (uncharacterized protein LOC111811842 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 71/79 (89.87%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSAGVLKTTFSHQEQV-NRDEEISPSRRSPPSTAADQ 60
          MKKTGLFAASVAAASATALSAP SS GVLKTTFSHQE+V +RDEE SPSR SPPSTAADQ
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSTGVLKTTFSHQEKVISRDEETSPSRISPPSTAADQ 62

Query: 61 FAPRFDGLRFIETLITAHR 79
          FAPRFDGLRFIETL+TAHR
Sbjct: 63 FAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Tan0021541 vs. NCBI nr
Match: XP_022969313.1 (uncharacterized protein LOC111468357 [Cucurbita maxima])

HSP 1 Score: 129.0 bits (323), Expect = 1.7e-26
Identity = 72/79 (91.14%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSAGVLKTTFSHQEQV-NRDEEISPSRRSPPSTAADQ 60
          MKKTGLFAASVAAASATALSAP SSAGVLKTTFSHQE+V  RDEE SPSR SPPSTAADQ
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVIIRDEESSPSRISPPSTAADQ 62

Query: 61 FAPRFDGLRFIETLITAHR 79
          FAPRFDGLRFIETL+TAHR
Sbjct: 63 FAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Tan0021541 vs. NCBI nr
Match: XP_022952670.1 (uncharacterized protein LOC111455296 [Cucurbita moschata] >KAG6572361.1 hypothetical protein SDJN03_29089, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011972.1 hypothetical protein SDJN02_26880 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.0 bits (323), Expect = 1.7e-26
Identity = 71/79 (89.87%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSAGVLKTTFSHQEQV-NRDEEISPSRRSPPSTAADQ 60
          MKKTGLFAASVAAASATALSAP SSAGVLKTTFSHQE+V +RDEE SPSR SPPSTA DQ
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAPDQ 62

Query: 61 FAPRFDGLRFIETLITAHR 79
          FAPRFDGLRFIETL+TAHR
Sbjct: 63 FAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Tan0021541 vs. NCBI nr
Match: KGN43613.1 (hypothetical protein Csa_020428 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 2.5e-25
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSAGVLKTTFSHQEQVNRDEE-ISPSRRSPPSTAADQ 60
          MKKTGLFAASVAAASATALSAPP+S G+LKT FS QE+V RDEE  +P+RRSPPSTAADQ
Sbjct: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60

Query: 61 FAPRFDGLRFIETLITAHR 79
          FAPRFDGLRFIETL+TAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of Tan0021541 vs. ExPASy TrEMBL
Match: A0A6J1I0M0 (uncharacterized protein LOC111468357 OS=Cucurbita maxima OX=3661 GN=LOC111468357 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.5e-27
Identity = 72/79 (91.14%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSAGVLKTTFSHQEQV-NRDEEISPSRRSPPSTAADQ 60
          MKKTGLFAASVAAASATALSAP SSAGVLKTTFSHQE+V  RDEE SPSR SPPSTAADQ
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVIIRDEESSPSRISPPSTAADQ 62

Query: 61 FAPRFDGLRFIETLITAHR 79
          FAPRFDGLRFIETL+TAHR
Sbjct: 63 FAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Tan0021541 vs. ExPASy TrEMBL
Match: A0A6J1GMF4 (uncharacterized protein LOC111455296 OS=Cucurbita moschata OX=3662 GN=LOC111455296 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.5e-27
Identity = 71/79 (89.87%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSAGVLKTTFSHQEQV-NRDEEISPSRRSPPSTAADQ 60
          MKKTGLFAASVAAASATALSAP SSAGVLKTTFSHQE+V +RDEE SPSR SPPSTA DQ
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAPDQ 62

Query: 61 FAPRFDGLRFIETLITAHR 79
          FAPRFDGLRFIETL+TAHR
Sbjct: 63 FAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Tan0021541 vs. ExPASy TrEMBL
Match: A0A0A0K2C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047970 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSAGVLKTTFSHQEQVNRDEE-ISPSRRSPPSTAADQ 60
          MKKTGLFAASVAAASATALSAPP+S G+LKT FS QE+V RDEE  +P+RRSPPSTAADQ
Sbjct: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60

Query: 61 FAPRFDGLRFIETLITAHR 79
          FAPRFDGLRFIETL+TAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of Tan0021541 vs. ExPASy TrEMBL
Match: A0A5D3C7A0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003450 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSAGVLKTTFSHQEQV-NRDEEI-SPSRRSPPSTAAD 60
          MKKTGLFAASVAAASATALSAPPSS   LKT FSHQE+V  RDEEI +P+RRSPPSTA+D
Sbjct: 1  MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD 60

Query: 61 QFAPRFDGLRFIETLITAHR 79
          QFAPRFDGLRFIETL+TAHR
Sbjct: 61 QFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of Tan0021541 vs. ExPASy TrEMBL
Match: E0CTD2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 53/82 (64.63%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPSSAGVL---KTTFSHQEQV-NRDEEISPSRRSPPSTA 60
          MKK+G FAASVAAASATA+SA PSS+G L   K   S  E V  +D E S S+R   S++
Sbjct: 1  MKKSGFFAASVAAASATAISA-PSSSGFLCNSKIQLSRDEAVAGKDIENSESQR---SSS 60

Query: 61 ADQFAPRFDGLRFIETLITAHR 79
          AD+FAPRFDGLRFIETL+TAHR
Sbjct: 61 ADRFAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of Tan0021541 vs. TAIR 10
Match: AT4G28290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 5.4e-10
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 1  MKKTGLFAASVA-AASATALSAPPSSAGVLKTTFSHQEQVNRDEEISPSRRSPPSTAAD- 60
          MKKTG+ AAS++ AASATA+SA  ++  V   +FS  E     +E    +R    ++ D 
Sbjct: 1  MKKTGIIAASISVAASATAISAGSTNTSV---SFSSPESNLSRQEAKEKQRKKKGSSEDG 60

Query: 61 ---QFAPRFDGLRFIETLITAHR 79
             +FAPRFDGLRFIETL+TAHR
Sbjct: 61 GDEKFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of Tan0021541 vs. TAIR 10
Match: AT5G42110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 3.4e-04
Identity = 33/82 (40.24%), Postives = 39/82 (47.56%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSA----PPSSAGVLKTTFSHQEQVNRDEEISPSRRSPPSTA 60
          MK +    ASV A S  ALS+    PP S  V +                    S  +  
Sbjct: 1  MKVSSGVVASVIAVSTAALSSSSILPPVSPKVWE--------------------SRKTNG 60

Query: 61 ADQFAPRFDGLRFIETLITAHR 79
          +D F PRFDGLRFIETL+TAHR
Sbjct: 61 SDNFEPRFDGLRFIETLVTAHR 62

The following BLAST results are available for this feature:

BLAST of Tan0021541 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0021541 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888462.1	1.4e-28	91.14	uncharacterized protein LOC120078298 [Benincasa hispida]	[more]
XP_023554654.1	1.3e-26	89.87	uncharacterized protein LOC111811842 [Cucurbita pepo subsp. pepo]	[more]
XP_022969313.1	1.7e-26	91.14	uncharacterized protein LOC111468357 [Cucurbita maxima]	[more]
XP_022952670.1	1.7e-26	89.87	uncharacterized protein LOC111455296 [Cucurbita moschata] >KAG6572361.1 hypothet...	[more]
KGN43613.1	2.5e-25	84.81	hypothetical protein Csa_020428 [Cucumis sativus]	[more]

BLAST of Tan0021541 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I0M0	8.5e-27	91.14	uncharacterized protein LOC111468357 OS=Cucurbita maxima OX=3661 GN=LOC111468357...	[more]
A0A6J1GMF4	8.5e-27	89.87	uncharacterized protein LOC111455296 OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]
A0A0A0K2C1	1.2e-25	84.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047970 PE=4 SV=1	[more]
A0A5D3C7A0	1.0e-24	85.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E0CTD2	1.3e-11	64.63	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=...	[more]

BLAST of Tan0021541 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28290.1	5.4e-10	49.40	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G42110.1	3.4e-04	40.24	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..59
None	No IPR available	PANTHER	PTHR34683	EXPRESSED PROTEIN-RELATED	coord: 1..78
None	No IPR available	PANTHER	PTHR34683:SF2	EXPRESSED PROTEIN	coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021541.1	Tan0021541.1	mRNA